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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0060300 |
| Transcript ID | LotjaGi6g1v0060300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT2G23440.1 transmembrane protein; TrEMBL-Plants: tr|K7MPS5|K7MPS5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10984301..10985645) extracted from Lotus japonicus Gifu genome v1.2.
AAGAACCCAATATTGGGTACCAGCTAGTGGGTGTTTGGAACATAGTTGTATAAAAAATGCTAACCCTTCTCAGGAAATGA GGTTTTATCACTAAACTCTCAGAAACTGATACAAGATTAACCCATTTCTCAAACCTCAAATTGAAAGAGTCAGCACTAGG TCCCCTACATTTACAACAACCACATGCAATTTGCTATCAACAATACTCAAGCAATTGAACTAACTAAACCAAGTTTTCCT TACCTTCTGTATGATGCAATTCCCAAAATTACCAGTTACCTAATGCTGATGGATGATCTATGCTTTATCACACCAATCAT GCACTCAAAGTGAGACAAGATTAACATCAGCAACTTCTCTCTCCATATTCTCTCGCTCTCTGTCTCTCTCACTCTTCTCT CTATCTTATTTCAACACTTGACTCCAAAGGATTCAATCCCCTCCAAGTCCCTATTACTCAGAGAATGGCTTCTCCAACAC AGAAATGGAGCCTTCGAAAGCCTACAATAATGCTATTCATTTTATGCATTTCATTCTCATCTTCACTTGAAGAAGGCATC ACATCTTCTAACAAATTAGACCAACCAGTGGTTGTTGATCAGCCAGCAGACCCTGAAATCAAGTGTGGATCATGTCCTTG TGGAGACACCTGTGGTGACCCACCACCTCCTCCACCATCCCCTTCACCACCACCACCACCACTGCCATGCCCATCGCCAC CGCCACCACCGCCATCTCCCCCACCACCTCCACCACCTTCACCGCCGCCTCCGAAGTACCCCTCCTGCCCACAGAATTGC AACCCCTTGTCACCACCACCACCAAGAATCATATATGTGCCAGGGCAGCCCAAACCATCTTGGATATATTATTACTCTGC TGCTGAAAACAGAGGTGTGGGAATATTGCTGGTTCTAGCTCTGGGAGGACTCTCAGTGGCAATGGTACTTGGATGATATC ATGAAGCAAAAGCAACATTTCTAGAAATAATTAGTTTGCACTAAATGCTTGATTTTGTTCCTCATTCATGTTCACATTTT TTCTATTCAAACTCTATTGTGTTTTTATTTCCATGCAGTTATTATGCCTTTGCTCGTATAAACTTACTTGGAAATTTGTT CTGATTTGTGCAAGTAAATTTGTTCTGATTTGTGATACACAATAATTCAAAACCAAAGGTATGTCAGAATGCTACTCATA AGGAATAAACTTTCAATTAACTGCTCAAACAACCACTTCTAGCACGATAACCATTAGCATGAGTCTTCTTATCAGAATAA GCTTCCATTTAGAAGAATCTTGATCCCTTGTTTGCATAAGGAATAAAAAATTATATTAAGTGGTG
CDS sequence (LotjaGi6g1v0060300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCCAACACAGAAATGGAGCCTTCGAAAGCCTACAATAATGCTATTCATTTTATGCATTTCATTCTCATCTTC ACTTGAAGAAGGCATCACATCTTCTAACAAATTAGACCAACCAGTGGTTGTTGATCAGCCAGCAGACCCTGAAATCAAGT GTGGATCATGTCCTTGTGGAGACACCTGTGGTGACCCACCACCTCCTCCACCATCCCCTTCACCACCACCACCACCACTG CCATGCCCATCGCCACCGCCACCACCGCCATCTCCCCCACCACCTCCACCACCTTCACCGCCGCCTCCGAAGTACCCCTC CTGCCCACAGAATTGCAACCCCTTGTCACCACCACCACCAAGAATCATATATGTGCCAGGGCAGCCCAAACCATCTTGGA TATATTATTACTCTGCTGCTGAAAACAGAGGTGTGGGAATATTGCTGGTTCTAGCTCTGGGAGGACTCTCAGTGGCAATG GTACTTGGATGA
Protein sequence (LotjaGi6g1v0060300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPTQKWSLRKPTIMLFILCISFSSSLEEGITSSNKLDQPVVVDQPADPEIKCGSCPCGDTCGDPPPPPPSPSPPPPPL PCPSPPPPPPSPPPPPPPSPPPPKYPSCPQNCNPLSPPPPRIIYVPGQPKPSWIYYYSAAENRGVGILLVLALGGLSVAM VLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 161 | 161 | 6.3E-57 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 1 | 161 | 161 | 6.3E-57 | – | |
| Phobius | 14 | 22 | 9 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 143 | 116 | - | – | |
| MobiDBLite | 63 | 111 | 49 | - | – | |
| PRINTS | 66 | 78 | 13 | 1.0E-9 | – | |
| PRINTS | 81 | 102 | 22 | 1.0E-9 | – | |
| PRINTS | 103 | 119 | 17 | 1.0E-9 | – | |
| Phobius | 144 | 162 | 19 | - | – | |
| TMHMM | 145 | 162 | 18 | - | – | |
| Phobius | 163 | 163 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0060300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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