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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0045200 |
| Transcript ID | LotjaGi6g1v0045200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT2G30520.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q682S0|RPT2_ARATH Root phototropism protein 2; TrEMBL-Plants: tr|I1MZN6|I1MZN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8453465..8457782) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAGAGAAACCGCAGACGGAACCTGAGAAGAGGATGTGGAAGTCATGATGGTGGCCGGCGAACTGGAAGATGATGATG ATGCAATGATGAAGATGGTGAAAGCTCGCGCAAACCGAAATGGTTCCGGTAGAGCTTTGGAATATCAAGGAGTTGCAAGG TTTTGGAAATGGGTTTTTCTTTTTCAGAGAGAAAAGCTAGAGGTTGAAGATGAAGTAGAAGTGGGAAGGTTTTTCCACCT ATTTATAAGACTTAAGTCTGGGTAAGATGAGCGGTTGAGATTAGACCGGATGCCAAAACTTTGTTCAATGAAATTTAGTT CAATCCGTTTGAATTCTGAGTGGGGTATGGCAGTTTCTACCTTTTGGTTTCTCTTGAAGGACGTGTCTGACATGATTAGA CATTTATGATAGTGGAGTGTGGAAGTTGCTAAAGGTTAAAAGAGACTTTTGTTTTGTCAGGAATGGAAAAGGAAAAAACT GACATTTAGTGTTGGGTCGAAATCATGTGAGACGAAAATATCATTTTTTCTGATCGAATAAATGATATTTTGGGGGGCAT CTGTTGACTACACAATTTTATATAATTTCGACCTATGTTGCATAATTTCGACCTATGAAGTCGAAAGTAAGGAGACTCAA GAAAATTTACCAAGTGCTAAGTGACTTCGGCTGGAAAGTATTTTTTCGAGATGTGAAGAATCCATTACGGGAGGCCGGTT GTTTTGAAGACAGTTCGCGAAAGACACGTAAGGAGCAAAAAAGGACACGTGTAGGACGAAGACATATTCAGAAGACACTT GTAATGGTTTTATCAATTGACCGTTAGAAGTCAGTTACATTTTTAAGTCTATAAATAGCAGGGTTGTAGAAAGAATAGGG GTACACAATCTTTACTCGAAAATTCTCAAGTGCTTACAATCAATCACAATGATTACAAGCCAAGTTAGAGTGAAAAAGTA GGGATTCGTGTAACACTGCATCTTATAGTTCATTATTATCATTCAGATTTAGAAAATTCATTTATTGCTTTTATCATTTA AACCGAATGTATTCGTTTTGTTTCTAATTTGTTATTAAATCTCTTTAGTTTTGAGTGACTAAATTTAATTTATTTTCACC AAAGAACCCAAGAGGACTCGAATCCAGTCCCAGATTGATCCTTGGATTCTCTATTTGTTTTACCAAAATTTGGTGTAAAC ACATGGCCAGTAGCCACATCATTGTGCTGGCTGGGTGAAATTGAAATCTAGCGGAGCCAATGGGAACTTCTTGTCTGCAC TATTACAAGCAGGTTAAAATGGACAGGACCAAGGGATGAAAATGACTTACTAGGATTTACCTTAAAAAGGGCCCCATATA CAGAAAAGATAACAAATATAACACTCCAATTAAAGTCATAAACTGGGACCACAATCACAAAGTTCAATCCATGCAGATTA ATGATTAATCACAATAACAAAGGTGAAGAAGCTACACCACTCAAAATGTCCTTATAATAGCCCTCATGGCATTACCCAAT ATTGTTCATCTCAATTCTCAAGTTCTCAACCACATCTATTTCATTCTCTTTGACTATAGTTTCTATCCAGCTCCCTCAAC AAAAACCACAAGCTATTCATGGCGGCTCCCAATAGACTCTCTCTTGCCATGGAGAGAACTGGACAATGGTACACACGGCC ACACTCAACTCCACTATCCTCTATTTTCAAAACCATACACCATGCATGCACATAATTAATTGTACTCTCTAATATCTATT AAGTGAACTAATTTCTGTACTGTACTGTGATTATTGCAGGATTTTCTCCCAAGAAATACCGACTGATGTTATAGTTCAAG TTGGAGAAGCAAGTTTCTGTCTCCACAAGGTACCCAAAACATTAACAATGATATAACTTCATCCATTAATATCTGAGTTT AATTGCTTACTAAATATTTTGAATTCTGTTGTTACAGTTCATGCTAGTGAAAAAAAGCAACTACATCAGAAAATTGATAT GGGAAGCAGAGGAGAGTGAACTCACCACAATCAACCTCTCTGATATACCAGGAGGTGCTGGAACCTTCGAGAAAGCAGCC AAGTTCTGCTATGGTGTCAACTTCGAGATCACAGTCCACAACGTCGCCGTTTTGCGCTGCGCCGCCGAGTTCCTAGAGAT GACCGATGAGTATTGCGACAACAGCCTCGCCGGCCGGACGGAGGATTTTCTATCTCAGGTTGCCTTCTTCACACTCACCG GCGCCGTCACCGTCCTCAAATCCTGCCGCCACCTTCTCCCCATCGCCGACGACCTCAGCATCGTCGAACGCTGCGTGGAA GCCGTCAGTGCTAAGGCTTGCAGCGAGGCCAATTTCCCCAGCCGCTCGCCGCCGAATTGGTGGACGGAGGAGCTCGCCGT TCTCGATGTTGATTTCTTCGGCAGAGTCATCGCCGGCATGAAGCAGCGTGGCGCCAAATCCATGACGCTATCCACCGCGC TGATCACCTACGCAGAGCGAGCAATCCGGGACCTTACCGGTAAAGGAATCAGGTCATCAGATTCCAGCGAAACCGACTCC AGAGTGAACCAACGGAAGCTCCTGGAGTCGATCGTGGAACTCTTCCCCTCGGAGAAAACCGTTTTCCCGATCCACTTCCT CTGCTGCCTCCTCCGCTGCGCGATCCAACTCCGCGCCTCCGCCACCTGCAAAAGCGACCTCGAGAAGCGGATCTCGTTGA TCCTGGAGCACGTGACAGTGGACGACCTCCTCGTGCTGTCGTTCTCCTACGACGGCGATAAACTGTTCGATCTCGAAAGC GTGCGAAAGATCGTATCAGGATTCGTTGAGAAGGAGAAGAGCGGCGCGGTTTTCACCCCCGGCGAGTCCAGAGAATCTTG CTCCGCCGCGACGCAGCGCGTGGCCAAAACCGTCGACGCGTACCTCGCCGAAATCGCTACCTACACCGAACTCAGCATCT CGAAGTTCAACGGCATCGCCATCCTCATCCCCAAACACGCGCGTAAGATCGACGACGATCTGTACCGCGCCGTTGATATC TATCTCAAGGTAAGAAACTAAGATCTTAGATCTAACAACACGCGCCGTATACTCTGGTGAATCGAAACGACTTTGCTTAA CGCGATTTTGTTGATTTTTTCAGGCGCATCCGAATCTGGATGAGATAGAGAGGGAGAAAGTGTGCAGCGTGATGGATCCA CTGAAGCTATCGTACGAGGCGCGTGTGCACGCGTCGCAGAACAAGAGGCTACCAGTGCAGATTGTGCTACACGCGCTGTA CTACGACCAGTTGCGGCTGAGGAGTGGGGCGGATGACGGCGGCGAAGCCGTGGCGGAGAGGGAGCAGCTTCAGACGGATG TGACGTTGGTGAGGGAGAACGAGGAGCTGCGATTGGAGCTGATGAGGATGAAGACGGTGGTTTCGGATTTGCAGAAGGGC GTTGCTCCGTCGTCGAGTAAGAAGATTAAGTTCTTTTCCTCTGTGTCGAAGAAGCTTGGGAACTTGAACCCGTTTAGAAA CGGGTCGAAGGATACGACCCATTTAGAAGATGGGCCTGTGGATTTGACTAAGCCCAGAAGAAGAAGGTTCTCCATCTCGT AGTTTATATTTAGGTTTAGTTGGGTTTTCTTCAAGAGCTTTCTGATTGATTGATGCTGTTTGATTTTATTTTTTTATTTT TTTGAGATTTTTTTTCGTAATTATGTTGTGTATTTTGTAGAATTTGTGCAGTTTGAGTATACATTTTGTAAGGAATCATA TGCATTACTACAATGTTCTAATGGACGAAATGTTACAATGTTTGTTCTTATAATTGCAAACCTCTCATCTGATTGTATAA TTTCACAGCGGTTGCAGCTCCTTTTTTTTTTAATGTTAAGACTATATTTGTTTTGAAAGAATTAAAGAAATAAAATCATT TGTGAACTTAGAACGTGTTTGTGCTGTTAACTTCTTTTGCTATAGGCAGGAAGAAAACCATGTTTGGGAAAGAGTTATGC TTGGTGTGAAATGTCAAATGGAATATGAGAGATGGTACATTGATTAGGTTCTTGGGGGACACTTGGCTTGCTTCTGGTAC AATCTTGAGACAGTATATGACCATGAGATTCCGCAGCAAAACCTTGGATATAGTCATATAGTGGCATAAATCCTTAGCTG TATGCCTCGTAAGTCCTAACTAGTTGTTAAGGAACATAGTATGTTGTATCTTTGGGTCGCTAATTCGAATGGATGTTGTA GACTTCTTCTCCATAGTGTATAAGTGTGTGTTTGGATTAGCGTTAGTAGAATTGGATCTGACCAGAATTGGATCTGGA
CDS sequence (LotjaGi6g1v0045200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCCCAATAGACTCTCTCTTGCCATGGAGAGAACTGGACAATGGATTTTCTCCCAAGAAATACCGACTGATGT TATAGTTCAAGTTGGAGAAGCAAGTTTCTGTCTCCACAAGTTCATGCTAGTGAAAAAAAGCAACTACATCAGAAAATTGA TATGGGAAGCAGAGGAGAGTGAACTCACCACAATCAACCTCTCTGATATACCAGGAGGTGCTGGAACCTTCGAGAAAGCA GCCAAGTTCTGCTATGGTGTCAACTTCGAGATCACAGTCCACAACGTCGCCGTTTTGCGCTGCGCCGCCGAGTTCCTAGA GATGACCGATGAGTATTGCGACAACAGCCTCGCCGGCCGGACGGAGGATTTTCTATCTCAGGTTGCCTTCTTCACACTCA CCGGCGCCGTCACCGTCCTCAAATCCTGCCGCCACCTTCTCCCCATCGCCGACGACCTCAGCATCGTCGAACGCTGCGTG GAAGCCGTCAGTGCTAAGGCTTGCAGCGAGGCCAATTTCCCCAGCCGCTCGCCGCCGAATTGGTGGACGGAGGAGCTCGC CGTTCTCGATGTTGATTTCTTCGGCAGAGTCATCGCCGGCATGAAGCAGCGTGGCGCCAAATCCATGACGCTATCCACCG CGCTGATCACCTACGCAGAGCGAGCAATCCGGGACCTTACCGGTAAAGGAATCAGGTCATCAGATTCCAGCGAAACCGAC TCCAGAGTGAACCAACGGAAGCTCCTGGAGTCGATCGTGGAACTCTTCCCCTCGGAGAAAACCGTTTTCCCGATCCACTT CCTCTGCTGCCTCCTCCGCTGCGCGATCCAACTCCGCGCCTCCGCCACCTGCAAAAGCGACCTCGAGAAGCGGATCTCGT TGATCCTGGAGCACGTGACAGTGGACGACCTCCTCGTGCTGTCGTTCTCCTACGACGGCGATAAACTGTTCGATCTCGAA AGCGTGCGAAAGATCGTATCAGGATTCGTTGAGAAGGAGAAGAGCGGCGCGGTTTTCACCCCCGGCGAGTCCAGAGAATC TTGCTCCGCCGCGACGCAGCGCGTGGCCAAAACCGTCGACGCGTACCTCGCCGAAATCGCTACCTACACCGAACTCAGCA TCTCGAAGTTCAACGGCATCGCCATCCTCATCCCCAAACACGCGCGTAAGATCGACGACGATCTGTACCGCGCCGTTGAT ATCTATCTCAAGGCGCATCCGAATCTGGATGAGATAGAGAGGGAGAAAGTGTGCAGCGTGATGGATCCACTGAAGCTATC GTACGAGGCGCGTGTGCACGCGTCGCAGAACAAGAGGCTACCAGTGCAGATTGTGCTACACGCGCTGTACTACGACCAGT TGCGGCTGAGGAGTGGGGCGGATGACGGCGGCGAAGCCGTGGCGGAGAGGGAGCAGCTTCAGACGGATGTGACGTTGGTG AGGGAGAACGAGGAGCTGCGATTGGAGCTGATGAGGATGAAGACGGTGGTTTCGGATTTGCAGAAGGGCGTTGCTCCGTC GTCGAGTAAGAAGATTAAGTTCTTTTCCTCTGTGTCGAAGAAGCTTGGGAACTTGAACCCGTTTAGAAACGGGTCGAAGG ATACGACCCATTTAGAAGATGGGCCTGTGGATTTGACTAAGCCCAGAAGAAGAAGGTTCTCCATCTCGTAG
Protein sequence (LotjaGi6g1v0045200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPNRLSLAMERTGQWIFSQEIPTDVIVQVGEASFCLHKFMLVKKSNYIRKLIWEAEESELTTINLSDIPGGAGTFEKA AKFCYGVNFEITVHNVAVLRCAAEFLEMTDEYCDNSLAGRTEDFLSQVAFFTLTGAVTVLKSCRHLLPIADDLSIVERCV EAVSAKACSEANFPSRSPPNWWTEELAVLDVDFFGRVIAGMKQRGAKSMTLSTALITYAERAIRDLTGKGIRSSDSSETD SRVNQRKLLESIVELFPSEKTVFPIHFLCCLLRCAIQLRASATCKSDLEKRISLILEHVTVDDLLVLSFSYDGDKLFDLE SVRKIVSGFVEKEKSGAVFTPGESRESCSAATQRVAKTVDAYLAEIATYTELSISKFNGIAILIPKHARKIDDDLYRAVD IYLKAHPNLDEIEREKVCSVMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLRLRSGADDGGEAVAEREQLQTDVTLV RENEELRLELMRMKTVVSDLQKGVAPSSSKKIKFFSSVSKKLGNLNPFRNGSKDTTHLEDGPVDLTKPRRRRFSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 556 | 554 | 5.1E-302 | ||
| PANTHER | 3 | 556 | 554 | 5.1E-302 | ||
| Gene3D | 8 | 114 | 107 | 1.8E-11 | – | |
| SUPERFAMILY | 12 | 110 | 99 | 1.02E-16 | ||
| CDD | 17 | 111 | 95 | 1.29673E-34 | – | |
| Pfam | 20 | 110 | 91 | 1.9E-7 | ||
| ProSiteProfiles | 25 | 93 | 69 | 10.82 | ||
| SMART | 25 | 121 | 97 | 2.5E-4 | ||
| ProSiteProfiles | 180 | 455 | 276 | 77.429 | ||
| Pfam | 180 | 430 | 251 | 3.7E-82 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Phototropism | The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. |
Expression pattern of LotjaGi6g1v0045200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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