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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0050400 |
| Transcript ID | LotjaGi6g1v0050400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|A0A0S3S5P0|A0A0S3S5P0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9048458..9056299) extracted from Lotus japonicus Gifu genome v1.2.
AGTCTCTCTCTCTCACTCCAGTCCATTCACATGCCCCACCCAAATCAGAACCTGGGCCCAAAACACTCTGAACTCCATTG TTGTGAACACTGCATCATCGTCACTCTCACCTCAAACTTATTTTCAACCTAAGAAGTTGTACTGTTTTTCAAGGTTTTTC TCTGTTGCATTGTTGTATGAGCTCTTCATTTTTGTGTATTTGGTTCTTTCTGGCAAATGGGTCCTTCTTACTTTCCCTGA TTTTGGTTTTCTCCTACTACATTGTGCAGAGTTGTTGAACAGAACTCTACATTGTGCATTGTTTTCTTTGCTTGTTTTCT GAAACAAGATGGCAAGAAAGAAGCTCAAAAGAAGAAAGGAAGAGATTGCGGAGGATTGGTGTTTTGTGTGCAAGGATGGA GGGCTCTTGAGGGTGTGTGATTATGGGTAAGTTCAGAAACATGAATGCATGTTATTTTTATTTTATAAAATGAAGGAGCT ATTTCTTTTTTTATTTTTGTTATCTTGAAGGTTGGAACTTGTAAAGGAGCTAAATTGAGTTTAGATTAGTTTGTAATGAA AAGAGCACTTAATATCAGTTTGTCATTTTATTAATTTATTTATTATATAAATTTGTGACTTTTACGAATATATTTGTTTG CAAAGGTGAGGTAGGTGCATACATTCTTGCCTCTGCTTGTTTGCTGCATCAATAGATGGTTGCAGATTGCAGTCATTTCT TACGTGGTGCTTCCTATTTTATAGGGAAAATACTAAATTGCATGACACAATGTTTAACGAATGGGGAAATGAAATAATCT TCACTGCTTGATTTTAATCATGTGGCTTTTCTCATTCAGTCATTGTCCTTGATTTCGGTCAAACCAGCAAAATAACTGTT CTTCTCGTTCGTGCTTTGGTTTTCTCGTGTCACATAGCATTTCTAATTGTATAGTATGTGTTTGGCCTTGCAAAATATGG ATAATTCTGAGGCAGCTTTAACAAAGAAGTTGCTGGTACTTTGGATTTTAATTTATTTTTATTTTTTGTTGATCAAGTTG TTGTTTACATGAAATTTCTGTAAGTTTGTTTGAGTAAAGCTTGGTGATCACTATCACTAGTATGATTGTGAAATTGTGAT GGATCTGGATTTCAGTCATATTACATAGATATAATTTGTCCTGTAAGTACCTTCTTTTGTATCATGTTGCTTAAAGGGAT TGCCTTAAAGCTTATCATCCTCGTTGCGTGGGATACGATGATACTTTTTTGGAGGATGACAGTTATTGGACTTGTGGTAA GCTACTTCAACCTATCACTCTACCATTATTTCAAGGCATTCGAATATGTTTTCCTTTTTTGGCATGATACATATTTCTAA AATTGATACCATACAAGTGACTGCCCATCTTATATTTCTGGGAATTATGGTCAGATGCCCCATTTTTTCTCTCGAACTTT GTAATTATCGGAAACTGCATATCTTGGTGATCTAAGAAATGCCTGAAAAGTTAGTATTTAATCAGTCTTTAACAGAGATT TCATGTATTATATGATCTTATTTTTAGTTTCCTGGCAATGTCATAGAACTCTGTGCTGGAATTAGCAACCTTGGAGAATA TTTTGTGCATGTGTTGCTTGTCATGATGAACTGAGTTTTGTCTGCTTTTTTTTTGTCAGTTCATGTTTTAGAGATTTAGG CAAATTGTCTTCTAATTCTTTTGATACTGAATTTTTTTTGAATTTTTTTTTTTGCAGGTTCACATTTTTGTGACCGTTGC CGTAAAACATCTCAGTTTAGGTGCTTATGCTGCCCAAGTGCTGTTTGTGGGAAGTGCATCTATTTTGGTGAATTTGCCAT TATCAAAGGGAAGAAAGGAGTTTGCAGACACTGCTCAAAACTTGCGTTTCTAATTGAAGGAAATGCCGATGTTGATTCTG ATGGTGTAAGATTATTTTCAATCCTTTGTCATATGCAACTAGAGAAAAAATACAAATTTGTAAATTTGACAACAAAAAAA ATAACTACTTTCTGTTTGTTTATTATTTATGTATGTTGGCAAATTGAAATATTTTGACCTAAATTACCAATCTTAGTGGG AAGAGTTGTTCTATGAATGATAAGAAAAGAAACCTGGAACACAATCTCAAACAGGTTCTTCCCTGTCCTTTTTCTGAACG GTGAAAATTGTTTTGAAAAAAATTTACAGGAACTAAATGAATAATTATTTCTTCACACCTCATTTTTGAGGTGTGGAGAG GTGGAGGAAGAGAGAGATAGGAAAAAAGGAGAGAGAAAGTAAAGATGTGATAGGTGATTTGATTGATAGAGAAAAGAGAA ATAAAGGAGAGAGAAGGTGGAAAAGGAGTGGAGAGGTGTGTATATATCATAACTCGAACTAAATTGGTAGTGTATGTTTT ACGTTCCTATATGAAATGACAAAATATAGAAAAGTCAGACTATAGTGAATTCAAACTAAAAGCATAGTGCGTCGAATATA ATGTTGGACTCTGATGAATAGTAAGTTTCACACACATGAACAAGTGTAATTTTTTAAAAAATTCCAATGTAAGCCTAGTT GCAAACTTATTTTAAATTCCTTATTAAGTAATGAACACGAGTTATTTTTTTTCTGACTGACCTTAGAAAAAGTTTTGTTG ATTTTTTTCTCTTGTTGGAAACTTGGAGCAGAGTAAGGAAATTTATATCTGGGCCTTGTATACAATTTTCTTTTCTTTTT ATCTCGTTATTTTCACACTCTTTCTTGTTAACAGGGAAATATAGATTTCAAAGATCGAGAGACATATGAATGCTTATTTG CAGAATATTATGAAATTATAAAAAAAGAAGAAGGGCTGAATTCTCAACATGTACACTCTGCCCGTAACTTCTTGAAGAAT AGCAAAAACAAGAGTGAGTTGGATCTAGATGAAATAGCTGAAGAGGAAGATGATAGTGGAGAATCTGAAGATGGAAGTGA CTTTGAAGTTTCTGATTGTGATGACCTGAATGTCAGAGATGGAGTTAAATCAGCGAGGGAAAAGAAGCACACAGAAAAGC TGAAGTCAATAAAAGGAGATAAGAAAAAAGAGTTTATTGGATGGGGTTCAAGAAATCTCATCGACTTTCTTAAATATACT GGTAGAGACACGAGCAGAGAATTATCTGAATGTGACGTTGCTTTGATCATTACTGAGTACTGCAAAGAAAACAAGCTTTT TGACCCCCAGAAAAAAAGAAATATAATTTGTGATCAACAACTAAGATCTTTACTGGGGAGGAGATCAGTGAATAGAAATA ACATTCAAAACCTTTTGGCTCCACATTTTGCAGAGAATTTTAAGGAAATGGATGATGTCACTAGTAGTTCAGAAGATAGG GATGATAATGAGCCATTCGTAATATCGACGCGGAGAAAATTGATCTCAAGTACCAAACCTTGTCAGAACATAGTTTCTAA AAAGACTCAGAGCTTCTTTGCAGCCATAATTAGTTCAAACCTCAAGCTTGTGTACTTGAAGAGGAGCTTACTGGAGGAGC TTTTGAAGCAACCAGATACTTTTGACAGCAAAGTGTTTGGAAGTTTTGTAAGAATTAAGTCTGACCCGAATGACTACTTA CAGAAGAATTCACATCTGCTCCTACCAGTAGTAGGTAATCTTTGTGATGGCTTGAAGTTAATGGTCATAATACAATTTTT CTATCTATGAAAGTATAGTAGTTCACTTTAGTTGGTAGAAAAAGAATGTTGCATAAAACCAAGTCATGCATTGTACCTAA CACACATATCTGAAAAAGGAAAATGATCTATAAAATGGAAAGCTTTCAGTAGAGTGCTCTTTAGTGGCACAGTGCATTTC TCTAGAAGGTCAACATGAATGATGTTCTTTTACTGACTACCATACTTTCCTAACATGCATATACTGACATTACGAATTTG CGTCCACCACAGGAATAAACAGATCTTCAAAGAATGATGAAAACAACAAAGAAATTCTGCTCAAACTTTCTCATGTGCCA AAAGGTGTACCTATCTGCAAAATTTCAGACGATGATTTTACTGAGGTATTAATGCTGTTGTAACTTGTAACAGGATTTTC TGCTGTAACTTTGCCCGTTTCAAGAGACATTGGAGCAAAATAAGTAGAAGTTACTGAAAAAATTTGGATAATTCTCATTC TTTAAATCATTTTTTGAAGATGTTGAGTGTTGATTATACTGTATAATTTCGTGCCTAAGAGCATAGATGGGTTTCTGAGG TGATCATTGTTTTATACTCATAGGGGCTCTTTGTTGTTATCTCGATCCCTATTCTCTTAAGGAATTTATGCCCACCTTTC AGGATTCAGCTTCAGAGTCATTTATAATTTTAACATTTAGCATCATCTGCAGGAAGAGTGTCAAGATCTGTATCAGAGAA TGAGAAGTGGTCTACTCAAACAGCCAACTATAGTAAGTTTGTTGTGTGTGAGTGGTATCAGCTTAGTGTGCACCATAAAA AACTTTATGCTCAGTGATCTGATCAAATATAAGTAAGGTCCTTGTAAAACCTTTCTGGTTTTAGTAATACAACTATATTA TTATGCGGTGCAAAAATAGGCTGGCTGTATTAGAAAATATCTGCAAAAAAGGCAAATGAAGTATAAATTGTATAATAATT AATAAAAAAAATTATTGAAGCTCCCATGTTTTTACTCTTGAGCATTGAAGGCAGAGTCTAATTTCTCCCATTTTCACATC ATGCCCAATCTAACATTCTTTTATGCTTAATCCTGTAAATGAAGCTAATATATATATGTTAGTAACATAAGGATGGGACA AGTGAACCGGGGGAAGTGGAGAGTAGAGGGATGGATCATACCGTATATGATATAAATCATGGGAAGTAGCATTAATATCA AAAGCTTCCTGAGAAACAAAATCATGGTATATATTGAAGGCCATATATCTAGGTCAGTTCAGTACTAGTTTTGGGTCAGG ACCTGGAAACTTTTAATTTCAGCTATTTTAGGCCATATTGATTGTATGGGCTTTCTCTCGTGGTGCGATCTTTATGCTTG TTATGAGAAAGAGTTTGATTTGTAAAAATATAATTGATTGAACTTGTAGAATAATGTGAATAGTTCATAACCATATCTGT GTTTTACAGCTGGAGCTTGAGCAGAAAGCTAGATGTCTGCATGAAGACATAATAAAGCATGTATGTAGCATATAAATATT GCTGTGTAAATCCCTTTAGCTATTATAAACGTATTATAAGTGTAGAACTCAATATAATTAAAAAGTGCAATTTCTTGTTG TAGAGCAAGTAAACAGGAAAAAAAACTCATTATTTTCCCAAATTCAGTGGTAAAATGTAAAAACTCATAATATTATGCAT AGAATTTAGAATCTTATGAAATTTTGTTAAGCACATGCCAGGAGGTACTAACTGAAATCTCTCTCTTCTGCTTTATATGG CAGTGGATTCCAAGAGAGTTAGCATTGTTACAGAATCGCATTGACCAGGCCAATGAAAAGGGACGGAGGAGGGAATATCC TTTCATGATATAGTATTTTTTCTAATGTTACCGAAGAGTAGTAACTAAAGGCCGAAATGTTATAATTGTTAATTTGTTAC CTAGTTTAATGCTTTCAATATCACCTAATCACTTTCAAATTGGAGAGAGTTGTCAAGTAGTGTGAAAGTTGTTATATTGA TTCGATTTATGATGTATTGTTTTCTGTTCTTCTCTGCATGGTAATGATATTTTATAATAGCTGTGAATGGGCAATTTGGG CCTTAACCATATTTCCATACACTTTCTGAGTACTTGGACAGAAAACTGAAGCTTGAGACTCCATTGGAACAATCACTTTT GTTAAGTAATATTCCAAAAGTAATTCCTGAAATAGTTGATACCAATCCATCACCGGAGGGTTCACCAAGTAAAGATAAGC TTGAGCAAAATGGTTTGCCAGAATTAGCCATTGGAGAGACTTGTGACTCTGATGGATGCTACTCCAAACACAATGGTTTT GCTCGATGTCTAAATAAAAGAACAGATGTTGCGGATTTGCCAGGTTTTCTTGCCTGTACTCCCTCAGTTTTCCTTATGTC CTTATAACTTCAATTTGTTTTCTGTTAAAAATATTCTCTGTTGGTCAAACATTAATGGAGTTGTTGATTTAAATGGTCTG TCATTAAACTTGATTCCTGACAGGATATTATGATATTGTTTAATCCATGTAGCCCACTTCAACTAGTGGGAAAAGGCCCA CTTCACCCACTGGGAAAAGGCTTTGGTTGTTATTAAATTTTTCTTTCTATATAGGACGTTCTTGATATTGCATCTAACCT TGGTTGTGTTAGCTTGACCATGGTTCTAACTTCTAACAACTCGCCTATGTTTGATATTTTTTTCCATTGCTTCTCTTCTT ATTATTGATGCTAACATTCTTTTTCTATTTACAGTTGAGAATGATATGGATCCTTCTGACTTGATGACCCAAATCCTTGC AATTCAGGAGCAACAAAAACATAAAGTTAGTCAAGATGCCGAGCAAGCCAAGGATCAAGAAAACGACCCGACCACCCTTG TTGCTGATGGAATTGGCAAGCAACATGGAGCTCCTGATTTTGGAGTTGCTGATAATTCTAAGGCCAGAATTGGTTTCACT TCTGATCACAACATTCTTGTAGGTTCCTCAACAGTCCCTGATCCGACTGTAATTGATGACAGGAAAAGGAAAAATCCAAG TAAAACAGAGCCAGTGAAGAAAAAGAAGACTAAAGCTGAGATAGAGGAAGAGAAAAAAGAGATGCAAGCTCATGAGAAGA TTCGTCTTTGGGATCCTGAATTCCTAAAGACTCCCATTGACTTCAAAGATGTTGACGATGGTCAGCTTGATTCCTTAAGC ATCCAGGAAATCATTGATTTAACGGTCAAACAAAGTTTAAGGACTGCATCTGTTGCTCGATCCTTGGGTTCGGTTGTCAT TCCTTACTATGAGGAAACAATAATGAAACACACCCAAGCAGCAGAAATGAGTAAAAATGGTATCATAAGATTAAGTACCA AGCTTACTGATGCCGAGCAAGAGAGAGATAAGCTGGCAGAGAAGGTGAAAACTCTCATTTCAAAAATGGGAACTCTTGAA GAAGATGTTCTCAGCTTAAAGACTAAGTGTTCTTATGCTGAAGCTTCTGCTACCTCTGCCGCTGCCTCTTTTGAAGAGAA GAAGAAAGAAGTTGAAAACCTCCAAAAAAAGATTAAGATGGATGAAGATAAGATCAATTCTTTGATGACCGAGAAAGAAA ATTTCTTTAAGCTCCTTGAAGATGAGCAAAAAAAGAATAAGAGTGCTGAAAAATCTCTTGAGTCAAAGAAGAAAGAAGTT GAAAACCTCACATCTTTACTTCTTAGGGCGGCCAAAGGAGCTTTTGACAATGCAGTCAATCAGCTGACAATTCTTAATCC CGGACTCAAGATTGAAGGAGCTGCTTCTGATAGGGTTGCTCGGGAAGGGAAAATTTGTAATGTTAAGGAAGGAAAATGTA TTCCTTGCCCGGATGTTCATCCTCCTGAGTAATTTAATTTCCTGTTTCTCTTAGTAATGACTATTTAGACCTGATATGGT CTTCCTTTGAGAATATCTTGAATTAATGAAGTTTTCATTTCATCTTGAATAGTGGAGAGTCGTGAGATTTCTATTTGGCA TTGTTTGGAAGACAGGTCAGTACTCAAACGTTAGAGTGAATCTACCTCTCATCCCTTAGAATTAAAGGTATGGAAAACAG GTCAGAGTGAGAAGGAAAATATACTTCTCACTGATGCACTTGACCAAAAATTTCCCAGTTTGTAGGTGAATGGGAAATGG AG
CDS sequence (LotjaGi6g1v0050400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGTCACTAGTAGTTCAGAAGATAGGGATGATAATGAGCCATTCGTAATATCGACGCGGAGAAAATTGATCTC AAGTACCAAACCTTGTCAGAACATAGTTTCTAAAAAGACTCAGAGCTTCTTTGCAGCCATAATTAGTTCAAACCTCAAGC TTGTGTACTTGAAGAGGAGCTTACTGGAGGAGCTTTTGAAGCAACCAGATACTTTTGACAGCAAAGTGTTTGGAAGTTTT GTAAGAATTAAGTCTGACCCGAATGACTACTTACAGAAGAATTCACATCTGCTCCTACCAGTAGTAGGAATAAACAGATC TTCAAAGAATGATGAAAACAACAAAGAAATTCTGCTCAAACTTTCTCATGTGCCAAAAGGTGTACCTATCTGCAAAATTT CAGACGATGATTTTACTGAGGAAGAGTGTCAAGATCTGTATCAGAGAATGAGAAGTGGTCTACTCAAACAGCCAACTATA CTGGAGCTTGAGCAGAAAGCTAGATGTCTGCATGAAGACATAATAAAGCATTGGATTCCAAGAGAGTTAGCATTGTTACA GAATCGCATTGACCAGGCCAATGAAAAGGGACGGAGGAGGGAATATCCTTTCATGATATAG
Protein sequence (LotjaGi6g1v0050400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDVTSSSEDRDDNEPFVISTRRKLISSTKPCQNIVSKKTQSFFAAIISSNLKLVYLKRSLLEELLKQPDTFDSKVFGSF VRIKSDPNDYLQKNSHLLLPVVGINRSSKNDENNKEILLKLSHVPKGVPICKISDDDFTEEECQDLYQRMRSGLLKQPTI LELEQKARCLHEDIIKHWIPRELALLQNRIDQANEKGRRREYPFMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 205 | 200 | 8.0E-88 | – | |
| SMART | 46 | 152 | 107 | 1.6E-28 | ||
| ProSiteProfiles | 46 | 175 | 130 | 27.877 | ||
| Gene3D | 46 | 172 | 127 | 3.8E-14 | ||
| SUPERFAMILY | 47 | 172 | 126 | 2.09E-24 | ||
| Pfam | 51 | 150 | 100 | 2.5E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0050400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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