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LotjaGi6g1v0056700.1

Overview

Field Value
Gene ID LotjaGi6g1v0056700
Transcript ID LotjaGi6g1v0056700.1
Lotus japonicus genome version Gifu v1.2
Description F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UZ00|A0A072UZ00_MEDTR F-box/LRR protein; Found in the gene: LotjaGi6g1v0056700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:10321830..10323235) extracted from Lotus japonicus Gifu genome v1.2.

CACGATGGCATGTTCTGAAGAAAGGCCTGCAAAGGAAGCCAAAGGTGAGAGCACAGAGGGGCCAAATTGGCTTGAACTTC CTAGAGAAGTCACTACCAATATTCTGCACAAGCTTGGTCCCTTTGAAATTTTGGACAGTGCAAGCCTTGTGTGTCCTCTA TGGTGGAAAATCTGCATGGACCCTCTCATGTGGCGCACCATTGACATGACCAACCCCCCTCTCTATCCACATGACAAATT GGTTCGGTTTTGTCGTCGTCCCATTAAACGAAGTTGCGGTCATTTAGAAGACATTAGTATTGATGATTTTTGCACCAATA AAATCCTCAAAGACATTGCTAATTGGTAATCTCATTATTTTTCTCTTTATTGGCTTAATTCCATGTTTTATAATACTAAT TTTCCATGCTTTTCTCTTAATTTTGGCTCAATTACATTTTTTTTATAAATAGTATGTAAAATTTGAGTGAGCACTTAACA TTTGTGACATATGTTTAGTGAATGTTTCATATTAATTTTGTTTTAGCATATGATTCTTTGTACTATCTGTTTGTTTTTTT TTTTCATGGTATTATAGCGGAAGTCACGTACGTCGGATGCGGCTTTTGAAATGCGAGGAAATGTCTGATAAAGGATTGAT TGCGGTTGTGAAGAAGCTTCCAATATTGGAGGAGTTTGAAATTTCATTTGGTGACGTATCTAAGTATACTTTGGAACTTA CGGGCAAATGTTGCTCACATTTGAAAGTGCTGAAATTTAACAAGAAGGAAGATAAAGAATACAAGTGTGACGATGAGGCA TTTGCTATTGCGAAGACCATGCCTGGGCTACGCCATCTCCAGCTTTTGGGAAATAGGCTCACTGATAAAGGCCTGCTTGC CATTCTTGACGGATGCCCTCGTCTTGAATCTCTTGATCTGCGTGTTTGTTCCAATGTTGATTTAAGCGGAAGTTTGAGGG AAAGGTGTTGTAAGCAGATTAGATATTTACGTTTCCCGGAAGACTTGAGTGATGAAGTTGGCATCTATGTTGAAGATGAA GATGAATATTGTGAGCTTTGTGGATATGACTGTGGATGTGGTGAAGGTGGTGGTTATGTGAACTGTGGCCGGCACAATGA TGAACTAATAGATACTCTTATCACTCTGAAGGACAGTAACGATCCTGATGACAAGGCATATGAAAAAACTCTTCTGGCTC AGTACTATGATTCATTTGAAATGGTTTAGTTAAGTAATCTTATGTTCTTTTTGGATATGTTGATCACTTGCTGGTAGTGT TCTATATGGAATTTTGTTTTTGGTTTTAAAAGAGACTTAATTGTGCTTTTAAATGACATGGTTCTTTTACTTTTTTAATG TCCAAGTATTCAGACTAGTTCTTAATATATTTTTGAGTGGTTCACA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0056700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATGTTCTGAAGAAAGGCCTGCAAAGGAAGCCAAAGGTGAGAGCACAGAGGGGCCAAATTGGCTTGAACTTCCTAG AGAAGTCACTACCAATATTCTGCACAAGCTTGGTCCCTTTGAAATTTTGGACAGTGCAAGCCTTGTGTGTCCTCTATGGT GGAAAATCTGCATGGACCCTCTCATGTGGCGCACCATTGACATGACCAACCCCCCTCTCTATCCACATGACAAATTGGTT CGGTTTTGTCGTCGTCCCATTAAACGAAGTTGCGGTCATTTAGAAGACATTAGTATTGATGATTTTTGCACCAATAAAAT CCTCAAAGACATTGCTAATTGCGGAAGTCACGTACGTCGGATGCGGCTTTTGAAATGCGAGGAAATGTCTGATAAAGGAT TGATTGCGGTTGTGAAGAAGCTTCCAATATTGGAGGAGTTTGAAATTTCATTTGGTGACGTATCTAAGTATACTTTGGAA CTTACGGGCAAATGTTGCTCACATTTGAAAGTGCTGAAATTTAACAAGAAGGAAGATAAAGAATACAAGTGTGACGATGA GGCATTTGCTATTGCGAAGACCATGCCTGGGCTACGCCATCTCCAGCTTTTGGGAAATAGGCTCACTGATAAAGGCCTGC TTGCCATTCTTGACGGATGCCCTCGTCTTGAATCTCTTGATCTGCGTGTTTGTTCCAATGTTGATTTAAGCGGAAGTTTG AGGGAAAGGTGTTGTAAGCAGATTAGATATTTACGTTTCCCGGAAGACTTGAGTGATGAAGTTGGCATCTATGTTGAAGA TGAAGATGAATATTGTGAGCTTTGTGGATATGACTGTGGATGTGGTGAAGGTGGTGGTTATGTGAACTGTGGCCGGCACA ATGATGAACTAATAGATACTCTTATCACTCTGAAGGACAGTAACGATCCTGATGACAAGGCATATGAAAAAACTCTTCTG GCTCAGTACTATGATTCATTTGAAATGGTTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0056700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MACSEERPAKEAKGESTEGPNWLELPREVTTNILHKLGPFEILDSASLVCPLWWKICMDPLMWRTIDMTNPPLYPHDKLV RFCRRPIKRSCGHLEDISIDDFCTNKILKDIANCGSHVRRMRLLKCEEMSDKGLIAVVKKLPILEEFEISFGDVSKYTLE LTGKCCSHLKVLKFNKKEDKEYKCDDEAFAIAKTMPGLRHLQLLGNRLTDKGLLAILDGCPRLESLDLRVCSNVDLSGSL RERCCKQIRYLRFPEDLSDEVGIYVEDEDEYCELCGYDCGCGEGGGYVNCGRHNDELIDTLITLKDSNDPDDKAYEKTLL AQYYDSFEMV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 - –
PANTHER
PTHR38926
8 250 243 2.4E-84 –
PANTHER
PTHR38926:SF2
8 250 243 2.4E-84 –
Gene3D
G3DSA:1.20.1280.50
15 67 53 1.7E-8 –
ProSiteProfiles
PS50181
19 66 48 9.577
IPR001810
Pfam
PF12937
22 67 46 3.1E-7
IPR001810
SUPERFAMILY
SSF52047
47 253 207 2.94E-16 –
Gene3D
G3DSA:3.80.10.10
77 256 180 4.2E-23
IPR032675

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0056700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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