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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0054800 |
| Transcript ID | LotjaGi6g1v0054800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Centromere protein V; TAIR: AT5G16940.1 carbon-sulfur lyase; Swiss-Prot: sp|Q7Z7K6|CENPV_HUMAN Centromere protein V; TrEMBL-Plants: tr|I3SET8|I3SET8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9849120..9850757) extracted from Lotus japonicus Gifu genome v1.2.
CATAAGTTTCTGCTCTACTTGTTGTCAGTAATGCTTCTCCTTCAATCTCTTGCACTTATATAGATATTCTTTCAATGTAT TTCGAAGTCTGAAGTTTAAATCAACAACTCTTTTTTCTATGGTACTTATTTCCTAGCATGAATCAGAAATTTTGGGGAAC TGATAGAGGTAAAGAGACAGCAAGGGATAGCAAGCTGAATATGCATGCAAAGTTTTTTTCCTTTTAAGTGGTGCCAATAT ATGGTGCAATAAAGATTAATTTTGGTAATCTAGTTGCTCACAAATAGATGGTGATACTGATGTGTGTGTGGTGTGGGTAG GAATTTAGAAAAAGGACAAGAAAGAAATGGGGGAGTGATGAGTTATTGTGGTTTATGAGGCAAGATTATTGCCCCATCAG TCATCACTTTGATTTGCAAAATGCAAAATCCTATTGTCTTTGAGCCCTCACCCTTTTCTTTTTCTTTGTGATCAAAATCT GTAACTTCTTAACTACCTATATACATCTTATACTCAATAGTAACCCCTTTCTATAGGTTCTGTATCTAAGAAATTTTGTG AAAATAATCTCATCAACACCCCCAAATTCACTCACATCGAGAGAGATAAATGAGAGATATGATTGATGATGTGATAAAAA AATAAGTGAGATAGAAAAGAAAAATCGATGGAAATGAGATTAAAGAAAAAGTGAGTGTGAATGTATCAAAACTCATGCCG AACCCATTTGTATACTTTTGTGTCTATCTCCAATATAGATGTGATTCCTGCTTCCTTTTTGTTGAGGTAGCAATTTGTTA CTTCATAGTAAGTGCATCGGGATGTGTTATTTTCCTATTTTCATACTTTCGAACGGTATATAAACAGACTCTAGGTTTAA TTTATGATACCAAGTTAAGCCTTCTTTAACTGAGTCTAGTTTTAGTGCATGATAAATTATTGTTGACAGGAACCTAAATT TCATTTATGATCATTGGTTGTTTAGAATTCAGAAAATGGATGCTGAGACTGAGACCGTGGTGCATAATGGAGGTTGCCAT TGCAAGAGTGTAAGGTGGAAAGTGCTTGCTCCTTCCAGTGTGGTGGCATGGGACTGCAATTGCTCAAACTGCTACATGAG AGCTAATAACCACTTCGTCGTTCCTGCTGAAAATTTTGAGCTTTTGGGAGATTCTGGCAAGTTTATCACAACTTACACGT TTGGCACTCACACTGCAAAGCACACATTCTGCAAAATCTGTGGGATAACTTCATTTTACTATCCGCGTTCGAACCCGGAT GGGGTTGCAGTTTCATTCAGGTGTGTTGACCCTGGAACGTTGACACACATTGAAATTAGGCACTTTGATGGGAAAAATTG GGAGAGCTCATATAATCAGACAGGCATCGCTTCATGGTCAAAGGTGCAGAAGTAACTTCCATGATTAACATCAGGACTAG AAAATAAAATGTGGCAGATGTTAAACTGTGGCCATGATAAACCTGACATAGTGCAACAAGAAAAAGTTCAGAGACAAATT ATCTATTTGATTGATGTACTCTTGTTTTAGAATGTTTGTGTTGTGCCAATGTGTCTTCAACAACCATGTCATAGGGATTG TCTTCATAAAACGTGGAGAGGTAGCTTCTCATTGATAT
CDS sequence (LotjaGi6g1v0054800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTGAGACTGAGACCGTGGTGCATAATGGAGGTTGCCATTGCAAGAGTGTAAGGTGGAAAGTGCTTGCTCCTTC CAGTGTGGTGGCATGGGACTGCAATTGCTCAAACTGCTACATGAGAGCTAATAACCACTTCGTCGTTCCTGCTGAAAATT TTGAGCTTTTGGGAGATTCTGGCAAGTTTATCACAACTTACACGTTTGGCACTCACACTGCAAAGCACACATTCTGCAAA ATCTGTGGGATAACTTCATTTTACTATCCGCGTTCGAACCCGGATGGGGTTGCAGTTTCATTCAGGTGTGTTGACCCTGG AACGTTGACACACATTGAAATTAGGCACTTTGATGGGAAAAATTGGGAGAGCTCATATAATCAGACAGGCATCGCTTCAT GGTCAAAGGTGCAGAAGTAA
Protein sequence (LotjaGi6g1v0054800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAETETVVHNGGCHCKSVRWKVLAPSSVVAWDCNCSNCYMRANNHFVVPAENFELLGDSGKFITTYTFGTHTAKHTFCK ICGITSFYYPRSNPDGVAVSFRCVDPGTLTHIEIRHFDGKNWESSYNQTGIASWSKVQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 4 | 120 | 117 | 2.09E-22 | ||
| PANTHER | 6 | 137 | 132 | 1.5E-65 | – | |
| PANTHER | 6 | 137 | 132 | 1.5E-65 | – | |
| Gene3D | 10 | 126 | 117 | 3.7E-26 | – | |
| ProSiteProfiles | 10 | 123 | 114 | 24.744 | – | |
| Pfam | 33 | 109 | 77 | 3.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbon-sulfur lyase activity | Catalysis of the elimination of hydrogen sulfide or substituted H2S. |
Expression pattern of LotjaGi6g1v0054800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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