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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0052300 |
| Transcript ID | LotjaGi6g1v0052300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT1G65910.1 NAC domain containing protein 28; Swiss-Prot: sp|Q9FFI5|NAC86_ARATH NAC domain-containing protein 86; TrEMBL-Plants: tr|A0A0B2QRC9|A0A0B2QRC9_GLYSO NAC domain-containing protein 74; Found in the gene: LotjaGi6g1v0052300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9338437..9343861) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTGCTAATTCCCAACATTCTCTTTCAGCTAATTCTTCTTGCATTTCTCTCTCCCTGTTCTTGACTTTGGATCTTCT TCCTCTCTTATCAAGGTCTTTCTCTTTAATGCTTGGCTATGGAACTAGATTATTTTTGTCTTTTTCATACATGTTTCACT CGTTTGAGAAATTGTAGTTGTCTCTCCAAACAAATATTTTCTTAGAATTCAAATTTATATTTTCATCCTTACAATAGTGT AGCATGTTTATCTGTTTGCAAAATGATTTTTTGGTCTTTGACCGACATCTTGTTAGTGTTATGTTATTTTTGGAAAGCTT GTTAGTGTTATGTAATTAAATGCATGCGCACTACATAAAGATATTTATGTTTGATCAAGTTAGCTAATAAGGTTCTAAAT TTTTTGTGACAGGGTATTGAATACTTGGTCATTGTTACTTGGAATTGAGCCTTGTGACCTGATTTTTTAGGGTCACGAGG CAACTACCAGCTCCATAGTTAGCTCATCAGTTGATTCCTTTATACATATATGGCACCTGTTTCATTGCCTCCTGGGTTCA GGTTCCACCCCACAGACGAAGAACTTGTTTCTTATTACCTCAAGAGAAAAATCAATGGTCGTAACATTGAGTTGGAGATC ATCCCTGAAGTTGATTTATACAAGTGTGAACCATGGGATTTGCCAGGTAAAGCTAAACAGATTTTTTTTCATTCTTGCCA AGTTGTTGTCATCTCTCATTTTTATTTGTCATCTCTCATAATTCACCAGTAAGAGAAAATTTCATCATTTTATAATTTGA TTCACTAATATCTAAAAGTTTTTCTTGTTATCTAGCTTAAGATTTGAACATTGACTATGACTATGAGAGAATCCCACTAC ACACATAGAGAGTAGAGACTAACAAAATCATGAGGAGGCCTACGTTTAAAACATCCTTCACTTTCTTTTGATTGGCAAAT CATTATTGGTTAATGGGCCTGCATTTCTCTAGGCACTTTTAACACTTTTAACAATCCAACAAAAGAATCTTAAAAAAATG GGCCTGCATTTCTCTAGGCATTATTTGCTTCTGATCTTATTCAATTATGAAACACCGACTCTCTTTATTGGTCAAGTATA TTTTTCTGCTTTTGCATAAAATATTTAGGGGATGTATGTCCTTGTGGAGGATGGTCCTTCAACTAAGGGTTCCTACTTTG AACGTCAAGACATAGTAATGTGGAAATAGTGGGATTCCCACGTAAAAAAAACACAGTCAACAAAAGAAAAGGACTACATT CTCTAGTCTCTGCATACATCATATATACATGACTGCCATGCAATCTACACTTGACATTTCTCATCTTGATTGCATTTTCT TTTCTTACTCATCTGCTTTACCATTGAACAAGTCTGGTTGGTTAAAAGTCTTTCTAAGAGTTCTGCTTTTAATGATCAAT TTTTCTACCCATGATTTTAAACGGTTACTTTTAACCACTGAAACCGGCACACATCTCAATCAATGACCAAGTTTGATATT GAAAATATAAGTTTTATCTATTCAAAAAAATATTCTAGCATTCACCAAACAAAACTAATAAGAAGAGAAAATAGAAGTTT ACAACTTTTCATGATTATCAGGTAAACCAATTACTACAAGTATTTGTGAAAATGTTAATTATGACAATGCAGCGCATGTT TGGACAGTTGAAACTAAAATTAAAAACCAATTTTGAAGAAACGCTTTTGTGAATAGCTTTTGATATCAATATGGTGTTAG AATTGATTACGAAAATAAATGAAGTTATTCATCATATATAGCTATAACCCAATTGATACTTACAGGGAAGTCATTGTTAC CGGGAAAAGATTTGGAGTGGTATTTCTTCAGCCCTCGAGACAGGAAGTACCCAAATGGATCAAGAACCAACCGTGCAACA AAATCTGGATATTGGAAGGCCACAGGGAAGGATCGTAAGGTGCACTCTCAGAGTCGAGCAATTGGAATGAAAAAAACCCT AGTTTACTATCGAGGAAGGGCGCCACATGGATCTCGCACTGGTTGGGTCATGCATGAGTACCGTCTTGATGAGAGGGAAT GTGAAACTGCTACTGCTTCAGGCTTGCAGGTTCAACACCTCCTTTCCTTTCACCTCTCCTCTTCCTTTTTTCTGAAAAAA AAGTTTATCTAAATGTGTTATTTTCGGTTTTCATACCATCGAAACTAAAATAGTCTATGTTTCTTGGTCTTAAGGCGTTT TGGACTAGACCACCATTTCAACTCATACTAATACATTCTCTGTAATCCATAGTAATATTTTGGGCCTTTTGCACTTTCAA CCCAACACTTTTCGGTTGAACTCAAAAGTCGATAATGTTTAAATCAATATTTTCAATTTGTTTATCTATTTTTAGCTTTG AATCTGTGAAATCATATTTGTGTTGACGTAAACTAAAAGTTAATAAGGTAGTACCATTGCTTTAAATATATTTCTTGAAT AAAATCAAGTGTTATTATAAAATTTAGAATTACTCATGTCATGTTTGAATTTACAAATGTTTTAAATCCATAGACATCTG ATTATTCTTTCAACTGATACAATAAATAATTTTCATTTTAAAATTCTAGAGGATAAAATTTGATTTTATTTACAAATTCT AATTAATTTCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGAGTACAGTGATTGCCCCAAAAGTTGGGGAGCAGTA TGTTAATGTCACCAGACATGCAAATCAGATGACAAGTGAGCAATCATCAAGCATTGAGCTCTATTCTGAAGGAAGAGGAG AAGTTTTAGAGAGCACAAATTATTTGATGCCGTGGGATACATGCTCAACCCAAAACGTAAATGGGGCTCCAGCATCTTAC TCATCATTTCCCAATAGTGGCACAAGGGATAATGGGATGTGGTCACAGTTCTCATCCGATGACTTGCTCAATCTTCCAAC ATCTTCTTCATCATTTCCCAATTATGGAGCCATACCTTACCCACCATCCAAGGTACTATAAGTTTTTTACACAAATTAAA TTTGGCAAATTGCAATTACGATACTTATAGCGTGTTTGGATGTGCACCTGGCACACTTCAAACACATTATTTTAAAAAAC ATGTTATTTTAAAAAGCTACAAGTTGTAGCTTATGATTCAATGGTAATATGTAATTTCTGGAAGTGAATCCAGGCATCTA AGACACGTTATTTCAAAAGCTACACAATGTAGCTTATTATTGAACCGCTTCCCTTAGGTCATAGCTAGATTAACAAGACA GCTTAAATTTTACCTCACAAATCCAAGGCACTACAATGTCTTGTTTACCCTTTACATGATTTAATTTGCAGGTGGATATA GCACTAGAATGTGCAAGGATGCAGCACAGGTTTACCATGCCTCCCTTGGAGGTAGAGGACTTCCCACAAGTTGGCAATTC TGAGCTGAAGATGATGACACAGGCCTCGGGTTCCATGTCCGGAAGCAAACGTGAAACAGATATCTTGCAGGAAATTCTTT CAGTTGCTCATGTTTCCCAGGAATTGATAAACCAATCCAGCTACTCACAGGCATTATGGGGAAGCAATAGTGACAATTAT GCTCCTCATGAGAATGATTTTACTTTTATGGTTGACACTAATAATTACAATCATATGAATGACATGAACTCCTTGAGATA TGTTGACAAAGCATGGGAAGATCCAAATGCAAGATCAATAGACATCATAGGAGATCTTCATGATGACTTCAAGGCTGATC AGAGGATGGTGGAGAATTTAAGATGGGTTGGAATGTCAAGCAAAGATTTTGAAAAGGTATGCCGTAATGCTAATATTTAA TTTATTAACTTGAAAGTACTGCATATTATATTTGCACATATTTCTTAATTATAACAATCATACAAACCCATTAGCTTAAG GTAAAGATCCCAATATGGATTTTAAATTTATATATAAAATTTAGTAATTTAAACATATTTGCAATCACTTAGTGCGAGCA CCCCATAACAAAGGAATTAGTCGATGCAGTCTACTAGTAACACAATTCTTGGAGGATACATGTGAAATAGATTGGGAATT GCTAGTCTAGGATGTATGTATTTGTTAATAAACTGAGTTATGATATATAGTTACATACACACCTTCACCCATTTTTCACC TTCAATTTCTATCTATTTTCATCTTATTTATCAATCAAATCACTTATCACATCTTTATTTTTTCTCTTTTTTTTTCCTCT TTCTTCTTCCACCTCTCCACACATCAAGAGTGAGGTGTGAAGATATTATTATTCTAATAAGCTAACATTCGATTTGATGT TTATTTGCGCAATTTGTCAGAGCTTTATGGAAGAGCAAAAGGTAGTTCCAATTGAGGATATTTCGAGCTTCCAAACTATC AGGGAAGAGAATGAGGTGCAAGGTATTAAATCAATTAAAAGTTTTGTACATGATATTGCTTTTTCTAATGATCATTGGTG ATGTAAATTTTTCTCATTTTATTTTAACAACAACTTTTATTGAACTTTCATTTGCAGCAGAATCTGAGCAACAAAATAGC AACAAAGAACTCAATGATACTGACATTGACAATTTCTCATTGGAGTTCATCAATGATGATGACCCCAATGTGAACTTTAT TGATGATGGCAACATTGACTATTCAAATTCTTCAAGCTTTGAGGTAGTAGAGGAAACAAAAGTGAGTCATGGAATGTTTG TTTCCACTGGCCAAATAGCCGAGACATTCTTTCATCAAATAGCTCCTTCACAAACTATCAAAGTTCAACTTAATCCAGTA ATGACAAACAAACATTCTATAGAGAATGCAGAGACAATGGTTATAAATCAAGAGTACTCTTTGTTTTGGAAGTTTAAGGA CTATGCGTTGGGGAAGCTGATAAAGCCATCAAAGACAACAGCAAGTGCACTTTTATACATCTTTGCAATTTTGTTGATGC ATGGTGGTTATTTGAAGGAACAAGTGGAAGATTGGAAACCAGACCTTGTGGATGTAAAAATGAGATCCCAATCAGCTGAG AAAATAACATGGTATGAGGAAGAAAAAATTGGGATTGTTGGTATCAAGTGTGGGAAAGGATTTAGTGTGGTCTTGAAGAA GATAGGCATCTTCCTCACCATATCTTTTGCTCTTTGTACCGTGTGGGCTAACCACATTACAGTGAGCCCTTGAGCTCCTA ATTAATTTCTTTTTGTTTTTAGCTTCTAACTTAAGAATTTTATATAGAAGGATCAAATTATTACATTCTAAAATTGGGTT TCCCCCACCAATTTACTAGGACACATTGTACCAAGATATATACTTGTATTTTAATTCATTAATATGTAATTTCAAATTCA TTCAATCATTTTTCTTTTATCTTGTCACCCGTTCGGGAAACAATTGCATGTTTCTTTCAATAAAT
CDS sequence (LotjaGi6g1v0052300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCTGTTTCATTGCCTCCTGGGTTCAGGTTCCACCCCACAGACGAAGAACTTGTTTCTTATTACCTCAAGAGAAA AATCAATGGTCGTAACATTGAGTTGGAGATCATCCCTGAAGTTGATTTATACAAGTGTGAACCATGGGATTTGCCAGGGA AGTCATTGTTACCGGGAAAAGATTTGGAGTGGTATTTCTTCAGCCCTCGAGACAGGAAGTACCCAAATGGATCAAGAACC AACCGTGCAACAAAATCTGGATATTGGAAGGCCACAGGGAAGGATCGTAAGGTGCACTCTCAGAGTCGAGCAATTGGAAT GAAAAAAACCCTAGTTTACTATCGAGGAAGGGCGCCACATGGATCTCGCACTGGTTGGGTCATGCATGAGTACCGTCTTG ATGAGAGGGAATGTGAAACTGCTACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGAGTACA GTGATTGCCCCAAAAGTTGGGGAGCAGTATGTTAATGTCACCAGACATGCAAATCAGATGACAAGTGAGCAATCATCAAG CATTGAGCTCTATTCTGAAGGAAGAGGAGAAGTTTTAGAGAGCACAAATTATTTGATGCCGTGGGATACATGCTCAACCC AAAACGTAAATGGGGCTCCAGCATCTTACTCATCATTTCCCAATAGTGGCACAAGGGATAATGGGATGTGGTCACAGTTC TCATCCGATGACTTGCTCAATCTTCCAACATCTTCTTCATCATTTCCCAATTATGGAGCCATACCTTACCCACCATCCAA GGTGGATATAGCACTAGAATGTGCAAGGATGCAGCACAGGTTTACCATGCCTCCCTTGGAGGTAGAGGACTTCCCACAAG TTGGCAATTCTGAGCTGAAGATGATGACACAGGCCTCGGGTTCCATGTCCGGAAGCAAACGTGAAACAGATATCTTGCAG GAAATTCTTTCAGTTGCTCATGTTTCCCAGGAATTGATAAACCAATCCAGCTACTCACAGGCATTATGGGGAAGCAATAG TGACAATTATGCTCCTCATGAGAATGATTTTACTTTTATGGTTGACACTAATAATTACAATCATATGAATGACATGAACT CCTTGAGATATGTTGACAAAGCATGGGAAGATCCAAATGCAAGATCAATAGACATCATAGGAGATCTTCATGATGACTTC AAGGCTGATCAGAGGATGGTGGAGAATTTAAGATGGGTTGGAATGTCAAGCAAAGATTTTGAAAAGAGCTTTATGGAAGA GCAAAAGGTAGTTCCAATTGAGGATATTTCGAGCTTCCAAACTATCAGGGAAGAGAATGAGGTGCAAGCAGAATCTGAGC AACAAAATAGCAACAAAGAACTCAATGATACTGACATTGACAATTTCTCATTGGAGTTCATCAATGATGATGACCCCAAT GTGAACTTTATTGATGATGGCAACATTGACTATTCAAATTCTTCAAGCTTTGAGGTAGTAGAGGAAACAAAAGTGAGTCA TGGAATGTTTGTTTCCACTGGCCAAATAGCCGAGACATTCTTTCATCAAATAGCTCCTTCACAAACTATCAAAGTTCAAC TTAATCCAGTAATGACAAACAAACATTCTATAGAGAATGCAGAGACAATGGTTATAAATCAAGAGTACTCTTTGTTTTGG AAGTTTAAGGACTATGCGTTGGGGAAGCTGATAAAGCCATCAAAGACAACAGCAAGTGCACTTTTATACATCTTTGCAAT TTTGTTGATGCATGGTGGTTATTTGAAGGAACAAGTGGAAGATTGGAAACCAGACCTTGTGGATGTAAAAATGAGATCCC AATCAGCTGAGAAAATAACATGGTATGAGGAAGAAAAAATTGGGATTGTTGGTATCAAGTGTGGGAAAGGATTTAGTGTG GTCTTGAAGAAGATAGGCATCTTCCTCACCATATCTTTTGCTCTTTGTACCGTGTGGGCTAACCACATTACAGTGAGCCC TTGA
Protein sequence (LotjaGi6g1v0052300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPVSLPPGFRFHPTDEELVSYYLKRKINGRNIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRT NRATKSGYWKATGKDRKVHSQSRAIGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECETATASGLQDAYALCRVFKKST VIAPKVGEQYVNVTRHANQMTSEQSSSIELYSEGRGEVLESTNYLMPWDTCSTQNVNGAPASYSSFPNSGTRDNGMWSQF SSDDLLNLPTSSSSFPNYGAIPYPPSKVDIALECARMQHRFTMPPLEVEDFPQVGNSELKMMTQASGSMSGSKRETDILQ EILSVAHVSQELINQSSYSQALWGSNSDNYAPHENDFTFMVDTNNYNHMNDMNSLRYVDKAWEDPNARSIDIIGDLHDDF KADQRMVENLRWVGMSSKDFEKSFMEEQKVVPIEDISSFQTIREENEVQAESEQQNSNKELNDTDIDNFSLEFINDDDPN VNFIDDGNIDYSNSSSFEVVEETKVSHGMFVSTGQIAETFFHQIAPSQTIKVQLNPVMTNKHSIENAETMVINQEYSLFW KFKDYALGKLIKPSKTTASALLYIFAILLMHGGYLKEQVEDWKPDLVDVKMRSQSAEKITWYEEEKIGIVGIKCGKGFSV VLKKIGIFLTISFALCTVWANHITVSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 576 | 576 | - | – | |
| PANTHER | 3 | 459 | 457 | 3.4E-138 | – | |
| PANTHER | 3 | 459 | 457 | 3.4E-138 | – | |
| SUPERFAMILY | 4 | 158 | 155 | 1.7E-64 | ||
| ProSiteProfiles | 6 | 158 | 153 | 61.997 | ||
| Pfam | 7 | 133 | 127 | 6.1E-41 | ||
| Gene3D | 15 | 162 | 148 | 1.1E-61 | ||
| Phobius | 577 | 595 | 19 | - | – | |
| Phobius | 596 | 644 | 49 | - | – | |
| Phobius | 645 | 665 | 21 | - | – | |
| Phobius | 666 | 667 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0052300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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