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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0051000 |
| Transcript ID | LotjaGi6g1v0051000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GDP-4-keto-6-deoxymannose-3, 5-epimerase-4-reductase; TAIR: AT1G17890.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9LMU0|FCL2_ARATH Putative GDP-L-fucose synthase 2; TrEMBL-Plants: tr|I1L759|I1L759_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9142634..9145094) extracted from Lotus japonicus Gifu genome v1.2.
CAACAGTGTTATGTAGCACACAGTGAGAAAAGTGAGAGGAGGAGGAAAACACAAGAGATTGTGATCTGATCTCACCGGTA TCCCTCAGATCTGAGCTACCACCGTCGTAGTCACCGGAGTTCAATTCAGGCTCCGCCGGTGGGTCGAATCCGCCATTACC CGCAAGGCGCAAACCCATTCATTCATTCGTTTCAAACTCTCAATAATAAGAGCTTTTGGAAAGTTCATTTGGTTCGCTTC GAATTCGAGGTAAATTTTCGATTTTTCCTGCACCCCATGTCTCAATTCGTCGTTTTGGAAGTGGGTTCTCATTCACGTTT GAAATGCGAATCGGAAGATGCTGTTTGTCAATTGGTAACTTGTTGCGTTGCTTTGTTCTTTATTGTTAACTTGTTCATTC TGTGGTTCTGTGTCAATGACTCGTTTCAGGGTTTGATTTGGGGATTGAAAGCTCGAACTAGCCTTGCTTCAAGCACCAAA AATGGGAAACCATGAAATCAATGGTAATTATTCTGATTTGAATCTCTTAGTGTGTGTTCGGATACCGGTTAAGTGCTACA TGAATGAATTTTCATTTCAATTCATAAGTAGAGTTTCGTTCACTTTTTGTCTCAAACTCGAAGTGTCAGCGCTTAACACT TATGTCATTGATTATTCAATCATAGTCTAAATTTTTAGATTAGTAATGCTACTCAGCAGTAAAGTTTGAATGAATTCGAT TACAATTTGACTAGATTCAAAGTTGTTTATTAGATGAGGGGAGATTATAGTCCAAGTGTCAATAACAATAACAATGCTAA CTCATTCTGGCAAAACTTATTGCCAAAATGAAAGAAAAATCGTTTGTGGATTTTGAATATCTCAATTTGTGATTTTTTTT TTCTTTTTGTGCATTTGCAGCTGCATTGTTATCAAATTCATTTCTAGCTGATAAATCTGCTAAGGTTTTCGTTGCTGGTC ACCGGGGTCTTGTTGGCTCAGCCATTGTTCGCAGGCTGACCCAACTTGGGTTTACTAATCTAATTTTGAGATCTCATGCT GAGCTTGATCTCACGAGCCAAGCTGATGTTGAAGCCTTCTTTGCCACTACGAAGCCTGAGTTTGTCATTGTAGCTGCAGC CAAAGTTGGTGGTATCCATGCCAACAATACCTACCCTGCTGATTTCATTGCCATCAATCTCCAAATCCAGACCAATATCA TTGATTCTGCTTATCGCCATGGTGCTAAGAAGCTTTTGTTTTTGGGTTCCTCTTGCATTTACCCCAAATTCGCACCCCAA CCTATCCCAGAAGATGCTTTGCTTACGGGCCCCTTAGAGCCCACAAACGAATGGTATGCGATTGCCAAGATTGCTGGGAT CAAAATGTGCCAGGCTTACAGAATTCAGTATAAGTGGGATGCAATTTCAGGGATGCCAACCAACTTATACGGACCGAATG ACAATTTTCATCCTGAGAATTCACATGTTTTACCTGCATTGATGAGAAGGTTTCATGAGGCAAAGGTCAAAGGTGCCAAG GAGGTGGTGGTGTGGGGTACAGGGAGTCCACTGAGGGAGTTTTTGCATGTTGATGATTTGGCAGACGCGGTTGTTTTTAT GATGGAGAAGTACAGTGGAATTGAGCATTTGAATGTAGGGAGTGGAAAGGAAGTTACTATTAAGGAATTAGCTGAACTGA TGAAGGAAGTGGTGGGATTTGAAGGGGATCTTGTTTGGGATGCTACTAAGCCTGATGGGACTCCAAGAAAGCTTATGGAT AGCTCCAAGCTTGCAGGCCTGGGTTGGACTGCCAAAATCTCACTCAAGGATGGGCTTGTTGATACCTACAAATGGTATGT AGAGAACATCTAGCATGTTTGACTTTGTAGTTTTTCTTTCCTCAGAATCAATTATGGAAACCAGAAACTACTCACAGAAA CTTCTCTCTATAAATGATTCAGACTTTTGAATCCATTATAGAAGAAATTTCAAACATGCATATCGCCCATGTATGATTCA GCTGGTTAAGTGGAATGTGCCATATCAAAATTATAGATTTATAGGTACTTTACATTTCACTTTGAAGAAATGTTTTTTTG TACTATAATAATTATCCATAGAAACAGTATATGACCAATTTCTGTACCAATTATGTGGAATGAATACTAAAGTGCTATTT GGGTTCTGTTGGTTTTCTAGAGAATTCATGAAAATCAAGAGCCACCGTTGAAAACAATTCGTATTACGGGTGGTGGGTTT GGTAAATTCATGTGGTGTTATACTAGTTTGCCATTCTGGTTTTACTTAGGGGACAGATGATTCAATCCATGCCATTGGTA ATTATTATTAATCATTATCTGAAGAATTACTGGTTTGGTAATTTTGTATTTTAACCTCGCATGCATGGAATGGGTTCGGT AATTTTGTATTTTAACCGCGCGTGCATGGAATGACTTTCAACGTCAGGGGTAATTTTGTTC
CDS sequence (LotjaGi6g1v0051000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACCATGAAATCAATGCTGCATTGTTATCAAATTCATTTCTAGCTGATAAATCTGCTAAGGTTTTCGTTGCTGG TCACCGGGGTCTTGTTGGCTCAGCCATTGTTCGCAGGCTGACCCAACTTGGGTTTACTAATCTAATTTTGAGATCTCATG CTGAGCTTGATCTCACGAGCCAAGCTGATGTTGAAGCCTTCTTTGCCACTACGAAGCCTGAGTTTGTCATTGTAGCTGCA GCCAAAGTTGGTGGTATCCATGCCAACAATACCTACCCTGCTGATTTCATTGCCATCAATCTCCAAATCCAGACCAATAT CATTGATTCTGCTTATCGCCATGGTGCTAAGAAGCTTTTGTTTTTGGGTTCCTCTTGCATTTACCCCAAATTCGCACCCC AACCTATCCCAGAAGATGCTTTGCTTACGGGCCCCTTAGAGCCCACAAACGAATGGTATGCGATTGCCAAGATTGCTGGG ATCAAAATGTGCCAGGCTTACAGAATTCAGTATAAGTGGGATGCAATTTCAGGGATGCCAACCAACTTATACGGACCGAA TGACAATTTTCATCCTGAGAATTCACATGTTTTACCTGCATTGATGAGAAGGTTTCATGAGGCAAAGGTCAAAGGTGCCA AGGAGGTGGTGGTGTGGGGTACAGGGAGTCCACTGAGGGAGTTTTTGCATGTTGATGATTTGGCAGACGCGGTTGTTTTT ATGATGGAGAAGTACAGTGGAATTGAGCATTTGAATGTAGGGAGTGGAAAGGAAGTTACTATTAAGGAATTAGCTGAACT GATGAAGGAAGTGGTGGGATTTGAAGGGGATCTTGTTTGGGATGCTACTAAGCCTGATGGGACTCCAAGAAAGCTTATGG ATAGCTCCAAGCTTGCAGGCCTGGGTTGGACTGCCAAAATCTCACTCAAGGATGGGCTTGTTGATACCTACAAATGGTAT GTAGAGAACATCTAG
Protein sequence (LotjaGi6g1v0051000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNHEINAALLSNSFLADKSAKVFVAGHRGLVGSAIVRRLTQLGFTNLILRSHAELDLTSQADVEAFFATTKPEFVIVAA AKVGGIHANNTYPADFIAINLQIQTNIIDSAYRHGAKKLLFLGSSCIYPKFAPQPIPEDALLTGPLEPTNEWYAIAKIAG IKMCQAYRIQYKWDAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVF MMEKYSGIEHLNVGSGKEVTIKELAELMKEVVGFEGDLVWDATKPDGTPRKLMDSSKLAGLGWTAKISLKDGLVDTYKWY VENI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 324 | 315 | 1.2E-194 | – | |
| PANTHER | 10 | 324 | 315 | 1.2E-194 | – | |
| SUPERFAMILY | 19 | 323 | 305 | 1.06E-78 | ||
| Hamap | 20 | 322 | 303 | 50.841 | ||
| CDD | 22 | 320 | 299 | 0.0 | ||
| Gene3D | 23 | 311 | 289 | 3.8E-108 | – | |
| Pfam | 23 | 254 | 232 | 5.2E-76 | ||
| Gene3D | 185 | 320 | 136 | 3.8E-108 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Nucleotide-sugar biosynthetic process | The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi6g1v0051000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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