Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0067400 |
| Transcript ID | LotjaGi6g1v0067400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB-POZ and MATH domain protein; TAIR: AT2G39760.2 BTB/POZ/MATH-domains containing protein; Swiss-Prot: sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3; TrEMBL-Plants: tr|I1LMJ1|I1LMJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0067400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:12792092..12794025) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGGGTTTTTTTCATTGCAAAAATGGGAGAATTGAAGGTGAAACCATGGGAAGTGTCATCGTCATCGTCGTCGCGTTG GATCAGCGAAACGGTGAATGGGTCTCACGAATTGACGATAAAGGGCTATTCTTTGGCCAAAGGAATGGGTCCTGGCAGGT ACATCACCAGTGACACGTTCAGCGTTGGTGGCTACGATTGGGCTATCTACTTCTACCCTGATGGGAAGAATCCTGAAGAC AATTCTGTGTATGTCTCAGTTTTCATAGCACTGGCTAGCGATGGTGTTGATGTTAGGGCTCTGTTCAAATTGACATTGAT GGATCAAACCAACAAGGGTAACCATAAGGTTCATAGCCACTTCGATCGACCCTTGGAGAGTGGCCCTTATAGTTTGAAGT ACAGAGGTAGCATGTGGTAATGATGAATTGCTCTGGGGTGGGGTTTGGGGGTTTGGGGATTTGGGGTTTAGGGTTTTCAA TTTTATTCTAATGCAATTGGATTGGATTGACTGTTTGGTATTTGTGTTTTAGGGGTTACAAGCGGTTTTTTCGGAGGTCG CTGTTGGAAAGTTCTGAGTATTTGAAGAATGATTGCCTTGTGATGCACTGCACTGTTGGTGTGGTGAAGACTCGTTTCGA GGGATCTAGACCTGGTGTTGTAGTGCCTACGTCGGCCATGGGTTTGGATTTTAAGGAATTGTTCGAGTCTGAGGTGGGCT GTGACATAGTTTTCAAGGTTAAGAGTGAAAGCTTCAAGGCTCATAAGGTTGTTCTCGCTGCCCGGTCGCCTGTGTTTAGG GCGCAGTTTTTTGGACCCGTTGGGGATCCTAAGCAAGAGGAAGCTGTGGTGGAGGATATAGAGCCCTTTATCTTCAAGGT AGTTAGTGATATTTGAATTGTGAAATAATTCAGCACTTTCTTACAGCATAAGGAATAGCATTCTTACTCGCATTTGTGAT GTATGTACACTGAAACTTCAATTAGAATGTTTATTAGTTATCTCTGGGTCTATATGCTTTTGTTTTTGAAGTGGTCAGTT GTATCTTACCACAGAAGTTGTTTGGAGTGGAATAAAACCGTTTAAGTTATTTCCATCAAAATAAACAGAAAAAAAAAGAT TCTAAGTTCCAGCCTTTCAGTGGAGAATGTTGTATGTTAAGAAAATGAAAAGTTCGCTTGAGTCTTTTGTTGAATTATTA GAGCTCTTTATGTCAATAATGATCTCATACTCTCATTCTATTCTAATACATGGTGTAGAATGTTGTATGTTCAAAAAACG GAGAAGTTCGCTTGAGTCTTTTGTTGAATACTGAGAGGTCTTTATGTCAATTATGATTTCATATTCTTATTCAATTCTAC TGTGGGTAGTTTTTGAAGTTTTTGTTCTTTCATACTTTCTTGTTTAGCAATTGATGGAATGAGTGGAAATTTTTTTATTT GTTTTATCCAGGCAATGCTTCTCTTCATTTACTCGGACAAACTTCCTGACATCTATGAGGTTATGGGCTCAGTACCCATG TGTTCATATGCTGTTATGATGCAGCATCTCGTGGCTGCTGCTGATCTCTATAATATTGATAGACTAAAGCTGTTATGTGA ATCGAAACTGTGTGACGAGATTACTATTGACAATGTGGCCACATCACTTGCCTTGGCCGAGCAACACCACTGTCCGCAGC TTAAGGCAATCTGTTTGAAATTTATTGCAAATCCATCAAACTTGGGAGGTGCGTATTGTTTTAGAATATGAATGTAAATT TTCTTGGGTGTTGAAGCTTAAGATTTAGATTCTCTTAATGGAATATTGCTTGTACTCTTAAAGTTTCCTTACGCTCTAAA TAAATTATATTTTCATGTTTCTTAGTTTTGTTAAGACTTAAGAGTATGTTTGTTTAATGTTCAAAAGAGTGCAAACTGAA AATCTCCATCCTGA
CDS sequence (LotjaGi6g1v0067400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAATTGAAGGTGAAACCATGGGAAGTGTCATCGTCATCGTCGTCGCGTTGGATCAGCGAAACGGTGAATGGGTC TCACGAATTGACGATAAAGGGCTATTCTTTGGCCAAAGGAATGGGTCCTGGCAGGTACATCACCAGTGACACGTTCAGCG TTGGTGGCTACGATTGGGCTATCTACTTCTACCCTGATGGGAAGAATCCTGAAGACAATTCTGTGTATGTCTCAGTTTTC ATAGCACTGGCTAGCGATGGTGTTGATGTTAGGGCTCTGTTCAAATTGACATTGATGGATCAAACCAACAAGGGTAACCA TAAGGTTCATAGCCACTTCGATCGACCCTTGGAGAGTGGCCCTTATAGTTTGAAGTACAGAGGTAGCATGTGGGGTTACA AGCGGTTTTTTCGGAGGTCGCTGTTGGAAAGTTCTGAGTATTTGAAGAATGATTGCCTTGTGATGCACTGCACTGTTGGT GTGGTGAAGACTCGTTTCGAGGGATCTAGACCTGGTGTTGTAGTGCCTACGTCGGCCATGGGTTTGGATTTTAAGGAATT GTTCGAGTCTGAGGTGGGCTGTGACATAGTTTTCAAGGTTAAGAGTGAAAGCTTCAAGGCTCATAAGGTTGTTCTCGCTG CCCGGTCGCCTGTGTTTAGGGCGCAGTTTTTTGGACCCGTTGGGGATCCTAAGCAAGAGGAAGCTGTGGTGGAGGATATA GAGCCCTTTATCTTCAAGGCAATGCTTCTCTTCATTTACTCGGACAAACTTCCTGACATCTATGAGGTTATGGGCTCAGT ACCCATGTGTTCATATGCTGTTATGATGCAGCATCTCGTGGCTGCTGCTGATCTCTATAATATTGATAGACTAAAGCTGT TATGTGAATCGAAACTGTGTGACGAGATTACTATTGACAATGTGGCCACATCACTTGCCTTGGCCGAGCAACACCACTGT CCGCAGCTTAAGGCAATCTGTTTGAAATTTATTGCAAATCCATCAAACTTGGGAGGTGCGTATTGTTTTAGAATATGA
Protein sequence (LotjaGi6g1v0067400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELKVKPWEVSSSSSSRWISETVNGSHELTIKGYSLAKGMGPGRYITSDTFSVGGYDWAIYFYPDGKNPEDNSVYVSVF IALASDGVDVRALFKLTLMDQTNKGNHKVHSHFDRPLESGPYSLKYRGSMWGYKRFFRRSLLESSEYLKNDCLVMHCTVG VVKTRFEGSRPGVVVPTSAMGLDFKELFESEVGCDIVFKVKSESFKAHKVVLAARSPVFRAQFFGPVGDPKQEEAVVEDI EPFIFKAMLLFIYSDKLPDIYEVMGSVPMCSYAVMMQHLVAAADLYNIDRLKLLCESKLCDEITIDNVATSLALAEQHHC PQLKAICLKFIANPSNLGGAYCFRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 339 | 328 | 9.8E-184 | – | |
| PANTHER | 12 | 339 | 328 | 9.8E-184 | – | |
| SUPERFAMILY | 22 | 161 | 140 | 2.78E-35 | ||
| Gene3D | 23 | 164 | 142 | 5.2E-33 | ||
| ProSiteProfiles | 25 | 159 | 135 | 22.36 | ||
| CDD | 26 | 159 | 134 | 3.50533E-28 | ||
| SMART | 30 | 142 | 113 | 2.3E-8 | ||
| Gene3D | 171 | 298 | 128 | 2.6E-37 | – | |
| SUPERFAMILY | 177 | 301 | 125 | 1.41E-26 | ||
| CDD | 180 | 300 | 121 | 1.34251E-53 | – | |
| Pfam | 184 | 301 | 118 | 3.3E-26 | ||
| ProSiteProfiles | 194 | 257 | 64 | 17.81 | ||
| SMART | 194 | 303 | 110 | 3.7E-19 | ||
| CDD | 300 | 336 | 37 | 6.60847E-15 | ||
| Gene3D | 302 | 338 | 37 | 5.5E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0067400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…