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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0060000 |
| Transcript ID | LotjaGi6g1v0060000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT3G03440.1 ARM repeat superfamily protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|I1MZD4|I1MZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10944799..10950275) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATAAGTAACATCTAAGGGCTCATTGATTCTTAGATTTTTACCAAACTACCAACAACTACCCTTCCCCTCTCTCT ACACATCACACTCTCTTTCTCTCTCTACGTAACCCTTTCTTGTCCTATAACGGTTGCTTAACACCTCTCCTATAACCTCC ATTCTACCTTTCTTTCTTTCTTTCTCATTCTCAACCTCTTCAAATCTCACAGATAGTATTTTTCTCTCTAATGGATAGTC CTCATTCACCTTCTTCTTGTTCTTCCTCCACCTCCTCGACTTGCTCATGGGAGCCTCACGGCGGCGCCACCGACAGTCTT GAATTGGACGAGCCGCGAACGCCGTTGGCCATCCGGCGAGCCCTTCAGCTTCTTAACTCAGGTGAGCCGGAGCTGCGTGT CCAAGCCGCCCGTGACATCCGGCGGCTCACGAAAACCTCCCAGCGCTGTCGGCGCCAGCTCTCTGAAGCCGTCGGTCCAC TAGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTTCTTGCGTTGCTTAACCTTGCCGTCAAAGAT GAAAAGTAAACTACTAACCTCTCTTCCCAATTGCAATTTTCCAATTACCCCTTTTTTTCTAAAATATTTCTTGATTTAAT TTTTTTTTACCAATTTTTTTATTTTTTATTATTTGTCTGCAATTAATTTATTTGAAGTGCGTTTTTTTTTATTATTTGTC TGCAATTAATTTATTTGATGTGCGTTTTCGATTTTTGGGTTTTCGTGCGCTTTATTTTGGACACTCGAATCGAGGATTCA AGGTCATAGAGTTGTGGATTTCATATAAAAATTACTACTAAAAAATATAAAAATTACTACTAAAAAAAAATATAAAAATA ACTACTAAAAAGAAACGCAAATTTGAGTTTTATTTCATTATTATGTGGAGTGTCTTAAAATTCAGGTTAGAATTCTCGTC GACATATTTCTACATACTTTAAGGAGTGAACATGAAAATTATTTAATTCTTATTTGTAAAATAATTAAATATAAAGTAAT GAAATGTATTGAATTGAATGTTGAACGGTCGGTTCAAGTGGTATATGCTTGATTCAGCTTAAGCGAAGTTTCGGGTTTAA GTCTTATAGATGAGTTAGCCCCATCATAATTTGATGTTTGCGGCTCTAACGGGATTGCCTTGTAAGCAGGAAAAAAATTG AATGGTTTTAATCCATTACTTTGCCAAGATCCTTTATATATATATGTACCAGTAGTATGTGTGTCTAGTACTACAAGATT TTGTTCTCTGTTGGTCCCCTCATCTATGCAAAAGCATTTGCGTCTCATTGGTTGGTGGAAAGAAAAAAGGAATTTTGGGT CGGTTTCTTTTCTGGTGGGATGGTTAGATCTTCGTTTTCATAGTCTAGCTAGGTAGTTGTTGATTAGAATGGTTGAAAAT ATTTGGATATTGAAAGAAAAAATGAACCATTGGAATCTAATTAATGTAGGCATTTCCATGTTGTATTTTCTCTTTTATTT TTTAGCGGTGAGTGCTATGTCATCTTGTGACACTACTAGAATGTCAATTATGTATTTATGTTGCTTTGTGGATGATCATT GTTTCTGATAGCTTGAATGTATGTTGTATACTATGTCACCAGAAAGAATTGAATGCTTTAGTTTATTGTCTAAGCTTTAT CCAAATGGAAGGTGGATTCCCTTTGGTTCACATGGTGCACTTTCTTTTTTGCCTTTTGTTTCTTTTCCTTTTTCCCTCAT GTCTTCTTCCTCAAGTTATCTCATATCATTTATTATATTGGATCAACTTTCACCTCCTAGCAAATGAATAGTTGGAACTT GGAACTCTTTTAATTTTCTGTTTCTTCTATTTAGTAACAAAATATCTGCATAAACATAAAGCAGAGCTAGTTAAAACCGT GGATATCTATCTGTTTGCTTAGCTATGCCTTGAATTTGATATTCTAGGTGTGAATTATGTCATGGTTATCAAACATGGAA AATATTAAAAGAATTAGAAAAAGAAAGCTATTTAGCAGTCTTTAATGACTCTTAGGATGTAGAAATTGGATAATTCTTGT TGTTATTATCTTACTTGACTTTTCCTTTCAATTCCCTGCATTGAAGGTGGTGTTCAACCATTGCATATCTTTTTTCCTAC CCCTGTTCCCATTAAGGATATGCGTGTCTGATTGAGTGGAAAATGGGAACGTCCAAAAATAAGGACAGGAGTGAATGCAG AGTGGGGTAGGAAGTTTTGATTTTCACTCATGGTTGCTAGAGGGTGGAAAATCATTTTCATGCCATAGGAGTGGCCCAAA TTTGTAAGGTGGGGTATGAGACTATGAGTAGTACTCTACTTTCAAGTTTCAACCTCCCTACGTTTTGGTCATTCCAAGCA ATTGTGAAGTGATCTTCATTAAAAAATTTCTACCTTCCAATCTTCACCTATGCAAAACAAGTGTGGCCTAAAATTTTTTG TTATGGCTGAGTTTTAATACATGGCTATTGTCATTCTAGACGCTTTTGAAAAGTGAAGACTGTGCTTCTTTTAAGTTTAG GTATATCCCTTTCCTTGCTGTTAAACATTCACTAAGATGCCGTTTGGAAGAACTTATTTGAGCTTAACTTATAAGCATAA GCCGTTCGTACTTATGAAAATAGTTTATAGCCTTCCTATACGTTGTGTTGAACTTATTTTCATAAGCTGCTTGTATTAGC TTGTGAATAAACGCTTATACTCTGATCTATTCTAACCTTATTTCAGTAAACTTCTCATATTAGTTTATGAATAAACATTT ATGTGATAAACATGGCGTTTAATTAAGCTGTTTACCGAAACACGTTCTAAATCTTGTCTTTTTTATGCTCTTTATTTTGT TCTGTACGTTTGCACTATACCAGTATTAGCTAGTTAGTCTTCCTTTAATTAGTTTGCGGATCATATGCTTCAGAATCAGT GCTGATTAACTTTTTATTCTTGATAAATGTTGTAGTCAAGATTCAGTATATTCATTACTTGAACTGGTCTATCTTTTGCA GGAATAAAATCAACATTGTGGAGGCCGGTGCATTAGAACCGATAATCAGCTTCCTCAAGTCACAAGATCCAAATCTGCAG GAGTCTGCAACTGCATCTCTGCTCACACTATCTGCTTCTTCAACCAACAAACCAATTATTAGTGCTTGCGGCGCCATTCC TCTTCTTGCTGAGATCCTCCGAAACGGAAGCCTGCAAGCTAAAGCTGATGCAGTAATGGCTCTCGCTAATTTGTCAACAC ACCCTAATAATCTCAGCGTCATTCTCGAAACAAATCCAATCCCTTTCATAGTTGACCTCCTCAAAACCTGTAAAAAATCC TCAAAAACGGCTGAAAAATGCTGTGCTTTGATAGAAGCATTGGTTGATAATGACGAGTGCAGCAGAACTGCCCTCACATC TGAAGAAGGCGGGATTCTCGCGGTTGTGGAAGTTCTCGAAAGCGGCACTCTCCAAAGCCGGGAGCATGTTGTTGGAGCAC TATTGACAATGTGCCAGAATGATAGGTGTAAATACAGGGAACCAATTCTCAGAGAAGGTGTCATTCCAGGGCTTCTTGAG CTCACTGTTCAGGGAACTCCAAAGTCTCAGATAAAAGCGCGAACCCTTTTGCAGCTTCTCCGGGAGTCTCCTTATCCAAG ATCTGAAGTTCAACCTGACACTCTTGAGAACCTAGTGTGCAACATCATATCGCAGATTGACGGGGACGAACAATGTGGTA AAGCGAAGAAGATGCTGTCTGAGATGGTTCAAGTCAGCATGGAACAGAGTTTAAGGCATTTACAGCAGAGGGCTCTTGTG TGCACCCCAAGTGACTTGCCTATAGCTGGTTGTGCTTCTGAAGTTCCTTCAAAATGATAACCTTTTCCTTTTCTTCCCTC ACTTTTTTCTTTTCACTTTGAGCTTGTGAGATAAAATTTCCATAGCAAAAATGAAAAAAAGAAGGAATAATACATACTGT AGTATGCTAGTCCAGGCCGTTGTGGAGGTGTCGTGTGACTGGTAATTTGTCAATAAACTGAGTTGTGAGAGATAAAGAAC ATGGTTTTGCAGTTGTCTTGTAAAGAAACTGTTGTATAAAATGTCATACAAGTAGTAAAGACTCTTTGTCCAATTATTCT TGTCCTCCATTTTTGCTAACAAGAGTGAGCTTCAACAGAGTTGGACTGCCTTGTCCACTTGTAATTTGGTAATGCTAATT TTTTAACCCCTTAATCTCTACCCACTATGTCTTCAACCTCACTCACTTAATCGCCTCGCATATGTTACTCCTGTTTCTTT TCTACATCTTGTATCCTTTTAGAGTATCTTGTATTTTCAATATTCAGCTTTATGTGTTTATGCAATAATCAGTTGTAGCT GTTAGTTTCTGTTGAACAACTCATCATATTTTTCTTATTAGTTTGTGAGCATTAGATTGATATCAGTTGGTGATAGCTCT CACTATAACTGCTCATAACAGATTGTATAGAAATGAGATCTTGAATTCAATCATTCAAAGAAAACTTTTAGAATTCATTT AACAATATTCTATCTTCTCTTCCTTAGTCTTATTTTCAATTTGGTATTAAGAGCTAGTTTCGATTCCTATACCATCTTCC CCTAGTATTCCTTTTTCCTCTTGTGAAAACAGAATTCCTTCCAATGCTTAAGTTACTTTTTCTCACACCATAGGCATCAA GCTAGATGAGAAAAAATTTCTGCCATGGAAGCAACAAGTTGAAGGAGTCATCAGGTCTCACAAGCTTCAGAGGTTTGTTG CAAATCCTTCTATTCCCTGATCCCCTCACGTTCTTGTCAGAAGAAGATTGTGACAATGATTTAATTAATCCACCTTACTC AAATTGTGAACAGCAGGACTCAATGTTGTTCACCTGGCTTCTTTCTTCACTCTCAGATTCTCTTCTGCCTGCAATTATCA ATAGACAATCTCAACTTTTGGATGAGATCCACAGATTCTTTCAGGCACAATCTCAAGCTCAATTAACACAACTTTGATCT GAACTGAAAAAGAAAAAAGATTCGAAGATTACATCTGAATATCTGAAAAGGATTAAACTATTGAGGTGTGTCAATATGGT AGGATATAAATACAAGTATACAACACATTGCTACAACAAATGGCAAGCGATCGTCGTCTGAAGCATAAGTAAATTCGCCG TCATATTCAAGACAAAGTCCACAAGGATTGGGCCGGGAAGGCCTGGTAGATGGAGCAGCGGACTGAGGAAGATAGGCTGG AGGTGACTTGTGCCCATCATAGTGTAGTAGGATATGAGAAAGAATGAGTAAACAAAAGATGAATAGACTGGGAATACAGA CAACAGGAATATTAGCTGATGTTCAGGGACATGTTCCCTTGTTTTATTTCTGGGCCTGGCCCACTATGAAATGAAACCAG CCTACTTTGACAAAAAAAAAGATGAAAAGACTACATA
CDS sequence (LotjaGi6g1v0060000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGTCCTCATTCACCTTCTTCTTGTTCTTCCTCCACCTCCTCGACTTGCTCATGGGAGCCTCACGGCGGCGCCAC CGACAGTCTTGAATTGGACGAGCCGCGAACGCCGTTGGCCATCCGGCGAGCCCTTCAGCTTCTTAACTCAGGTGAGCCGG AGCTGCGTGTCCAAGCCGCCCGTGACATCCGGCGGCTCACGAAAACCTCCCAGCGCTGTCGGCGCCAGCTCTCTGAAGCC GTCGGTCCACTAGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTTCTTGCGTTGCTTAACCTTGC CGTCAAAGATGAAAAGAATAAAATCAACATTGTGGAGGCCGGTGCATTAGAACCGATAATCAGCTTCCTCAAGTCACAAG ATCCAAATCTGCAGGAGTCTGCAACTGCATCTCTGCTCACACTATCTGCTTCTTCAACCAACAAACCAATTATTAGTGCT TGCGGCGCCATTCCTCTTCTTGCTGAGATCCTCCGAAACGGAAGCCTGCAAGCTAAAGCTGATGCAGTAATGGCTCTCGC TAATTTGTCAACACACCCTAATAATCTCAGCGTCATTCTCGAAACAAATCCAATCCCTTTCATAGTTGACCTCCTCAAAA CCTGTAAAAAATCCTCAAAAACGGCTGAAAAATGCTGTGCTTTGATAGAAGCATTGGTTGATAATGACGAGTGCAGCAGA ACTGCCCTCACATCTGAAGAAGGCGGGATTCTCGCGGTTGTGGAAGTTCTCGAAAGCGGCACTCTCCAAAGCCGGGAGCA TGTTGTTGGAGCACTATTGACAATGTGCCAGAATGATAGGTGTAAATACAGGGAACCAATTCTCAGAGAAGGTGTCATTC CAGGGCTTCTTGAGCTCACTGTTCAGGGAACTCCAAAGTCTCAGATAAAAGCGCGAACCCTTTTGCAGCTTCTCCGGGAG TCTCCTTATCCAAGATCTGAAGTTCAACCTGACACTCTTGAGAACCTAGTGTGCAACATCATATCGCAGATTGACGGGGA CGAACAATGTGGTAAAGCGAAGAAGATGCTGTCTGAGATGGTTCAAGTCAGCATGGAACAGAGTTTAAGGCATTTACAGC AGAGGGCTCTTGTGTGCACCCCAAGTGACTTGCCTATAGCTGGTTGTGCTTCTGAAGTTCCTTCAAAATGA
Protein sequence (LotjaGi6g1v0060000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSPHSPSSCSSSTSSTCSWEPHGGATDSLELDEPRTPLAIRRALQLLNSGEPELRVQAARDIRRLTKTSQRCRRQLSEA VGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQDPNLQESATASLLTLSASSTNKPIISA CGAIPLLAEILRNGSLQAKADAVMALANLSTHPNNLSVILETNPIPFIVDLLKTCKKSSKTAEKCCALIEALVDNDECSR TALTSEEGGILAVVEVLESGTLQSREHVVGALLTMCQNDRCKYREPILREGVIPGLLELTVQGTPKSQIKARTLLQLLRE SPYPRSEVQPDTLENLVCNIISQIDGDEQCGKAKKMLSEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVPSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| SUPERFAMILY | 40 | 357 | 318 | 1.54E-41 | ||
| Gene3D | 40 | 243 | 204 | 5.8E-36 | ||
| PANTHER | 49 | 369 | 321 | 9.6E-149 | – | |
| PANTHER | 49 | 369 | 321 | 9.6E-149 | – | |
| SMART | 69 | 108 | 40 | 71.0 | ||
| SMART | 110 | 150 | 41 | 0.0059 | ||
| Pfam | 117 | 196 | 80 | 1.3E-6 | ||
| ProSiteProfiles | 121 | 163 | 43 | 9.257 | ||
| SMART | 151 | 191 | 41 | 0.1 | ||
| ProSiteProfiles | 162 | 204 | 43 | 9.012 | ||
| SMART | 192 | 234 | 43 | 130.0 | ||
| Gene3D | 244 | 380 | 137 | 2.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0060000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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