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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0059900 |
| Transcript ID | LotjaGi6g1v0059900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G66470.1 ROOT HAIR DEFECTIVE6; Swiss-Prot: sp|Q9C707|BH083_ARATH Transcription factor bHLH83; TrEMBL-Plants: tr|A0A1J7GMU4|A0A1J7GMU4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0059900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10896235..10898035) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGAGAAGCCGATCAAAACATACTAATAAAACATAATTAACTTGAGTTGTTGACATCTACAAATAGGCCTCCCTCACT AGTTGTCATTCTCATTGTTGACCTGCCTGAACAAACCATAATTGTATTTTGCAATTAGTTTCCCTTCACCTCTCTAATGG CATTGGCCAAACACCAAATTACACATGATTCAATCAACATGGGAAGCAAGGTTCAAACTTGTGTTTTCAATGAGTACCAC CACAAATCTCTGCTTGAAGAGGAAGGTGGCTCACAGAATACCAATGGACTCAGCAATGATTCAGCTATAACCCATTCTTC TCCTTCTCTATGTGGTACTAGCAATGATGGGTATGTTTATCATAAGAGTACAAACTATCAGCTTGAAGAAGCAGAGTCTT TGATTGATTTCAAAGACAGTGGGAAAAGCAATCTTATGCAAGCTAGTGGATCTTTGCTTAGCTTTCAGAAAGAGCACTGT GTTTGGGAGAATGATTTGCAGCATCAAGGGTATAACCAATGGAACCAAATTCAGTTAGGAACACAAGAATCAGTCTTGAA AAAACGCCCTTCTATGGTATTGCTTCCTCAATTAAGCTAGTCCTTAGAACTTCTTGTTTTTTCCTGAAATTAGAATGGAA ATTGATGTCAATTTTGTTGTTTAAAGGGAGAGAACATGAAAGCTGTGAAGAAGCAATGCTCAACTGAGAGTATAGCACCA AAACCAAAGTCAAGCTCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGGTTTGCTTCAATCCGAAGTTAATTTATGTTAG ATTTGTACAAAGTTTTGATTGCAAACTAAGCAAGATTAGAATATTGGGACTTAATGTTCATAGAATGTTTGTCTCACAGA ATAGAAGGGAAAGGATAAGTGAGAGGTTGAAGATACTACAAGAACTTGTGCCTAATGGCTCCAAGGTGGGATTTCCTTTT TCGAAATAACTTTTAATTTATCTGAGAAAATTATCAAAGACTTTTGATTTAGATAGATGATTTAACTTTGATGGTGAATT TTGCAGGTTGATTTGGTTACCATGCTAGAGAAAGCAATTAGTTATGTAAAGTTTCTCCAATTGCAAGTGAAGGTGAGATT TAAAAGAATATCTTCTTCTCCTTCTTTGATGTACAGTTTTCTTACTTGCCTCAAACTAAACTAATGCTTTGAACTGAAAC TTGGCAATTAGCTTATGACATGTTTGTTCTCTCAAAATTGTTCATGGTGCAGGTGTTGGCAACTGATGAATTTTGGCCTG TCCAAGGTGGAAAAGCTCCTGATATTTCCCAAGTAAAAGAAGTCATTGATGCCATTCTTTCATCCCAAAGAGATAGAAGT TCAGGCTCAAACTAGATGATTTGAAGATCATGAATTTTCAGGGAAATAATATCACACAATATTTCAAGCACAACTTTGCG TACTTAGAAAAACCTTGCTCTGAAGAGTTGGTCATTCTGAAGGGCATTTTAGCAAAATTTATATTAGTGGCGATGCGAGT GTTCAAATTGAGTGAATAGTCAAATTGATCCATAAAAGTGTAGGGCGTTGGCCAATTCATCCCTAAAAGAAGAAAATACT CATACAATTTCTGATTGTGTAATATCCAGCACCGAACACAAGATCAATTTGACCATTCACTGGCTTTAGACTAGATCAAT AGTACCTTCCCTTTTCCTTAACGATTATGTATTGTATATTTGTTTATGTTGAGCACATTATTAATTAGCATGGAATAAAA AGATATCAATCACGCGAGATTCAAATACTATAAAATCATAC
CDS sequence (LotjaGi6g1v0059900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTGGCCAAACACCAAATTACACATGATTCAATCAACATGGGAAGCAAGGTTCAAACTTGTGTTTTCAATGAGTA CCACCACAAATCTCTGCTTGAAGAGGAAGGTGGCTCACAGAATACCAATGGACTCAGCAATGATTCAGCTATAACCCATT CTTCTCCTTCTCTATGTGGTACTAGCAATGATGGGTATGTTTATCATAAGAGTACAAACTATCAGCTTGAAGAAGCAGAG TCTTTGATTGATTTCAAAGACAGTGGGAAAAGCAATCTTATGCAAGCTAGTGGATCTTTGCTTAGCTTTCAGAAAGAGCA CTGTGTTTGGGAGAATGATTTGCAGCATCAAGGGTATAACCAATGGAACCAAATTCAGTTAGGAACACAAGAATCAGTCT TGAAAAAACGCCCTTCTATGGGAGAGAACATGAAAGCTGTGAAGAAGCAATGCTCAACTGAGAGTATAGCACCAAAACCA AAGTCAAGCTCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGGGAAAGGATAAGTGAGAGGTTGAAGATACT ACAAGAACTTGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTAGAGAAAGCAATTAGTTATGTAAAGTTTCTCC AATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGATATTTCCCAAGTAAAA GAAGTCATTGATGCCATTCTTTCATCCCAAAGAGATAGAAGTTCAGGCTCAAACTAG
Protein sequence (LotjaGi6g1v0059900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALAKHQITHDSINMGSKVQTCVFNEYHHKSLLEEEGGSQNTNGLSNDSAITHSSPSLCGTSNDGYVYHKSTNYQLEEAE SLIDFKDSGKSNLMQASGSLLSFQKEHCVWENDLQHQGYNQWNQIQLGTQESVLKKRPSMGENMKAVKKQCSTESIAPKP KSSSSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVK EVIDAILSSQRDRSSGSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 117 | 103 | 2.9E-90 | – | |
| PANTHER | 15 | 117 | 103 | 2.9E-90 | – | |
| PANTHER | 128 | 250 | 123 | 2.9E-90 | – | |
| PANTHER | 128 | 250 | 123 | 2.9E-90 | – | |
| MobiDBLite | 141 | 175 | 35 | - | – | |
| MobiDBLite | 146 | 170 | 25 | - | – | |
| Gene3D | 154 | 214 | 61 | 6.6E-11 | ||
| CDD | 162 | 218 | 57 | 1.10347E-11 | ||
| SUPERFAMILY | 162 | 223 | 62 | 4.97E-14 | ||
| ProSiteProfiles | 164 | 213 | 50 | 15.364 | ||
| SMART | 170 | 219 | 50 | 1.0E-11 | ||
| Pfam | 173 | 214 | 42 | 4.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0059900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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