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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0058000 |
| Transcript ID | LotjaGi6g1v0058000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UYK8|A0A072UYK8_MEDTR F-box/LRR protein; Found in the gene: LotjaGi6g1v0058000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10624310..10627591) extracted from Lotus japonicus Gifu genome v1.2.
ATATAATAGCTTGTGCAGCAATATTCACCAAGAATATTCTATAGCAATGAGCTTTTTCATGAATGTCACATCTATCTATC TATATCTATCTATCTATCTTTCTATTTATCTATATCTATCTATTTATATCTATCTATCTATCTATCTATCTATCTATACT ATATATAAAGGGAGAGTTTTTGCAGTCTTGAGGATAAACCAGTCATTCAACAATTCATTGCCCATCAAATTAATTTTTAA TATGGGTATTTTAGTAAAGAAGCACATTATTCTACAAAGATTGTTGATAAGGGTTGCAACGCTTCAGATCTGCACATCAT CTTTCTTCCACCGTTTACTCTTCTGAGTTTCTCATTTTGTAACGCTTCTTGATGCTTTTCTTTCTTCCACTGTTTTGCTC TTTTCCATTTCTTATTTGGCTTAGAAATCAAATGGATAAAAGGAACAATCTTCAAGAGAAATTTCGTTACCTCTTCTCCC CCCTTACCCTAGCAGCGCCGCTGCTCACATGGGAGAGAATTGAACTCGATGGTGGCTCTGCGGTCCGGGGCGGTAGCCCG TTCCTGACCTGAGGCAATAGCGATTTAAATTTTAAACCATAGAGGTTGCAGGGCTCGGCGATATGAACACGGAGGCTGGG GAGCTCTGATCTTCAATCCGGTAAGAACAATCTTCTCCTCCCTTCGTTGCTTTGGAATTTTTCATTGTGGGATTTCATTT CTGTCCATCCATTTTCTATTCATTGTGTTCTTCTCCCCCGTGCCCCTTTCTTTTATTGTATCTAATCTTTTTTGGTATGT AAATGTTTCAGGTCCACTTTGTTCATGCTTTCAGTAGTAGGTAAGGGTTTTGATCTTAACTTCATCGCAAGTTTCTTCCT TTAATTTTCCCAATTTACTCTTCCTTAACTTCATAAATTTGTTTATGGCTTAATTGCAACTTTGGTCCTCGACGTTTACC AATGTCACGATTTTGGTCTCCCACCTAATTTAATTACGTGGATGGTCCCTGATGTTGTAGGTCGTGTGTAACGTTAGTCC TACCGTTTATTTCTTAATAGAGGAGACTTACGTAGACGTCCAGTTAGAGAGAGAAATGAGGTATGAGGAGGGAGGGAATC ACGTGACCTTTATAAGCGACACAGAAGTTTCCAAAAAAGAAAACTAAACCTATATTCAAATTCAAAGCTCTGTCATACGC AAGAACACAGAACACTGCGTGAGAACAGTGGTTCAATCTCTCCCTTTGGCTCTGCCACCCTCTTGCTTCAACCTCTCCCT TTGCCACCATCGCCTCAACTTCATCTCTCTCCTTCGATTTCTGAAGGCGAGTTTCCTTTTCTCATCTTTGATTTCGAATC TGAAAATCTCTACGTTAGGGTTTTGTTCAGTCTGATTTTTTCTAATTTTAGTTTTCAATTGCAGAATATGGAATCTGAAG TTCAAAGTGGCAATGCTTAGCGGTTACCCTAGCTCCGAACGATTCAATCTAAAGTTGCCTCTTCAATCTGGTACTTCCAA TTTTTTTTTACACTGTTGGTTGATTACTTGATTTGATGCATGTTATGCTGAACCTTGATTCAAAGTGTTAATGTATGTAC CAAAAAAAACAAGTATTATTGTGTAGCATTATCATAGTCTCTTTTTCATAAATTGAAGATTTATCAGAAACTGTGTGACT ATTGTTATCATCTGGTGTTCATAAAACAATCAACGGCGGTTCTGTCTGTTAGCATATGATGGCATCGTGTTTGAGATCAG GGAAGAAAGCAAAGCGTGAGAGCGCAACGGGGCCTAATTGGCTTGAACTTCCAAAAGAGCTAACAACAATCATACTTCAA AAGCTTAATACCATAGAAATTGTGACAAGTGCAAGCCCAGTGTGCTCTTTGTGGTGGAACATTTGTAAGGATCCACTCAT GTGGTGCACTATTGACATGATCGAAGACTCCGACCATCCTAACCATAAATTGGAGAAGATTTGTCGCTATGCCATTGATC GAAGCTGCGGTCATCTGGAAGACATTAGTATTGGAAATTTTGCCACTAATGATCTTCTCAAATACATAGCTGATAGGTAT TATTGTTTTATTTTCCATTTGCTTGTGCATGTTGTGTTATATATATTATGTTTTTGTTTTTTTAGTCATTAGGCATGTTG GTGCATCCATTTGGTGTGAATATCTACTAATTCTATTTCATTTATGTATTTTTCTTTATTTTTTGAAATTTTGCAGCACA AACCACCTCTATCGCTTGCGACTTCGAGAATGCAGGGCTATTTCAGATAAAGGATTGATTGAAGTTGCTAACAAGTTTCC AGTGTTAGAAGAGCTTGACATTTCATATAGCAATCTAACTAAGGATTCTCTGAAAGCTATTTGCCGATGTTGCCCTCATT TGAAAGCATTAAAATTTAACTCAACCGGAAACCTCTATGATGAGGTTGCGTTTGCTATTGCAGGAACCATGCCTAAGCTA CGCCATCTACATGTTGCGCTAAACCGTTTCAGTAATGAAGGCTTGGATGCCATTCTTGATGGTTGTCCTCTTCTTGAATA TCTTGACCTGGGATTTTGTTTTAATAAAACCTGTGTGACTAAAAGTTTGAGGAAAAGGTGTCCTGATCTCATATCGAAGA GACCTGGCTTTCACTTTACTTCCAAGATAATGATTTCTTCCAAGAAGATTATTGGTTGGACTCTGGTAAATGAAGAAAAT ATTTCTCAATTTAATTATGTATAATTGGCAGAGATTATTGGATGGGAAATGATTATTTTGGTTTTAGGACTGTTCTTTTT GGAAATGTTGATCACACTGAGTACTATTTTGAAAGGCATGGTTCTGTTGAAGATACTCCAATATCAATAGGGATTATTTT GTGGGAAGACATGAGTTCAGAAATGGTGTTATTTTATCAATCAGGTTGTGTATGCTTTCGATTCTTCTAGCTTATATATT CCTGCAAACGAAATCTTGGTTGCCATTTTTATTTGGTGTGGTCATTTTGGAATTTTTAATTAGCGCTGAACTTTTTTATG GCGTTTTGCAATTCACTTTGACGATTATTCATGAAAAATTTTCAAGGATAGGGCGAGAAGACATAAAAATGTCAGTGTTC ATTTCTTTATCTCACTTTGATGGCAACTGTTTACAATGATTTTTGGTCTAGATAAGATAAACAAATGGAATAACAGGCAC TACAAAAATTCGCTATTGCGGTTTTATATGTATGTTACGTCGGTCATTTCAACTGCCACAATCTTCTAAAATAATATGAC CG
CDS sequence (LotjaGi6g1v0058000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCATCGTGTTTGAGATCAGGGAAGAAAGCAAAGCGTGAGAGCGCAACGGGGCCTAATTGGCTTGAACTTCCAAA AGAGCTAACAACAATCATACTTCAAAAGCTTAATACCATAGAAATTGTGACAAGTGCAAGCCCAGTGTGCTCTTTGTGGT GGAACATTTGTAAGGATCCACTCATGTGGTGCACTATTGACATGATCGAAGACTCCGACCATCCTAACCATAAATTGGAG AAGATTTGTCGCTATGCCATTGATCGAAGCTGCGGTCATCTGGAAGACATTAGTATTGGAAATTTTGCCACTAATGATCT TCTCAAATACATAGCTGATAGCACAAACCACCTCTATCGCTTGCGACTTCGAGAATGCAGGGCTATTTCAGATAAAGGAT TGATTGAAGTTGCTAACAAGTTTCCAGTGTTAGAAGAGCTTGACATTTCATATAGCAATCTAACTAAGGATTCTCTGAAA GCTATTTGCCGATGTTGCCCTCATTTGAAAGCATTAAAATTTAACTCAACCGGAAACCTCTATGATGAGGTTGCGTTTGC TATTGCAGGAACCATGCCTAAGCTACGCCATCTACATGTTGCGCTAAACCGTTTCAGTAATGAAGGCTTGGATGCCATTC TTGATGGTTGTCCTCTTCTTGAATATCTTGACCTGGGATTTTGTTTTAATAAAACCTGTGTGACTAAAAGTTTGAGGAAA AGGTGTCCTGATCTCATATCGAAGAGACCTGGCTTTCACTTTACTTCCAAGATAATGATTTCTTCCAAGAAGATTATTGG TTGGACTCTGGTAAATGAAGAAAATATTTCTCAATTTAATTATGTATAA
Protein sequence (LotjaGi6g1v0058000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMASCLRSGKKAKRESATGPNWLELPKELTTIILQKLNTIEIVTSASPVCSLWWNICKDPLMWCTIDMIEDSDHPNHKLE KICRYAIDRSCGHLEDISIGNFATNDLLKYIADSTNHLYRLRLRECRAISDKGLIEVANKFPVLEELDISYSNLTKDSLK AICRCCPHLKALKFNSTGNLYDEVAFAIAGTMPKLRHLHVALNRFSNEGLDAILDGCPLLEYLDLGFCFNKTCVTKSLRK RCPDLISKRPGFHFTSKIMISSKKIIGWTLVNEENISQFNYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 244 | 236 | 1.6E-84 | – | |
| PANTHER | 9 | 244 | 236 | 1.6E-84 | – | |
| SUPERFAMILY | 14 | 68 | 55 | 5.1E-9 | ||
| Gene3D | 15 | 264 | 250 | 2.0E-36 | ||
| ProSiteProfiles | 19 | 66 | 48 | 8.597 | ||
| SUPERFAMILY | 82 | 245 | 164 | 2.16E-22 | – | |
| SMART | 91 | 114 | 24 | 380.0 | ||
| SMART | 115 | 140 | 26 | 6.0 | ||
| SMART | 141 | 165 | 25 | 160.0 | ||
| Pfam | 144 | 163 | 20 | 0.49 | ||
| SMART | 192 | 216 | 25 | 110.0 | ||
| Pfam | 193 | 213 | 21 | 0.016 | ||
| SMART | 217 | 241 | 25 | 270.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0058000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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