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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0044800 |
| Transcript ID | LotjaGi6g1v0044800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G30505.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160; TrEMBL-Plants: tr|G7IV44|G7IV44_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi6g1v0044800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8414498..8417487) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTTGACTCTGTTTATCCGCCAACCTTGATTTACCATATATAGATTTGAGCATTTGTGGTGGCAAAACCTTTGCAGC CTATGGGAAAACAAAAGCCAACACACAACATTACCTATCTTTCTTGGTTTCTGCTAAACTAACATTGGACGTAGGTGTGC TGTTCCTTAGAGGGCGGTCAAAGGTTGGGAAATGGAGGAGCAACAGACCAAGCCAGCGCTGGTGAAGAATCCTTCCACAG GCTCCCGCAAGATGGGCCGGCGCGTGGCCTTCGAGGTCCCCTCCAGCCGCATCATGCAAAGCCGCTCCTCTGACATCAGC GATATTCATTCCTCTATAGACCACCTTGAAAAGGGACGACACCATCCATGTTGCTTTGCATGCTGTGCATGGGGATGCAT CTTGGTCTTCATCTTCATCATCGTTCTTCTCTTTGCCGGGATCTCCTACTTGGGATTCCTCAAAGCAGGGATGCCAAAGG TTAATGTCAGGTCAATCAACATAACCAGGTTGCAGGTAGGGACGGACCTTGGTGTACTAAAAATTGGGTGGTAGCTCCCC CAAGAATTTTATTTGTATTGGCCTTCTTCAAAATTTTATACTGTCTTTTCCAATTAGTCATTCTTGATTTATTTTAGCGT GTTAAATTTCTTCCCTCTTACTCATTGCAGGTTGATAGCTCACAGAAGATGGATGCAGATATAAGTTTAGGATTGAGGAT CTCAAACAAGAATGAGAAGCTGAAGCTTTTGTATGGTCCTCTTTCTGTTGATGTCACAAGTGAAGATGTGCCATTGGGGA TGGCTAAACTTAAGGGCTTCTCTCAGATGCCAAAGAATGACACAGATTTGGATATGACAATGGCACTGCATAATGCTGAT GTTGATAAGTATGCTGCTGATGATTTGAAATCAGACATCAATGCAAATGAGATGGTGTTTGATGTGTATGTCAGTGGACA TATTGGTTTGAAGGTTGGGAGTTTGCAGATGACAGATATCCCCTTTCTAGCATCTTGTCATCAAATCAAACAGATGGATG TAGATTTTGGAAGAAGACCTGAATGTGATGTCAAGATGTTTGCTTTCAGGTAAAAAAAGTGTGTATGTTTTTTATACCAT GCCATTTGCATGCACAAATTTTTGTCATTAATTAACATGCTCTAAAAATTGGTGTATCAAGATCTTCTGTTTGCAATGGT GTCTTAATTTCCTGTCTCGCCAATGAATCTTTCCATGTCAATTGGAAAAAACACGAACATGTCTGTTACAAACTAATATC GTGGCTTTTAGTTGATATGGAAAAATGTAATTGGTAAGGCAGAAAATTGAGACACTATGGGATGAAAGAGTACTCCAGAA AGATGATTAAGGTTGATGAGAACTCTATATGCAATATTTATTGGAAAATGTCTTGAACAATATGTATGTTGTTGGGTATG TTTGTAGGTAATGTGCATTATGTTTGAGAAAAGTATATAGAGTTCAGATTTGGATATTTTTCTGTTTTTGAATAATAAGA CTTGGTTAAGCTAGATATAATTTTGACTGATGACTAGTTGAGGTTTACTGATTATATTAGAAAAGCTATATCTTTATCTC TTTGATAGGACCACATCCTTTTATTTGAAAAACAAAGGGGATAATCATCCTTCAGAGATCTGGTTTATATTTTGTTTCCA AATCAAGAGGAAAAGGGGGCACAATGGCCATGAATATTTTTATGTAGGAGTTTTGTCTGCAATAAAATCTTCTACCCTAT TTGATGTCCTCTTATGTGTCATACTAATTAAATTATGTCTTGTTATTTGAAAACAACATATGTAAGGTTATAACTGTCAT TTCCATGCCCACGTAACACAATTTCATTAATGAGACATGAAATCAGATACCAAATGGAGAAAGATGATCGTCATCCTTGC CCATAGCTAAATGAATAAGTTCCCCTTTCTTTTAGAAACCATGCATATGCTTTTTTATTTTTTAAATCCAAAACCATGCA TATGCTTGCCATGCCTAAATAGATGACTTTAATTTGAGGAATCAACCCTGTTTTGATGTTTTGTATAACATGAAAATTGT TATAAGTCTCACGTTGGCTAGACATAGAGCATAGATAACTTTTATAAGGGTAGTGCAAACCTTAACTCTTAAGCTAACTT TTGTGGTTGAGTATAGACCTTCAATTTTTAATATGGTATCAGAGCCTATTCTAGATCCATTTGTTGTGGAGATATCCCAT ATTTGGGTCCCACATTGGCTAGAAATAGAATATAGATAGCTTTTATAAGGATAGTGAAAACCTTAACTCTGAGCTAACTT TTGTGGTTGAGTATAGGTCTCCCAATTTTTAATAAACACATACGTTTATGTAGGCATGTATTATCTTTCACATTGATTTT GGAGACTTCTTTCTAAAAATTAATACCAAACGATGATGTTCCAACAGATATACTAATGGCTTTCCTCAATTTGCTGCAGG CCTTCATCTAATTGATTAAATCAATTACAAGCAAGTTTTGCCAGAGCAGCATTTCTTCGCATCCTTCATCACATGACAAG TTTTTTATTCGTAGCCATGCATTCAAAAGCCATTAGAGACATTATTTACATTTTTGAAGTTTTTCAATGTAGATAAACTT CTGTTTTCTTCAGTGTGGACATGTATTAGTATATATGGCGTAATTTCAAAAAAATCTGGTTATCAGTACTGCAGCTACAT AGTTCAAGAATATACAGAATTTAAAAAAAGAAAAGAAAGGGAGATTAGGGAATAACTATTTTTTAACCTAGGACCTCCAA GAAACTGTTTTCTTCTTCTTCTTCTTCTCAACTATACCGGTGTGCATTTTGAAACTAGATGGTGGTGTAAATTTTGTCTT GTGCGTGTTCTAAATTTAATCGTATATTCAAGGACGAAAATATGAAGAGATGTTCTTTTTTGTTTTTTGTTTTTTCCTTT TTGTTCACGTTGAGTGAAACAGTGACGGAG
CDS sequence (LotjaGi6g1v0044800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGCAACAGACCAAGCCAGCGCTGGTGAAGAATCCTTCCACAGGCTCCCGCAAGATGGGCCGGCGCGTGGCCTT CGAGGTCCCCTCCAGCCGCATCATGCAAAGCCGCTCCTCTGACATCAGCGATATTCATTCCTCTATAGACCACCTTGAAA AGGGACGACACCATCCATGTTGCTTTGCATGCTGTGCATGGGGATGCATCTTGGTCTTCATCTTCATCATCGTTCTTCTC TTTGCCGGGATCTCCTACTTGGGATTCCTCAAAGCAGGGATGCCAAAGGTTAATGTCAGGTCAATCAACATAACCAGGTT GCAGGTTGATAGCTCACAGAAGATGGATGCAGATATAAGTTTAGGATTGAGGATCTCAAACAAGAATGAGAAGCTGAAGC TTTTGTATGGTCCTCTTTCTGTTGATGTCACAAGTGAAGATGTGCCATTGGGGATGGCTAAACTTAAGGGCTTCTCTCAG ATGCCAAAGAATGACACAGATTTGGATATGACAATGGCACTGCATAATGCTGATGTTGATAAGTATGCTGCTGATGATTT GAAATCAGACATCAATGCAAATGAGATGGTGTTTGATGTGTATGTCAGTGGACATATTGGTTTGAAGGTTGGGAGTTTGC AGATGACAGATATCCCCTTTCTAGCATCTTGTCATCAAATCAAACAGATGGATGTAGATTTTGGAAGAAGACCTGAATGT GATGTCAAGATGTTTGCTTTCAGGCCTTCATCTAATTGA
Protein sequence (LotjaGi6g1v0044800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEQQTKPALVKNPSTGSRKMGRRVAFEVPSSRIMQSRSSDISDIHSSIDHLEKGRHHPCCFACCAWGCILVFIFIIVLL FAGISYLGFLKAGMPKVNVRSINITRLQVDSSQKMDADISLGLRISNKNEKLKLLYGPLSVDVTSEDVPLGMAKLKGFSQ MPKNDTDLDMTMALHNADVDKYAADDLKSDINANEMVFDVYVSGHIGLKVGSLQMTDIPFLASCHQIKQMDVDFGRRPEC DVKMFAFRPSSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 245 | 245 | 9.3E-88 | – | |
| PANTHER | 1 | 245 | 245 | 9.3E-88 | – | |
| Phobius | 1 | 69 | 69 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 70 | 90 | 21 | - | – | |
| SUPERFAMILY | 74 | 178 | 105 | 5.23E-5 | – | |
| Phobius | 91 | 252 | 162 | - | – | |
| Pfam | 123 | 219 | 97 | 1.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0044800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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