Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0065600 |
| Transcript ID | LotjaGi6g1v0065600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G58600.1 Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein (DUF828); Swiss-Prot: sp|Q9LUZ6|TBL44_ARATH Protein PMR5; TrEMBL-Plants: tr|K7MQ86|K7MQ86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0065600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:12378116..12382560) extracted from Lotus japonicus Gifu genome v1.2.
CTCCCTCCCCTCAAAAATCACATTTTTCTAGCATTTTCTTACCAAACCTCCACCCTTTATTTTATATAATTTTTAAACAG TCCAAATATCCTTCTTTCAATATTCTTTCCCCTTACCTCTTCCCTCCTCAACTCTCTTTCCCTGTGCCTTTTAGCTTTAC CCTTTTTCTCTGCAATGGCACCACTTCTTAGCTCTCAATCTTCCTCTGTTTCCCTACCATCACTCTCTGCTCTTCTTCTC CTAGTTTCTCTTCAATGCCATGTAGCCTCTTCAGCTCTGCTATACAGCTTGAAACACCACCACAACAGCATCCACCACCA GAGACCCATGATCCATGCCAACCAAACCAACTGTGCAATGTTTGTAGGAACTTGGGTTCATGATGACACTTACCCTCTTT ACCAATCCTCAAGCTGCCCCATCATAGATCCACAGTTCAACTGCAAAATGTTTGGGCGCCCAGATTCTGATTACCTCAAA TACCGATGGAGGCCCCTCAACTGTGAGCTCCCAAGGTACACTGAAACTTCAAACAAAAGAGCTCACAACATGTTTGTTAT TTTGTCTCAATGAAATTTTCTGCAGTTATTCTGTAGTATATGTATATGTATATTCTCTGAAATGGGTCTGTAGCGTGTTC TTGGTAGGTTCAATGGGGTTGAGTTTCTGATGCAAATGAAAGGCAAGACAATCATGTTTGTGGGTGACTCTCTGGGGAAG AACCAGTGGCAGTCATTGATTTGTATGATATATGCTACAGTGCCTCAGACACAAACGCAGATGGTGAGGGGGATGCCACT CTCCACCTTCAGATTCTTGGTGAGTTTGGACTCTTTCTGAACACTGCATTGCAATCATAATTACCCACTTGACATTTTGT AAAAAGTTTCAATTTTTGTTTTTGGTTTAAATTGAGATTTAGGCCTTGGCATGCTGTCAATTACTTTACCCCTATTATTT CTTTGGCAAAATATTACAATTTTGGATTCACAAGGAAAAGGAAAGTAAGCACACTAGCACAGTGCAGGTTTCCTCATTCA AAATCAGAGAGGGGTAGGTTCATGATATTTGTAATTGGATGGAAAAAGGTGTCTGTGATGGGGACCCAAAAGTACTGTTA GGTCATTATTGTACATTATTGAGCTAGTTGATGCAAACTGGAACTAAATCCTGTTCATGTTGTTCTCTGTGTATAAAGTA TACTTATCTAGCATATAAAGTCACATTTTACAGCTGGAAAATATGTCCTTACTTGGTTTTGATATGGTATGCGCAGGACT ATGGTGTGACCATTTCATTTTACAAAGCTCCCTTTTTGGTAGAGGTTGATGTGGCCCAAGGGAAGAAAATTCTGAGGCTG GAGGAGGTAGATGGGAATGGTGACCCATGGAGGAATGCTGATGTGCTGTCTTTTAACACTGGACATTGGTGGACTCATGT AGGAGCTCTTCAAGGGTAGGCAAATATCTCTTCCCTAAATTAAATTCCCTTTTGTTAGTTTATTCATCAAAATACTCCAA AATAAATTTCCCTTGTTGTTTAAATAGATTGATTTTGGAATATTAAGTGCAGGTGGGATTATGTTGAATTAGGAGGCAAA TACTACCAAGATATGGATCGTTTAACAGCTTTGGAAAGGGGTCTGAAAACATGGGCTAATTGGGTGGATACCAACATTGA CCAAAGCAAAACCAAGGTCTTCTTCCTGGGAATTTCTCCCTCACACACCAAGTAGGGACTCTGTTTCTCAGTATCTTTAT TGTCTTGTCCTGCTTTCTCTCTCTTACATTATTGTTCTCTAACATAGTGTGGGATGTCTAGGCTTCATAATTGTGTTTGT TTACATTGGACTAGCATATCCCAAATCTATAAATCTGCCTCTGTTAGATCTAGACCATAAGCCCTCTTCTTTTGACCCAC TGCAAGTGTAGTCTCGAGTTAGTCCTATCTCTATCATGCCTATTTTCATTCTTACATAGTTAACTTGTGCTGGTAATAAC ATGTATTACATGACTTATCATATTCATATTGCAAGCTATAGATTTCTACTGTGTTGCATCTTGTGCTCGATGCTTTACAT GAGATAAGAATACCTTTTTGTTGTTTGATCATAGTCATAGATTTTGTGATCAGTATTGTGCAACTTTACTTTGTATGTTA CATTTATAATTAAAAAATTAATAAAAGCCAGATATACCAGCTATCAAATTAGTGCAAAGGGGCCTTTTTGTCGCTTTCAT GACAACTCATGCTCACATAAAGTGCTGTTTTGGCAACTGGGCACGTTTCTTTCTCTTCCACAATCTGGAGAAGTTGTTTC TCCTCATGCAGGATCATGGTGATGCATCTCATGAATCTGTGAAATAAAAGCATGCATCATCATATTAAATTATTTACTAA ATACTTTGTACAAAAAGACTACAAGATATTTGCCGGTGGACATCTCGAGCCTCCCTTTTCATACAACAAATATATATTTA AATGAATTGTCACATGGTAGATGCCAGAAAATGGTTATTATAATATAAGGCGGCAAGGCCATTATTAGTCCAATGAAACA GTCTTGACCTGGAGCCCAATACAGCTGAGTTTTTAGTTTTGGGGCTTCACACAACTTTAACTTTCCAACCAATGTGACTA GCTGATAGGATGAACAGTGCTCATGAACAGTAGCAGCAGCTGTTAGAAAGTTATTATTTAATTATTTGTTGGGGTAGTTA TTATTAGTTATTTACATCAGTTTATGTTAGTTATGTTCTATCAAAACTGCCTAGGGGTGGTTATTAAATTTCTGGTTATA AATAGGAGTTGTGGCTGTTAGTTTAGACATTCAGAAATTGGGTGGTTGTCTTAGGGAGAGACTGAACTCTCAAAATTCCA GAATCCGTAGGAGAGAACTGGCTCTCGAACACCAGTACTGACATAATTATTCTGTAATAAATTCTGTTCTTATCACTAGC CCATTAAAACATAGATATGCAACCAACAAAAGTGGCATTAATATGTTGTACAAACTAAAAGGAAACAGTGATTTGCGTTT TACAAATGTGACATTTAGTTCAATATTTTATACAAGCTTCTTTAGTGGTTTGGATATCTGTGCATCTTCGGAAACCATTC TACAATAACTAAAAGAAAGTTATTATTTAATTATTTGTTGGGGTAGTTATTATTAGTTATTTACATCAGTTTATGTTAGT TATGTTCTATCAAAACTGCCTAGGGGTGGTTATTAAATTTCTGGTTATAAATAGGAGTTGTGGCTGTTAGTTTAGACATT CAGAAATTGGGTGGTTGTCTTAGGGAGAGACTGAACTCTCAAAATTCCAGAATCCGTAGGAGAGAACTGGCTCTCGAACA CCAGTACTGACATAATTATTCTGTAATAAATTCTGTTCTTATCACTAGCCCATTAAAACATAGATATGCAACCAACAAAA GTGGCATTAATATGTTGTACAAACTAAAAGGAAACAGTGATTTGCGTTTTACAAATGTGACATTTAGTTCAATATTTTAT ACAAGCTTCTTTAGTGGTTTGGATATCTGTGCATCTTCGGAAACCATTCTACAATTGCTTCTGAAGCAAGAAGCTTCTGT GGTTTTTATGTTTCCAAATTGATTCTGATATAAGAGAAGCTGATCCAAACATGCTAGTTTGTGTTGATACAAAATTCTTC ATTATAAATTATGGTAGTAAAGAACTCATGGCATTAATATGCATTGTACAGCCCAAATGAATGGAGTTCTGGAGTGACAA CAGTGACTTCAAAGAATTGCTATGGTGAAACTGCACCAATCAGTAGCAGTGGCACAGCGTACCCTGGTGTATTTCCAGAG CAGATGAAGGTTGTGGACATTGTGATTAGAGAAATGAGAAACCCTGCTTATCTTATGGACATCACAATGCTATCAGCACT TAGGAAAGACGCGCATCCCTCCGTTTATAGTGGTGATTTGAGTCCTGCACAAAGAGCTAACCCTGATTACTCTGATTGCA GCCATTGGTGCCTTCCTGGATTGCCCGATGCTTGGAACGAACTATTCTATACTGCATTATTCTACTAACTTTTCTGTTTA ACTAGCTAATTAACACAATTTCTTGTAACACACTCTCTCTTGTGGTTTTTAATTTTTATAACTCTTAGTAGGTAATCATT TATTCAGAGGGTTGCTTCATAACAACTGTTTCATATGTAAAGATGTGCTAATTTAAGGAGAAAAGAAGTTGCTTGATTCT ATTAATGTAAATAGTAAATTTCAGTATATATTTCTTAAAAAATAAAAAGTTAGGACTTAGGAGGAACGCTTTTGCTTTGG AAATTAATATTTTGGCTCTGCACTTTATAAAAACAAGGTTACACCAACACAGGTTTAACCTCAGAAAGTGCAGTTCCTTT GTACACAGTGTGGGATACATGTGTAAAATAGAAGGGGTAAATTTG
CDS sequence (LotjaGi6g1v0065600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCACTTCTTAGCTCTCAATCTTCCTCTGTTTCCCTACCATCACTCTCTGCTCTTCTTCTCCTAGTTTCTCTTCA ATGCCATGTAGCCTCTTCAGCTCTGCTATACAGCTTGAAACACCACCACAACAGCATCCACCACCAGAGACCCATGATCC ATGCCAACCAAACCAACTGTGCAATGTTTGTAGGAACTTGGGTTCATGATGACACTTACCCTCTTTACCAATCCTCAAGC TGCCCCATCATAGATCCACAGTTCAACTGCAAAATGTTTGGGCGCCCAGATTCTGATTACCTCAAATACCGATGGAGGCC CCTCAACTGTGAGCTCCCAAGGTTCAATGGGGTTGAGTTTCTGATGCAAATGAAAGGCAAGACAATCATGTTTGTGGGTG ACTCTCTGGGGAAGAACCAGTGGCAGTCATTGATTTGTATGATATATGCTACAGTGCCTCAGACACAAACGCAGATGGTG AGGGGGATGCCACTCTCCACCTTCAGATTCTTGGACTATGGTGTGACCATTTCATTTTACAAAGCTCCCTTTTTGGTAGA GGTTGATGTGGCCCAAGGGAAGAAAATTCTGAGGCTGGAGGAGGTAGATGGGAATGGTGACCCATGGAGGAATGCTGATG TGCTGTCTTTTAACACTGGACATTGGTGGACTCATGTAGGAGCTCTTCAAGGGTGGGATTATGTTGAATTAGGAGGCAAA TACTACCAAGATATGGATCGTTTAACAGCTTTGGAAAGGGGTCTGAAAACATGGGCTAATTGGGTGGATACCAACATTGA CCAAAGCAAAACCAAGGTCTTCTTCCTGGGAATTTCTCCCTCACACACCAACCCAAATGAATGGAGTTCTGGAGTGACAA CAGTGACTTCAAAGAATTGCTATGGTGAAACTGCACCAATCAGTAGCAGTGGCACAGCGTACCCTGGTGTATTTCCAGAG CAGATGAAGGTTGTGGACATTGTGATTAGAGAAATGAGAAACCCTGCTTATCTTATGGACATCACAATGCTATCAGCACT TAGGAAAGACGCGCATCCCTCCGTTTATAGTGGTGATTTGAGTCCTGCACAAAGAGCTAACCCTGATTACTCTGATTGCA GCCATTGGTGCCTTCCTGGATTGCCCGATGCTTGGAACGAACTATTCTATACTGCATTATTCTACTAA
Protein sequence (LotjaGi6g1v0065600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPLLSSQSSSVSLPSLSALLLLVSLQCHVASSALLYSLKHHHNSIHHQRPMIHANQTNCAMFVGTWVHDDTYPLYQSSS CPIIDPQFNCKMFGRPDSDYLKYRWRPLNCELPRFNGVEFLMQMKGKTIMFVGDSLGKNQWQSLICMIYATVPQTQTQMV RGMPLSTFRFLDYGVTISFYKAPFLVEVDVAQGKKILRLEEVDGNGDPWRNADVLSFNTGHWWTHVGALQGWDYVELGGK YYQDMDRLTALERGLKTWANWVDTNIDQSKTKVFFLGISPSHTNPNEWSSGVTTVTSKNCYGETAPISSSGTAYPGVFPE QMKVVDIVIREMRNPAYLMDITMLSALRKDAHPSVYSGDLSPAQRANPDYSDCSHWCLPGLPDAWNELFYTALFY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 33 | 33 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 33 | 33 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| Phobius | 17 | 28 | 12 | - | – | |
| PANTHER | 18 | 394 | 377 | 4.4E-228 | – | |
| PANTHER | 18 | 394 | 377 | 4.4E-228 | ||
| Phobius | 29 | 33 | 5 | - | – | |
| Phobius | 34 | 395 | 362 | - | – | |
| Pfam | 59 | 111 | 53 | 3.1E-21 | ||
| Pfam | 112 | 391 | 280 | 4.3E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0065600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…