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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0053500 |
| Transcript ID | LotjaGi6g1v0053500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | voltage-dependent L-type calcium channel subunit; TAIR: AT5G16550.1 voltage-dependent L-type calcium channel subunit; Swiss-Prot: sp|Q8K449|ABCA9_MOUSE ATP-binding cassette sub-family A member 9; TrEMBL-Plants: tr|A0A0B2PMM8|A0A0B2PMM8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0053500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9590705..9595526) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTTTGGCACCCCACTTATGGGGCTTGGCACCCCACTTTATCAAATACGGAATTTAAAGTTCCGTATTCTCCATATTG AATACGGAACTTAAAATTCCGTACTGTATTTAAGTATGCGTGTCACATTTTCAACCATTCATTATATACTAAAATAGATA CGGAATTTTATTTTCCGTATTGATATGGAAATTTAAATTCCGTATCTGTTTTAGTGGGGTGCAAAGCCTAAGGGATGGGC TCCAAACCCAACTCCCGACGCAGACACTGAATGTCGACGGGCTTCTTTAGTGACCCACCTCGCAGAAAAAACTCGCTATG CATCAAATCGCGGGACCCACCTTTGATGCAATATTAGCATTCTCTTCACTTCACAGTTCACACACAACACTCTCTCTGGT TCTCGCATCGTGGTTGCGATCAACAATGGCGGAGAGCACTGACAGCAACGGCGTCTACGTCGACCACGAACAACAAGAAG ACCAACAAAAGCCGCCACCGCCGCCGCTGCAGCAGCGTCGGAGAAAGCATGGACTGGTGACAACGGAGACTTTACCCGAG GTCCTCAACCGTCTCGTCACCGACATCCTGTTCCCGGGACCAGCCGACGACGCCTCCCTGCTTCGCCGGATCAAGGCGTC CGTCGCCGGCAACGCTCCTCTCCTTCCGGAAGCTTCTAGAAACTCCGCCAGCCACGTCATCGTCTGGACTCGCCGCGGCA GCCCCCTCCGCGCGCTTCTCGTTATCTCCGTGAGGATCATTCAATTTGATTATGATTTCAGTTTTTTTTATTGATTGAAT CGGGTTTTCTAACTGTTTTAACAACCTTCTAGCGTTTATAGATCATGATATGATTTTAATTTCTTCACGCGTTTCTTTGA ATTAAATAATTTTGCTCCAAAATAGATGAACTTGTGAGTTATTCGTCTATTTAGTGTTTTTTTTTTAATAATTATAAGAT TTTCATTGTTTTTCCTTATTATGTTCTGTTTTGAAATTTTTGCTAAAGAAATCATTTCAATAGAGAACAAACTGAGAATA AAGGCAGCATTTTTATAATTACTAATGAAAAATATGACAACTGAAGTGAAATTAGAAAACAAATCAAACACTGGGATTGA CAAAAGAGGGTTTATGTGCATTTTCAGTTTTTCACCCACGAAGGTTAGCTCAAGCGGTAAGAGCTAGGAGACATAAGGGT TGAGTGAGATGAAGGGTGAAGGGTCCAGGGTTCCAACCCTGAGGAGGGACTAATTTACTAACATTACTAACAACTAACAT TTGCCTATAAAAAAAGAAGTGCATTTTCACATGTTGAGCTAAGTAGTCAAGAAAATTTATGAAAAGGGATGCATGCATTG TTAATAGCTTTGAAGTGACTAAGTAAAGACTGTATCTACCATTTAGTTTTAAGTGTATCAAAATTAACACTGATCTAAAA GTGGATACATGATACATCCTTGCTTATTTAAGAGAAAAACTCAAATTAGAGGAACATTAACTTGAAGGTTTGAATCACTA GATTTCATAGCATGCAAGATTGCTCAAGGGGAAACTATATGAAGGGGACACTTGATTATTAGTTTTTTAGTCATGTCCTT TTGAATTTTTGTAATCATATTTATAATGAATACAATTCATATATGCCTGCTCAGTGGATATATTAGGCAGCTCACTTTTC GGTCTTCTGTATAATATTCTTATCAAGGGAAAGGTGTATGATAAATTTATCTTTTGCTTTGAATGTGTAAGAAGTTCCCC CCTCTTACTGCTGCAGGTTGGGGCTGTTACTTTCGTTGCTCTGACAGGGCTGCTTGTGTTTATGCTTTTCTTTCTGGCGG CGACCATAAATGCCGTTGTTATATCGCTGCTGATGTCTTTGGCAGCAGCTGGAGGGTTCTTGGCTCTTTTCTTTGCTCTT GCTACAGCTATATATATCGGAGCATTATCAGTAGCCATATTTGTGATCTCCTTCACTGCATTTTGGACAATTGTGGCTGT TCTGATAACCGCAGGTAACAAGTTGTTTGGTCACCTAATAGTCCTTTTCTCCTTTACTGTACATATACCATGTTTTAGGT TTGTCGTTTGCTTACATTGTCATGAAAACTTAAATCAGTTGTGTAAAATCAATGGTTGGAGCATTGCTTTAGACGATTTG CTTCTACGTAGGATCTGTGACTTTATAAATTGCACCCTTTTGTTGCGATCAGGAAGACATTATATCATAGTAATCACTTT ACAAGTTTTGTTGTCCTTCGGTCCTTCCCCTGTATAGAAAAAAGGACATGTATCATGTATGTACTAGCAGTAAGATTCCC CCCCCCCTCCCTCTAGGTGGAGTCAGCTGTATGCATGATCAAATAAATGTTTACAACTTCACATTTAACTGCACTGGTAA TGGATTTTCTTTCAGCAAAAAGATCACCAACTGAACTTTGAATGAGTATGGATTTTATATGTCCACTATTTGAATGTTGC TTCACTCAGCCACTTAACAGTAAAAAAAAGAAGTTGCCATAGACCAGCGATGACTGGTGTGGTCGATGCCTTCCTTAAAA TATCAACAATCGTAGACTATTTATGTGAAGATGAAAGCCATTAGGGATATTTTGGGGCATCTCTAACTTAATTGCAACTA ATTTTGTTCTCTTCATTCTAAAACATAAGAGATTGTATTGATATTTCCTTAATGAATTTCTATAATATTTCTCTTTATAT CTTTTCGGGTTTTCTTTTCTGTGAGTTAACACTGTAATGTTCCTTGGACATGGAAATCAATCTGTGCCAGGCTGGATGGG ATTCTTTTACACTGTTTGGCTGATAACAAGAAAGAGTCTCGGGCTTGCTAAACACTCACTGAGCGTGACTAGCTCTGCGA TTTCAACCTACACTACTGCTCGGCATGCCCGCCACCAAATACACAAAGATTCAGATTAGGTGATAATGACAGGTATTTGC TTATGTACAAATCTTTAGTTACATTAGCATGCTTTGTAATGAGACAAGCTTTTGTTATGGGCAAGATGCCTGCCTTGCCT TGTTCCTTCACCTTCCACAGTTTGTTTTCGATGCCTATATTTTGTTTTGTATTTATGAACTGATAGATGTTTGATAACTG ATGAATAATACAGGTTATTGTCTGTTGTGTTTGAAGTTTGAGGTATGTATAAAATAGTGTTTTTCTTCCTTAGCCTGTTG TACAACATATAACAGTATGATTTTACACTTAATGTGTTACTGGTGTAATTTTGAAACGAGTTATATTTCTGCAGACTCTG TGAACAAAGATGCACATGGGACACTAGTATAGCTACACATATGATAGTGGGTTTAATAATGTCATATTATCATATATGAT TCCACCACTTGGATGTAATCAAAACTTGCTTTTGACAAAAACAGAAGTATCAATAAAACTTGGAACAATGGGAACCTTTC AGGGAATTTGGGTGAGCATTTGCAAACTAAATTTTAGATGATATTGATTTTGAATTGAAGTGAATATGAAGTCAAATGAT TTGTTTTTTTTTTTTTTTTTTGTTTAAAGTGATTTTGAACCAAAATATGAATCTTGAACAAAGTAGCAAGTATGAGTTGC TCTTGCTCTTAAGGTTCTAGGATAAACTTGTGTTGAGTCAAAAAGAAACAAAAGACTCACTAAAAGTTAGATACAAATAG TAAAGGCGTTACAACCTCAAAAAGCGATTCACTGGGTGGCCACATCATAAGGAAGACAGCTGATTTGAATTTCATGCGTT ATGTTTAGCCATGCTAAATGTGGCTATGTCATATGTGAACCACAGCTAAAAAGGAAGCTGGTAGACACAATTTTGTGAGA TTAACTTCATGATGATCTTTGTTTGAAATATTAGAAGGGAATCATAATCATTGTCATTATTCAGTCTATATTTGTTTTAT GGTTTACAACATTGCAAACTTTGGTTCACAACATCTCAAATGAAAAGTAGAGAAGGATCTCTATTTGGATTTGTGTTTGG TGAATCCAACTAGTGCATTGTCGTTTGGAGCTGAAATCAAGCAGAAGCTCCATCGTTGGAATGGAATAAATGTAGGATCA TATCGGAGAGAGTTTATACTCATATTAGCACTAAGTGCATTAACTATTAAATCATTGTTTGAAACCTTGATTTCATGCTA GATAGTAATATACACTTAACTTGTGTTGTGGCATTGACTTCATCGAACCATAATTTACAGTTTGTTTTGCAATAACCATG AGCTTCTTATGGAAACAACACAGACGAATTGATGGCGTTTGTTTTTTTTTTTCTCCGGTTAAAGGAACTTGGATTAATCA GCTTAAAGCATCACCTAATGGCAATCAATCTAGGGGATCTTTCTACCAAAATTAAACTTAGGGGATATCAAACACCAAAA AGCAAAAGATAATACTAGAATATTTTGTTTTTTTTAGCGCTTAATTGCTCTCGTAATTCTGACTCGGATGTGGTGAGAAT CAAATATATTGAAATTTCAGCTAGAGGTTCAAATAGTCATTTTCAACAACTCACCACCCATTGGGTAAAAGATCATACTA GAATCTATGGCATGCTTGCAATCAATTATTTAAAACTTCAAAACCGAGATTGCGTTTCTGTCTTGTTAGAACAACAACCA GTACAGAAGGAATAGAGAGACACACAATAGCAAACAATAGAAACACATGAGGTTTGTTCAAGCAGTTCGATAAAATGTGC CTACGTCTGTGACTACAGAACAGTTGTAGTTTTGTCTTATTGTTATGTTAAGATATAGGGTTACATTGTTACAAGCATTA TATAGAGATAATTATGTTCCAG
CDS sequence (LotjaGi6g1v0053500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCAAATCGCGGGACCCACCTTTGATGCAATATTAGCATTCTCTTCACTTCACAGTTCACACACAACACTCTCTCT GGTTCTCGCATCGTGGTTGCGATCAACAATGGCGGAGAGCACTGACAGCAACGGCGTCTACGTCGACCACGAACAACAAG AAGACCAACAAAAGCCGCCACCGCCGCCGCTGCAGCAGCGTCGGAGAAAGCATGGACTGGTGACAACGGAGACTTTACCC GAGGTCCTCAACCGTCTCGTCACCGACATCCTGTTCCCGGGACCAGCCGACGACGCCTCCCTGCTTCGCCGGATCAAGGC GTCCGTCGCCGGCAACGCTCCTCTCCTTCCGGAAGCTTCTAGAAACTCCGCCAGCCACGTCATCGTCTGGACTCGCCGCG GCAGCCCCCTCCGCGCGCTTCTCGTTATCTCCGTTGGGGCTGTTACTTTCGTTGCTCTGACAGGGCTGCTTGTGTTTATG CTTTTCTTTCTGGCGGCGACCATAAATGCCGTTGTTATATCGCTGCTGATGTCTTTGGCAGCAGCTGGAGGGTTCTTGGC TCTTTTCTTTGCTCTTGCTACAGCTATATATATCGGAGCATTATCAGTAGCCATATTTGTGATCTCCTTCACTGCATTTT GGACAATTGTGGCTGTTCTGATAACCGCAGGCTGGATGGGATTCTTTTACACTGTTTGGCTGATAACAAGAAAGAGTCTC GGGCTTGCTAAACACTCACTGAGCGTGACTAGCTCTGCGATTTCAACCTACACTACTGCTCGGCATGCCCGCCACCAAAT ACACAAAGATTCAGATTAG
Protein sequence (LotjaGi6g1v0053500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHQIAGPTFDAILAFSSLHSSHTTLSLVLASWLRSTMAESTDSNGVYVDHEQQEDQQKPPPPPLQQRRRKHGLVTTETLP EVLNRLVTDILFPGPADDASLLRRIKASVAGNAPLLPEASRNSASHVIVWTRRGSPLRALLVISVGAVTFVALTGLLVFM LFFLAATINAVVISLLMSLAAAGGFLALFFALATAIYIGALSVAIFVISFTAFWTIVAVLITAGWMGFFYTVWLITRKSL GLAKHSLSVTSSAISTYTTARHARHQIHKDSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 38 | 38 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| Phobius | 34 | 138 | 105 | - | – | |
| PANTHER | 35 | 266 | 232 | 3.7E-90 | – | |
| MobiDBLite | 48 | 70 | 23 | - | – | |
| CDD | 99 | 240 | 142 | 0.00885323 | – | |
| SUPERFAMILY | 118 | 261 | 144 | 1.06E-5 | ||
| TMHMM | 134 | 153 | 20 | - | – | |
| Phobius | 139 | 164 | 26 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 165 | 170 | 6 | - | – | |
| Phobius | 171 | 198 | 28 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 199 | 203 | 5 | - | – | |
| Phobius | 204 | 235 | 32 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 236 | 272 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0053500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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