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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0058100 |
| Transcript ID | LotjaGi6g1v0058100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A072UZ00|A0A072UZ00_MEDTR F-box/LRR protein; Found in the gene: LotjaGi6g1v0058100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10627726..10631808) extracted from Lotus japonicus Gifu genome v1.2.
GCTCTCTCTCTTCTACCGTCACCTTCGATCTCGATCTTTCTCAATTTCAGTTTCCACTAGGGTTTCAGAATCTCACCATC ATATCATCTTTGATCTCTCTTCTTCACTGCGTCCCGGTCTTCGATATCGCTTCTTCACCGCATTGTGGTCTTCGATCTTT CTTCTTCACCTTCATACGTGTATGGTTTTGTTCTTGTTATTTATTTTGATTCCAGCTTCGTTTGGATCTGGTTTTCTTAC ACTCCTTAAAGATTTTGATTCTAATTTCAGTGTCATTTTGATTTCCTCCAGATTCCACATCAAAACTTTTGTGGTGCGGC TCAAACCACGAAGGATGAGCTGAGTGAAGATCCATCAGATTCGCATAGATCCGTCAGATTCACTGAGTTAAGGTAATTTA AGTTTCTAGATCGAGCAGATTGTGTTTCTCTTTGAATGCATGAGTTTCTGGTGATATACAATATTTAAGGTGAATTTGTA ACTTGCTTTGCTTTCTTTTTAGGAATCTTCTTTATAATTAAGTAGTAATTCATCCTGAAAGTTTGCATTGCTTTCTCAAT TGATCTAAATCAGAAAATAACCAGGACTAGTGTCATACAAAACTAAAGATCTTTGTTCCAATTCAGTCATCATGATGATG GAAAGGGGACTGAATTTGGTTGAGGTGTTTTTTCACTGGGCTGAGAATTTTATACCAGGGGAACAATGTTTTCTATTGAA AAAATTGTGTCAAAATGGTAGATTAGTGGTGAGAAGCATGAAATTATTTTTATGAAGCTTGGTAGTTGGTAGTGTAAACT GTAAATTAAGTTGATTCTATAAGCAGTGTTAAAGGTAGTTCCATTTTTTCTAATATTCCTGAATGGAGACTGATGGGAGA TCTTATTATTTAAGGGTAGTTCCATACTTAAAATTTGATGAATGTATTGAGCACAGGTTTCATTTGAATTGACAACTGAG GTGGACTTTGTACTGATTGACTTAATTTGCATGTATATATTACCTGGTATCATGATAGAATATTGGGTGGACTATGATCA TCTATCAACTGTTGAGTCATTGTAAATATGACAAACTCCGTTCAATTTATGGTTTTTGTACATGTTTTGACTTATTTTCA TTTTCGGTGACAAATTAATTGATGTTGGAATGAATGGATTGTAATGTAGTATTTGAAATTTTTCAAAGAACCCACATGAT TTTTTTATCCAAATCTTTCTAAATTCCAATTAATGCTATTATAAGTATGTTACTATTTTCAAATTTAAATATAATCTTAC TTGATTTTGCAAAATATTTTCATTCTTAAATGTTGTTGCAAGTATGTATTAGTTTCCCGTCAACAAAGTATGAATTAGTT TTACATTCAAAACGAATCCTATTCAATTATAAGAGTTTTATTTGTTGGAAGATCTTAAATTTCGATACTTTTATGTTTTA ATTTGAAATATCTGTTATTATAATTATTTTATTTATTATCTTCAAATTCATATTATATATATATATATATATATATATAG AGGAGGGCTCAGTTTACACTCTTTTAAATCTTACACTCTTACACTAATTTTACACGTTGATCTAATTTTAATCTAATGGA TGTGATATGTTTTAATTAGTAGGCATGTGACTTGGCCCTTACCCTCCGTCATCACCCAACAACAACTTCTTGTGGGTGGC GCCGATGGTGTTGAGAAAATGGCAACCGAGGAGAAATCATGAACCTTCTTTTACCACTTCGTCTCAAAATTTGTCTACCA TGGCTGTTTATTTCCTATCTATATTGGCCATAAAGACATACTAAAATGTTCAAAATAAATCTCCATATCTGAACCTTAAT ATGTGTGCAGTCCAAAATTTCACAATCAAACAAATCCCACGCCGATCAAAGTATGTCCATTTCATATGAATTTAAAACAT TTCAATTTTATTAGGGAAAAAACATCCAAAATCATTCAATTTTTTTCTTCTGTAACAACAAGTCATTTCAGACATTTCAG AATTGGGCAAGGAGAATGAAAGCCTATCAAACCAACCAAACTTAAACCCCCTGAGTCCCAATGCAATCACAACCCCAAAT CTGCAAAATGGAAACCTCGTACATTGGAACCGATTTTAGTAATCAAGCGACGGTGGGTAGCAAGGAGCATGAGAAGGACG CTGTCTCCACCCACAACATCTTCGGCGCCGCTCACAGCAAGGCTCACGCAAGAGTCGTTGTTGGGTGATGAGGGTAAAGC CAAGTCACGTGGCTACTAATTTCACATCTGTTAGATTAAAATTAAATCAATGGTGTAAAATTAGTGTAAGAGTGTGAGAT TTAGAAGGGAGTAAGCTGAGTCCTCCTCATATATATATATATATATCGTACTTGTTTTTTCTGAATGGAATCTTACTTTT TTTTTGAAACTAGGAATCTTACTTGATTTTACATATCTTATTATTAGAATACTTCATTTTCAATATGTATTTTTTTTCAA TATGTCCTCGTAGGATAGCTCAAGTAGTAGGAGCTGTGGACATATGAGTTTGGTAGAAAGAGGTCCAGAAATCGATTTCT GGAGGGTGCAATTTATCTTTCGAATGTACCAAATAAGATATTTTAAATATCATTTTTATTATAATGATAATATTCCAAAA CTCAATTTCTTTAAAAGAAGCTGTGCATTGCAAAAAAGTATAGCAAATCTTTCAAAAATGTATAAAAAATTCGAGTTGTT TCTCCCATATCTCTATCTCTATGAGCAAATAAAGTATCAGTTTATAAATAAAAATAAATCGATTAATTTGATATTTATTG TACATTTGGTTTCTGTAAATTGAAGTTTATCAGAAACCGTGTGACTATTGTTTTCATCTGGTTTTCAATCTTAGAATATT GAGGTCTCACTGTTGGTTAGCATGATGGCGTCGTGTTTGAGTTCAGGGAAGAAAGCAAAGCGTGAGAGCACAATGGGGCC TAATTGGCTTGAACTTCCAAAAGAGCTAACTACAAACATACTTCAAAGGCTAGGTGTTGCTGAAATTGTGACAAGTGCAA GTCAAGTGTGCTCTTTGTGGTGGAACATTTGCAAGGATCCACTCATGTGGCGCACTATTGACATGAGCGAAGACTCCAAC CATCCAAACTATAAATTTGAGATGATTTGTCGCAATGCCATTGATCGAAGTTGCGGTCATCTAGAAGATATTAGTATTGG AAGATTTGCCACTAATGATCTTCTCAAATACATAGCTGATAGGTATTGTTTTATTTTCCATTTGCTTGTCCATGTTGTGT TTAACTATTATTCCTATTTCATTTATGTATTTTCTTTTTAAGCAAAGATTTTTTTGAAATTGTACAGAACAAACCGCCTA CGTTGCTTCCAGCTTCAAAAATGCATGGCTATTTCAGACAAAGGATTGATTGAAGTTGCTAAGAAGCTTTCACAGTTAGA GGAGTTTGACATTTCATATACCAACCTAACTAAGGATTCTCTGAAAGCTATTGGCCGATGTTGCCCTAATTTGAAAGCAT TAAAATTTAAGCCATACGGAGTTCTCTATGATGCGGATGCGGATGCGGATGCGTTTGCTATTGCAGAAACCATGCCTAAG CTACGCCATCTACAATTTGTTCAAAACCGTTTCAGCAATGAAGGCTTGGATGCCATTCTTGATGGTTGTCCTCTTCTTGA ATATCTTGACCTGGGATTTTGTCATAATAAAACTTATTTGACATCCAAGAAAATCATATCAATGAGACCTGGCTTTCACT TTACTTCCAGGATAATGATTACTGATGGGTGCATGATTATTGGTTTTACTGAGGTAAATGAAGAGAATATTTCTCAATTT ATCGATGTATAACTGGCAGAGATTATTGGATGGGAAATGATTATTTTGGTTGTAGGACATGTGTTCTTTTTGGAAATGTC TGTTTTGAACAGCATGGTTCTATTGAAGATACTCTAGTATTAATAGGGATTATTTTGTTGGAAGACATGAGATTAGAAAG GGTGTTATTTTGTTGCTCTCATTTTGGAATTTTTAATTAGGACGGAACTTTTTATGGCGTTTTGCAAATCACTTTGATGA TAA
CDS sequence (LotjaGi6g1v0058100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCCTAATTGGCTTGAACTTCCAAAAGAGCTAACTACAAACATACTTCAAAGGCTAGGTGTTGCTGAAATTGTGAC AAGTGCAAGTCAAGTGTGCTCTTTGTGGTGGAACATTTGCAAGGATCCACTCATGTGGCGCACTATTGACATGAGCGAAG ACTCCAACCATCCAAACTATAAATTTGAGATGATTTGTCGCAATGCCATTGATCGAAGTTGCGGTCATCTAGAAGATATT AGTATTGGAAGATTTGCCACTAATGATCTTCTCAAATACATAGCTGATAGAACAAACCGCCTACGTTGCTTCCAGCTTCA AAAATGCATGGCTATTTCAGACAAAGGATTGATTGAAGTTGCTAAGAAGCTTTCACAGTTAGAGGAGTTTGACATTTCAT ATACCAACCTAACTAAGGATTCTCTGAAAGCTATTGGCCGATGTTGCCCTAATTTGAAAGCATTAAAATTTAAGCCATAC GGAGTTCTCTATGATGCGGATGCGGATGCGGATGCGTTTGCTATTGCAGAAACCATGCCTAAGCTACGCCATCTACAATT TGTTCAAAACCGTTTCAGCAATGAAGGCTTGGATGCCATTCTTGATGGTTGTCCTCTTCTTGAATATCTTGACCTGGGAT TTTGTCATAATAAAACTTATTTGACATCCAAGAAAATCATATCAATGAGACCTGGCTTTCACTTTACTTCCAGGATAATG ATTACTGATGGGTGCATGATTATTGGTTTTACTGAGGTAAATGAAGAGAATATTTCTCAATTTATCGATGTATAA
Protein sequence (LotjaGi6g1v0058100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGPNWLELPKELTTNILQRLGVAEIVTSASQVCSLWWNICKDPLMWRTIDMSEDSNHPNYKFEMICRNAIDRSCGHLEDI SIGRFATNDLLKYIADRTNRLRCFQLQKCMAISDKGLIEVAKKLSQLEEFDISYTNLTKDSLKAIGRCCPNLKALKFKPY GVLYDADADADAFAIAETMPKLRHLQFVQNRFSNEGLDAILDGCPLLEYLDLGFCHNKTYLTSKKIISMRPGFHFTSRIM ITDGCMIIGFTEVNEENISQFIDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 50 | 50 | 1.2E-10 | – | |
| PANTHER | 2 | 218 | 217 | 1.3E-83 | – | |
| PANTHER | 2 | 218 | 217 | 1.3E-83 | – | |
| ProSiteProfiles | 2 | 49 | 48 | 10.213 | ||
| Pfam | 5 | 50 | 46 | 8.0E-8 | ||
| SUPERFAMILY | 32 | 219 | 188 | 1.59E-19 | – | |
| Gene3D | 66 | 230 | 165 | 1.7E-27 | ||
| Pfam | 180 | 200 | 21 | 0.91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0058100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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