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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0047100 |
| Transcript ID | LotjaGi6g1v0047100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 56; TAIR: AT4G10360.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56; TrEMBL-Plants: tr|I1LM10|I1LM10_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0047100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8661809..8667458) extracted from Lotus japonicus Gifu genome v1.2.
CACACGCTCCCATTCTTCATTGTCTCTTTGGCCTCTCTCTCATTTTCTTTCACTTCAGGTCAGCTTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCACTCTGATTTTTCTACTGAAAATAATAGCTTCAATTCAATTATTATGGGTCACCCCAGCTACCTG ATTTTTTCCTTCTTCTTCTTGTTCAGCAGCTCTTACTTCTTCCCTTCTTTTCTTCTTGGTATGTATGTATGCTTGTGCAA CTTTCAACTTATTATTATTGTTTGTTCATGTCGACATGTCCTTTTGTCCTATTAATTTACCTTTTTCTGCTCATGGGGTG TCTTTGTTTTCCAATATTTTTGCTCATCTGGGTCTTTCTAGTCTTCACGTGTATGCTAATGTATGGTTGGCCTATGTCAT CTTGTGCTGACTCAAACTGAAACGGCCCAAATAAATAAATGCTATTTTTTCCAGACACGTTTCACATCCATGGAAGTTTT TTTTTCCCTATTAAATAAAAAGTCTCTATCCCAGTTCTTTGTTTATGTGGGTTTCCACTTTCCACCACTTTCCTTTACTG TATGCTTCAAATTCAAAATACTGTGTCTTTATGCCTTGGCTCTAATGCTTTTTTTTTTTTTGGTGTATTTGATGCAGTTT GGTTTGACTTTGTGATTTTTCAACTGGGAGAGTGAATGGGAATTACTCTTCCTTTTGGTGTCTTGGCTGGTTTGCTTTCC TCTGATGGCTTTGTTTCTCCAAGCAAAGAAATTCAATGGCTGGTGTCTGTATTCACCGGTATCGTCTTCTGCGTTATTGT AAGTGAAATGAGCTTTCATCTGTTTATCAGTGACTTCTTTGTTGCTAATCGTTCTTAAGGATCGGGAAGCTATGTCTAAG TAAGCCAAATAAGTATTTATGGTTGCTGAAATGCAGAATATGATTCTATAAACATCACAAGGAATAGGAGAAATGGGGGG TAATCAGGGAGATATTTGATATGCCTTTCTATGAATTGAACTGAAAAGAGTGATAATCCAGATGAAGGATTGAGCATAAA ACATGTAACTATGTAAGGGAATTAGAATTTGTCAATCATGCATATAAGCGTGATCAGTTACGCAATGGGAAATTCATTCT GTAGGAATCATTATCTGTCTTTTGACATTAGTTGTTGTATTAGTTCAGTGCCTAATATAGATCCGTTATTGGACCACCAA CAAATGTTCAATCTTGCAAAGTCCACATTCCAAATGTTGCATGAGGAGGGTGTATTAAGGTCCTAGATTGACTAGAAGTT CAGTTGGAGACTCGGAGTAATCCTTATAAAGGGTAGGGTAATTCTCACTCCCTAAGCTAGTCTCTGAGGTAGAGTTAGGC TCAAGCCTGAGTTTTAAGAAGGTCTATTCAGGTTTGAATGAAACTTAGAGAGTAGGGATTCTTCATAATGACTTAAGAAT TTAGATAAGTATAACTTGGTTTCACGGGGTTTATGGTAAAAAAGAAAAGAAAAAATGCCATGGAGAAGAGCTTGTATTCC TGTGCATTATTATGATGAAATATTGGTGCAGACTTTTAAGGGGATGGATGTTTAAATGGGTTGTTTCACAGGATATCCTT GGACTTAAATTGCAATTGTGCTTACTTACGTCGAGGAAAGAAATATTTCTCTTTTAAGTTCTCTGCTGACCTCTTCAGTT AGAGAAACATGGTGGCTTATTATTTAGTTTATATTACTCACAGAATAGTTTTTCATGGATGATGACACCATCCTTTAACA ATAAGTCCAAAGAGAACTTGACTGCTTTACTTGTAGGCAAACGATCTTATCCATAAATATGTTGTCTTGTCAACCTAACA ATTAAAAGTGATATTTGGAATTAGTGTTTAATGCCTTCTACCGCCTCATGTAATTTTTTCTAAGCACTTCACATTTTGAA CTTCCTGATGAGTGAGTTTATATTCCTTTTGCTCTCTTATCCAATTGAATTGGAACTTAATAGCAGCCAGGAAAGTATAT CTGAAAGTAGTTCTTTACAAATATGTGGTCTAGGTAGAAATGAGCTCCTACCTTTGTTTTGTAGCTTCAAATCCCAAAAT CTTTACTCTTTTGTTTATTTGAGACAGTAAATTAGGAACAGAGTCTTAGTTTGAACTGTCAGGTTTAAATAGAGGCACAT AGTGTTCTTTCATTCCCTTTTCCCTTTTATTTGAATGGGGAAATGCTTAAAATTTAGTCTTATCAAGATTACTTTATTTA ATAATTTGAAAATTTGATCCTTTTTAATTTTTTTCTTGAAGGCTTACAGATTGACTGCTATCTTTAGTTCTCTATTGTTC ACGGGATACAGCAAATTGAACAGTGCACAGAAAATTGAATGGAATAACCGGTAAAATGTCTTCTTTGTATCACTACTTTT GTTTGTATTGATTTATCCAGAATTGACTTTTTTACATTGAATTTAATGGTTACAAATTTTGTAATGCAGGGGAATCTCAA CGTTTCATGCTCTTTTTGGAGCATTTATGTCATTTTACCTCTTGATGTTATCAGATTTCTTCAATGACGATTCACAAGAA ACATTGGTTGTTAGTAGATCATCTACTTTCTCAAATGCAGTATTGGGGGTATGTTATGAAGATATAAGCACAATTTGATT TGTTTGACTTGACAGGAGCTGATTTTATATTATTTACCAATTTAACTGGATTTACACAAAAATGATGCATGTGAGGGGAT TGATAAAACATGTAAACTTAAAAGGTGTTTGTATTTTACAATTGACATTGACATCATTTGCTATATCTTTTTCTCAGAAA TCAGAAAAGAAAGAGTTTGGGGTGAGAATTTTAAATCAGTCCTTGTGATATGTTTTCCATTAATGGAAGAAGAGATTTAC AACACCCTCTGACTTTAAAAATAAACATGGCACATTATTTGGAATGGAAATTCTTATGAGGCAGTTTGGAACTTGTACAA TCAGAAAGTTGGAAAGCTGAGTAGAATAGATGAAACCGACAGTAGAGATGGAATTAAGACTCGCTTTGCATGTGAGAATT TGAGGGGCAGTTCAAGTTGATAAAAGTTGGGGATACACAATGTTGAATACTGAAAAATTATTACAGTTCAGTGGAAGGTG AAATATGTTACTAGTACTACTGATTAGTTGTAGTATTAGGGATAAGTTTGTGGCTTAGCTGTTTATGATTCAATTTTTAC GGACTTTTATCTTAAGCTTCTTTAAGTACCCAGGACAGTTTAAATCTTGAAGAAGCGTGGATTTGTTTAGGCTGTACTTC TTTTTAAAATGAACCTTCCTCTATGGGGTCATCAATTTTTAGATCTGTATAGCTATTATGAAAAATGCAAGAGGCACAAT AGCAATAGCATCTTATGCTGTTGGACAGAGGAAAGATTCATGCATACTGATGATGTCCACAATGAGTGATAGGAAATAGG AGTTATTTTAACAAATATTGCATGTTGGGACCCAGGCTGAAAAATTTCAAGCCAACTGTTAGTTTCCCCATTGGTCCGAT CTGCATGCTGTGGAGGTGCATTCATGAAGTCATGTTTTACTTATATTCTTGTTTTTTTTAAATCTCTTATCTAATACCGT ATTAGATTTTGGGATAGGCCCAGGTCAATCCCAGAAGCTAGTCCAAACGGTCCCAAGCCTTATGAGAACTACTTTGGTCG CATCTCTAGTCGTTGTGTGATCTCAACCAGCATTATTAAAACAATGATTGTTCACTTGGCTTATTTGTTATTTTTTACTT ATCTTCCCCCTCCTCTTTATACAGATTTCTATAGGTTATTTTATAACAGATCTTGCGATGATTCTTTGGCGTTTTCCAGC TTTAGGGGGTTTGGAATATGTAAGTTGAAAAATACTTTTTTTTTTCAGTCTTGGCTGTTGCACATATCTTTACACTTTCA TGATGCGTTGAATTCAATATCCAAGTTATGTGATTCGGAAGTGGCAAACTAACTTGTTCATTTTCATTTAAGGTTCTACA CCATGGACTGTCCATGTTTGCAATGATCCAATCTTTGCTAAGTGGTCAAGCACAGATTTACATACTAATGGTCCTCTTCA CCGAGAGTACAACACCTTTTGTAAATCTAAGATGGTAATTCTGTTCATGCATCCATTTGCTTTCTTGTACTTTTGTCAAC ATTGACTGATTATTTTAATTACACATACAGGTACTTGGACGCTGCTGGTCTTAAGAACTCTAAACTATACATCTGGAATG GCGTTGCGTTGTTCTTCGGGTGGTTGGTAATGTTTAATATTCTCTTGGTCTCAATTCAAAATTCATTTTAGTACCTGAAG GAATTGACTATGGACGAGTATGGTTTTATTTTGGTGCCTTTCTCCTCATTTATGAGTTTTGGATGAAAGGATAATTAAAA TAAATTCTGACAAATTGAATACTGCATAGTGCATATTGAATGCTTGAATAGGAAGCATTATGTAGATATTTTTACTCTAT TCTTTTTTTTTTTTTTAAATTACATTCACAAATAATTTGGTTGGCTCACATGAGCTTTAGAAGAGGGGTTTGAAAGAACT AACTTCACTAAATTTGGTAGGTTCATTATGCTGTCTAAATATGAAAGCGTAAAATTGATGATGATCATGGTTGACATATG CTCCTATATCATCCACTAGTAAACATAGGGTTCATATAAAACCACTAAGATGCCTTCGCCTAATATCTTAAGCTTTTGGA TAGTTTATTCTCGAGTGGTATCAAAGTTTCGGTCAAATAATTTGGAGTTCTATCATTGCTGCCCTCTAACATGCTTTAAA TGCTAAATGTTAATGTTTCTAAATGACAAATAGAGAAATTTAGTCTGTTGATGTAAGATAGGACTTTAAAGTTTAAACTT TGTCATGAGTCATAACAATTGAATGTCTTGGTCCCAATGGTTGTAACCAAAGTATAGAGTGCTTGACCCTTTTATATTTT TTTGTGCTGCAGGTTGCAAGGATTTTCCTGTTCATTTTCTTTTTCATCCACATGTGGATCCATTTTGATGAGGTGAACCT TTTCACTGTGATTCCCCATCAAACATATCTTCACAGCTCCCCTTTCTTCATCATCTAACGAATATATCCACACTTTTTTC TCCCCCATTTCAGGTGGAAGAGATCTACCCATTGGGTTTCTACAGCGTTCTTATGGTACCTCCTGTGATAGCAATTATGA ATGTGTTATGGTTCTGGAAGATTGCCAAGGGTATGATTAAAACTCTTTCAAAAGCAAAACACAGCAAGTGAACCCATTAC ATTTCCTTCTGCTCCTCTTATGTGCGAGTCCATCTTTTTTTGGTGCACAAAATGGTCATTGAATTGATTTAGGGACAGTT GTAATCTACATCTTTTCATTCACTTACAACAATACTTGTAAGATTCGGTACAGACGTACAGTTGAATCTTGTACATTTGG TATTACCAAATCGAATATTTTTCTTTACAGTGACTAAGGCTGTGTTTGGAAGAGTGTATATTGCAAGTGTCTGGATAAGA TAGAAAATAGAAGTTGGATCCCACTTTCACATATTCTATTTATATCGAAGGTTCAATTTCCTCGTGCAAATAAGTAAATA AATAAGACAAGTATATCTTGGATAGCTTCAACCATCAATTTGGGATGTCT
CDS sequence (LotjaGi6g1v0047100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATTACTCTTCCTTTTGGTGTCTTGGCTGGTTTGCTTTCCTCTGATGGCTTTGTTTCTCCAAGCAAAGAAATTCA ATGGCTGGTGTCTGTATTCACCGGTATCGTCTTCTGCGTTATTGCTTACAGATTGACTGCTATCTTTAGTTCTCTATTGT TCACGGGATACAGCAAATTGAACAGTGCACAGAAAATTGAATGGAATAACCGGGGAATCTCAACGTTTCATGCTCTTTTT GGAGCATTTATGTCATTTTACCTCTTGATGTTATCAGATTTCTTCAATGACGATTCACAAGAAACATTGGTTGTTAGTAG ATCATCTACTTTCTCAAATGCAGTATTGGGGATTTCTATAGGTTATTTTATAACAGATCTTGCGATGATTCTTTGGCGTT TTCCAGCTTTAGGGGGTTTGGAATATGTTCTACACCATGGACTGTCCATGTTTGCAATGATCCAATCTTTGCTAAGTGGT CAAGCACAGATTTACATACTAATGGTCCTCTTCACCGAGAGTACAACACCTTTTGTAAATCTAAGATGGTACTTGGACGC TGCTGGTCTTAAGAACTCTAAACTATACATCTGGAATGGCGTTGCGTTGTTCTTCGGGTGGTTGGTTGCAAGGATTTTCC TGTTCATTTTCTTTTTCATCCACATGTGGATCCATTTTGATGAGGTGGAAGAGATCTACCCATTGGGTTTCTACAGCGTT CTTATGGTACCTCCTGTGATAGCAATTATGAATGTGTTATGGTTCTGGAAGATTGCCAAGGGTATGATTAAAACTCTTTC AAAAGCAAAACACAGCAAGTGA
Protein sequence (LotjaGi6g1v0047100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGITLPFGVLAGLLSSDGFVSPSKEIQWLVSVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGISTFHALF GAFMSFYLLMLSDFFNDDSQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRFPALGGLEYVLHHGLSMFAMIQSLLSG QAQIYILMVLFTESTTPFVNLRWYLDAAGLKNSKLYIWNGVALFFGWLVARIFLFIFFFIHMWIHFDEVEEIYPLGFYSV LMVPPVIAIMNVLWFWKIAKGMIKTLSKAKHSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 27 | 9 | - | – | |
| PANTHER | 21 | 272 | 252 | 1.1E-108 | – | |
| PANTHER | 21 | 272 | 252 | 1.1E-108 | – | |
| Phobius | 28 | 54 | 27 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 55 | 74 | 20 | - | – | |
| ProSiteProfiles | 63 | 267 | 205 | 36.85 | ||
| SMART | 63 | 267 | 205 | 5.1E-40 | ||
| Pfam | 67 | 260 | 194 | 3.3E-27 | ||
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 75 | 91 | 17 | - | – | |
| Phobius | 92 | 110 | 19 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 111 | 132 | 22 | - | – | |
| Phobius | 133 | 138 | 6 | - | – | |
| Phobius | 139 | 158 | 20 | - | – | |
| TMHMM | 139 | 158 | 20 | - | – | |
| Phobius | 159 | 163 | 5 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 164 | 185 | 22 | - | – | |
| Phobius | 186 | 196 | 11 | - | – | |
| Phobius | 197 | 224 | 28 | - | – | |
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 225 | 235 | 11 | - | – | |
| TMHMM | 234 | 256 | 23 | - | – | |
| Phobius | 236 | 256 | 21 | - | – | |
| Phobius | 257 | 273 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0047100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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