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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0046200 |
| Transcript ID | LotjaGi6g1v0046200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|A0A1J7HMP0|A0A1J7HMP0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0046200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8600568..8603907) extracted from Lotus japonicus Gifu genome v1.2.
CGTGATTTGGAGGGGTCGGTTTCATTGTACAGGCCCCCATAGATTTGTACGCAGAAAGCAGATACATATACCCCAAAACA AATCCATGGAATCCTGAAAAGAAGAAATCTCTCAAAGGATGGACTATGCACTAATTGATCCATAATAGTGCAAAACTCTA CGTTTCATCTTTTAAAGGTATCGTGCGATTGTATTCATGTTAACAAATTTATTGATGCATGTCACATTCTTAGGCTTGTT TCTTCAAATGTATATACTCATAATAACATTGTTCTTGTTAATGCATGCCATTGTTTTTCATTGGAAATGTTGTTGTTTAC AGGTTTTACTATATATATATGCATGACATTAGGGAAATATCTATCAGATATAGAAGAGAAGGGAGGATAAATTAATAATG CCCCAATCAACAGGATTCATGGATGTTGCAGACTCAGATTTCCTCAGTAACAAAGAACCTTATGATGATGAATCAGAATT TGACTCTGAGTTTGAGAAATACTTTGTGTTCTCCTCTGCCAAGAACCGCTTTTTTGGCAGGACAAGGTCTCTTCATATTG TCCTAGGTTCTGGAAAAAGTATGCTTCTCCGCTTCTTTTTACATTTCCATTTTCAATCCTTCAAACAAGGCATGCTTTGC ACGTTTCATTCATTTAGCAAATTACAGTGAATCTATTAACCAAGTTAGTATCACTATTTTACATGGTTTTTCTGTGCTTA GTTGCTGATATCATACTCTGGAGAGATAAGAGGAACTCAACAAGCGTTCTCACTGGTGTAACTTTGTTATGGATTCTTTT TAAGAGCATGGATTACACCCTGCTTAGTTTCATTTGTGACTCTCTCATACTTCTATTGGCAATGCTGTTCCTCTGGACTC ATTTAACCACCTTCATAGACATGTGAGTTTAATTCACTCTATCAATAATTTTAAAGCATTTTTACCCTATATTAGGGCAA TTAAATTCCCAATCCATCTGATTTGGGTAAACAGCTTAATTAAGAGCTCATAGCAATAAGCACTTATACGATAAGCGTTT ATTCATAAGCTTATTTGAGAAGCTTATTAGATAAGCTCAAAATAGGTTATAGGAAAACATAAGTGTTTATTCACAAGTTA ATCTGAACAAGTGATGAAAAAAAGCTCAAAATAGGTTAGAACTTAGAAGTAGGAATAAACGCTCATTCGTAAGCTAATAT GAGCAGCTTATTAAAATAAGCTCAAAACAGCTTATACATAGATCTTGAGCTACTAACATCAGCTCCTCAAACATTTGCAT AAATGGTTATATTATAAGATAAGATCAAATAAAGTATTCCAAACAAGTCCTAACTAGCTTGCTTGTAAATGAATGTTCAA TTTCAAGATGGTAGCCTTTGCCAGACATGTTAGAATATGACTAAACAGGACATATATGTTTGATGTATATTAGAAGTGGA ACAAATTGGTCCATTTTGGTTCTCTCTAAATGTGTGGAACCAAGGAGAATAAATAGGTCAAAGGAATAGGACAGATTGTC TTCCATTTATCCACATTCCAAACACTACCTTAGTATAAGTGCTATAATCACAAAGTCTACTTGTTTTGTGTAAAGAGCTA TATAATCATCTGCAAACAATCTATTTTGAATCAACACTACCTATTTCATCTGTAACTGAAAGTTCTGTGTCAATTCTAGA CCTATAGCTATATCCAGTGTGGTGTTTATTATCATCGGTAGATATGGCAATTGAAGAATTGGTTGAAAATAATATTTGTC ATGTTTCATTGTCTGGCTCCTGATTAACTGAATGAGTTTATCTACATGCTTTGTTGGGTTATTATTTTACACCAAGGGAT GATGCTATTTTCTGTTTAAAACAGACCTCCACCTAAATTATCAGCATTCATCTTACCCCATGGGTTGCTTGTTGACATTG CTCATTCAATGACTAGTGGGCTTAACAAACTACTCATAATATTTGGAGTCCTAGCTTCCGGAAGAGACTTTAAGAAGTTC CTCTTGGTGCCTTTCAGCATCCTTTTTAACCTTCCTTTTGTCATTTTGTTCGTGGCATTTGGTTTTCTCTGACAACAAAA TAATCTGCAGGTTACATTGACATTGGGAGCTGTCTCAGTTTTTGGCAGATGGTTCACAGCTGCAACTATCATCTACATAG GTCAGCTAGCTAATCTCAAATCACCAAACCCTAGAATTGTTAAGTTATCTACCATGGCAGTAACTATTCCACACATGTAA AATGTTAAGGTCTCACGTTGACTAGAGATATTGTCAAATAAGTCCATATAATATAAGGTAATCCTTACCCATGAGCTAAT TTTTAAGTTAAAGTTAAGCCTAGATCAAATTTTAAGATGATATCAGAATCTATTATAGATCTGTCTATTAAAAATTGCTC ATATATGAGTCACCTGCAAATGTTCATTCCTGATATGGCCAAAGAATATATAAGGTGGAGCAATCATCACGAGTAATGAT TCATCACACTCTACTTTCTCTTCCATCTCATTTTCACCTAATTTTCTTTCTATCTTTCTCTGCATTTCCTATTACATCAT TTATCATATCGCTCATTTGAGTCATTTCTCTTTTTTTCTTCACATCTCACCCAAGTGGAGGTGGAAATGGTATGTGAACC AAATATTATTGAATCATCACCCTGATCTAGTTTTGGGGTAGAGTTAGTCGTAACTTGAATTCTAAGATAAAAAAATGTGT ATATTAAACTAAAAGGTAACACTAGTTCAAGTTAGTTCTAATCTGTTTTTATCTTGCTCTGTTGGTGCAGGGTCTGTGAT ATTGTTTATAGTGCCAGCAGTATACGAAAGGCATGGGGCTTTCTTTGATATCATTGCTGAGAAGGCAATGATTGAATTAA GTAATCGATATGCAGAGTTGATGAATAAGTTTTCGGGGAACTCTCATTCCCAAAACTTGCAGGACAGCATTCTAGACTAG AGGTATTGCAAATCAATTTGCATGTTATGGTTTTTGTTCCGGATTAACACTTCATGGTGGTTTAACTTTGGCTGGAAACA AGACGTGCGCAAAACAATGTTGTTACATAATTGTATTTAGAAGTTGCAGCTAGTGTTCTTATAAATATAGTTCAAGAGTT AGCCACCAGGTTCAGTAATTTTGAACTAGCCTATGCATATATGATGTATTGATGGAGTGTATATTTAATCCTCACTGATA TATGGATCTGAAATTTTGTACACCAGTTAACAATGTACAATTTTTTGTTAACAGCATGTGGTTGAATATTTTGATTAATT ACTACATGATACACCAAAGTTTCATATTTGATTGACACTGATCGTTGATGTTACACCCAG
CDS sequence (LotjaGi6g1v0046200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCCAATCAACAGGATTCATGGATGTTGCAGACTCAGATTTCCTCAGTAACAAAGAACCTTATGATGATGAATCAGA ATTTGACTCTGAGTTTGAGAAATACTTTGTGTTCTCCTCTGCCAAGAACCGCTTTTTTGGCAGGACAAGGTCTCTTCATA TTGTCCTAGGTTCTGGAAAAATTGCTGATATCATACTCTGGAGAGATAAGAGGAACTCAACAAGCGTTCTCACTGGTGTA ACTTTGTTATGGATTCTTTTTAAGAGCATGGATTACACCCTGCTTAGTTTCATTTGTGACTCTCTCATACTTCTATTGGC AATGCTGTTCCTCTGGACTCATTTAACCACCTTCATAGACATACCTCCACCTAAATTATCAGCATTCATCTTACCCCATG GGTTGCTTGTTGACATTGCTCATTCAATGACTAGTGGGCTTAACAAACTACTCATAATATTTGGAGTCCTAGCTTCCGGA AGAGACTTTAAGAAGTTCCTCTTGGTTACATTGACATTGGGAGCTGTCTCAGTTTTTGGCAGATGGTTCACAGCTGCAAC TATCATCTACATAGGGTCTGTGATATTGTTTATAGTGCCAGCAGTATACGAAAGGCATGGGGCTTTCTTTGATATCATTG CTGAGAAGGCAATGATTGAATTAAGTAATCGATATGCAGAGTTGATGAATAAGTTTTCGGGGAACTCTCATTCCCAAAAC TTGCAGGACAGCATTCTAGACTAG
Protein sequence (LotjaGi6g1v0046200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQSTGFMDVADSDFLSNKEPYDDESEFDSEFEKYFVFSSAKNRFFGRTRSLHIVLGSGKIADIILWRDKRNSTSVLTGV TLLWILFKSMDYTLLSFICDSLILLLAMLFLWTHLTTFIDIPPPKLSAFILPHGLLVDIAHSMTSGLNKLLIIFGVLASG RDFKKFLLVTLTLGAVSVFGRWFTAATIIYIGSVILFIVPAVYERHGAFFDIIAEKAMIELSNRYAELMNKFSGNSHSQN LQDSILD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 91 | 91 | - | – | |
| PANTHER | 8 | 238 | 231 | 1.5E-77 | – | |
| PANTHER | 8 | 238 | 231 | 1.5E-77 | – | |
| ProSiteProfiles | 61 | 247 | 187 | 29.245 | ||
| Pfam | 62 | 211 | 150 | 6.7E-36 | ||
| Phobius | 92 | 115 | 24 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 116 | 134 | 19 | - | – | |
| Phobius | 135 | 159 | 25 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 160 | 165 | 6 | - | – | |
| Phobius | 166 | 199 | 34 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 200 | 247 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0046200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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