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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0047800 |
| Transcript ID | LotjaGi6g1v0047800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein; TAIR: AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|I3S471|I3S471_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0047800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8757553..8759546) extracted from Lotus japonicus Gifu genome v1.2.
AGAACATTCTATGTTGCACTATAGCATTACGCAACCTTGAATACTTGGCACATGCGATTGATGATAAGACAGTTTATCAA ACAAAATAAATTACATCCTGATGGTGACTCTTTCAAGTTTTAACCATTAAAGTCAAACATTGAAAACTTGATGCCATCTT ATATATTCCACATAACCTGCTCCAAGACTAGTTCATGTTCCCACCCACTTTCTTGCTATACATAGCAGAGAAACACACAA CAATAGAATTGAGGAATATCAATTAAGCATTTTGCAGTGATCACACATTCCACACATACTTTTTGTGCTTTTCTGATACC AAAAATGGCAGATCATCAGAGAATTCATCCAGCTCATGATGTGGAATCACCAAACACACCAACAGCTCCATTGGTGCCAG AAAATACTGCAAAATCTGATAGTGGTGATCCTACAACACCTCTTCCTCAACGCACTCATCCAGTGATGTATTCCAACCCA CCAAAGAAAAGAAGAAGCTGCTGCTGCAGATTCTTCTGCTGCATTTTCAGCACTCTGCTGATTCTGATAATTGCAATTGC CATCACAGTTGGAGTACTCTACCTTGTGTTTAACCCAAAGCTACCCAAATACTCAGTGGACAAGCTGAGAGTGACCCAGT TCAATTACTCTGAGAGTAACAGCCTTTCTGTCACCTTTAATGTGGCAATCACTGCCAGAAATCCAAACAAGAAGATTGGG ATATACTATGTGGGTGGAAGCCACATAAGTGCTTGGTATGAGGACACAAAACTATGTGAAGGGTCTTTGCCAAAATTCTA CCAAGGTCATAAAAACACCACTGTGCTTGATCTGCCTCTGACAGGGGAAACTCAAGATGCCAGTGGTTTGCAAAGTTCAC TGCAGCAACAGCTGCAACAGGTTGGGAATATTCCCCTGCATTTGAGGGTGAATCAGCCTGTGAGGATTAAGCTTGGTAAG TTGAAGCTCTTCAAAATCAAGTTCAGGGTTAGGTGCAAGCTTGTGGTGGATAGCCTTGGTGCTAATGATGATGTTAGAAT TTCCAATAGTAGCTGCAAGTTCAGGCTTAGGCTGTGAATTATATTGCGATTGCTGCTGTTTCGCGGAATTAAGGACAAGT GCTGGTTGATGCCGGCCGGAGTTTGCAGTCCTGATGCCCATGTGGTGACTCCAAAATCCATTATGTTGCTGTTGCAATTG CATTTGGGGACCATGATCTGAATCCATATGACTTCTTTTGTGCATATATTTGTTAGTATTGATTAGTAGAGTATATGCCA TTTTTATGCTACCATTTGTTTTTATTCTTTTATGTTTTTTGTCTGATTGAGATTTTTCATAAGTGATGGGGAGGATTAGA TGTGGGCTTTTCCTCTCCATCTACACTTCTAGATACAGTTTCTGTACTTTGATTCTATTTCTTCAGCCTCTTTCTTGCTC AGCATATAATATTATATATCATATCATATATGTTCAATACCAAATTTTGTTAGCTTATTCTGCACTTCCTAACACAAACA CAACAGACAGCAATTTATAGACAGTATATATCTTGTTTGTTCTTGTCCTATAGTTGGAATCTGGTTTTGATGAGTATGAT TTTTTTTTTTGGTTCATGTGAATCACACACAATTTCTAATAGGAAAATATTATAAATATATGGCTTAAATAACCTTTTGG TCCTTGAAATTGTAAAGGGAATCAAATCTGGTCCTTGTAAAATTTTCGCATTAAATTGGGTCCCTAAAATTGTTTTTTAA TCTAATTAACTCCTTTTGCTCAATTTTGACCGGTCAACAGTCCAGTGGCAAGCCTAGTCAGCTAAGGACGGCCACGTGGA TTTTTTCACATCAATTTTAGTCCCTTAAAAAAATATTTTAATCAATTTTAGTTTCTGTTCTTCCACCTTCATGTTCTTCC ACTTTCACCTTCTTCCTCTTTCTCCATAACTCAAATCACATAAATTCAAAAGGAAGAACAAGGTGAATGTGATA
CDS sequence (LotjaGi6g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATCATCAGAGAATTCATCCAGCTCATGATGTGGAATCACCAAACACACCAACAGCTCCATTGGTGCCAGAAAA TACTGCAAAATCTGATAGTGGTGATCCTACAACACCTCTTCCTCAACGCACTCATCCAGTGATGTATTCCAACCCACCAA AGAAAAGAAGAAGCTGCTGCTGCAGATTCTTCTGCTGCATTTTCAGCACTCTGCTGATTCTGATAATTGCAATTGCCATC ACAGTTGGAGTACTCTACCTTGTGTTTAACCCAAAGCTACCCAAATACTCAGTGGACAAGCTGAGAGTGACCCAGTTCAA TTACTCTGAGAGTAACAGCCTTTCTGTCACCTTTAATGTGGCAATCACTGCCAGAAATCCAAACAAGAAGATTGGGATAT ACTATGTGGGTGGAAGCCACATAAGTGCTTGGTATGAGGACACAAAACTATGTGAAGGGTCTTTGCCAAAATTCTACCAA GGTCATAAAAACACCACTGTGCTTGATCTGCCTCTGACAGGGGAAACTCAAGATGCCAGTGGTTTGCAAAGTTCACTGCA GCAACAGCTGCAACAGGTTGGGAATATTCCCCTGCATTTGAGGGTGAATCAGCCTGTGAGGATTAAGCTTGGTAAGTTGA AGCTCTTCAAAATCAAGTTCAGGGTTAGGTGCAAGCTTGTGGTGGATAGCCTTGGTGCTAATGATGATGTTAGAATTTCC AATAGTAGCTGCAAGTTCAGGCTTAGGCTGTGA
Protein sequence (LotjaGi6g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADHQRIHPAHDVESPNTPTAPLVPENTAKSDSGDPTTPLPQRTHPVMYSNPPKKRRSCCCRFFCCIFSTLLILIIAIAI TVGVLYLVFNPKLPKYSVDKLRVTQFNYSESNSLSVTFNVAITARNPNKKIGIYYVGGSHISAWYEDTKLCEGSLPKFYQ GHKNTTVLDLPLTGETQDASGLQSSLQQQLQQVGNIPLHLRVNQPVRIKLGKLKLFKIKFRVRCKLVVDSLGANDDVRIS NSSCKFRLRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 62 | 62 | - | – | |
| MobiDBLite | 1 | 54 | 54 | - | – | |
| MobiDBLite | 20 | 45 | 26 | - | – | |
| PANTHER | 32 | 248 | 217 | 2.7E-111 | – | |
| PANTHER | 32 | 248 | 217 | 2.7E-111 | – | |
| Phobius | 63 | 89 | 27 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| SUPERFAMILY | 79 | 209 | 131 | 1.14E-5 | – | |
| Phobius | 90 | 250 | 161 | - | – | |
| Pfam | 122 | 224 | 103 | 5.3E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0047800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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