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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0069200 |
| Transcript ID | LotjaGi6g1v0069200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline transporter; TAIR: AT2G39890.1 proline transporter 1; Swiss-Prot: sp|P92961|PROT1_ARATH Proline transporter 1; TrEMBL-Plants: tr|A0A0L9U8Q0|A0A0L9U8Q0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0069200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13256294..13258882) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTCCGCTGGGTTGGACCGGCGGCGTAGTTGGTCTGCTTCTTGCTTGTGGAATATCACTCTATGCAAATGTTCTTGT TGCCAGGCTCCATGAATATGGAGGGAAAAGGCACATTAGATACAGAGATCTTGCTGGTTTCATATATGGTGAGGCCAATT ATATAAAGTGGACAAACAGGGTCTGTTTCTAACTACAAATTTCTATCAATGAGGTGGTACATGCTTGATTCGTCTCTTGT TTGAGTCTGTGTATGATAAAAAATTCACTAGGAGAACTACTCTCACCATAATGTTGATGTTGTCGGCTTGAAAGGATAAC CTCTGGTGGAGAATACATGTTACACAAATTAAACTACAATTTTCTTGCAACTCCCTTTTCATGCAAGTAATGAGTAAAAA GTTTACAAAAGTTATTAAAAAAATTCAAAAAAACAGTGACTATTTTGTAATTAAAATTGAAAAAGGAAAATAGATCCTAA TTTCACTTTTTCACCCTGTCATGTTATTTTGCTGCAGCTGCTGCTGATGTTCATTTCATTTTTTTATTGCAGGTAGGAAA GCATATTCTCTCACTTGGGCTCTGCAGTATATCAATCTTTTCATGATAAATACTGGCTTCATCATTTTGGCTGGTTCAGC CTTGAAAGTAAGAGAAAACTTAGAACCAAGTAAACCTTCAGAGAATTCAATTAAAATTGCATTTTCTCCTTGGTGACTTC TTCCTCATGTAGTCATGTGATGATACTTTTGCAATCATGTATAAATTATTATCTAGTAATTTTGTCTGTTTAAGAATCTT GACTAAACCATTTTCATGTTCACTGGGCTGTGCAGGCTACTTATGTTCTGTTTAGTGATGATGGGAAGATGACGCTTCCA TATTGTATCATCGTAGCTGGAGTGGTGTGTGCGATGTTTGCCATTTGTATTCCACATCTTTCAGCTCTTGGAGTTTGGTT GGGAGTTTCAACACTCTTCAGCTTAGCATATATTGTGATAGCATTTGTGCTATCGCTTAATGATGGTAATAGGTCATTGT TATGTCTTTCCATGCACATTGATCATATAATAACTTTTTCAGTAAGTTCCATCAGTTCCTTAAATCAATTGTCCTTATGA ATCCACTTCTTTATCTGGAAGAGTAATCAAACATGTCGATTTTTTAGTACATATTAATTTATTTAGATAGAGGAGAATAT ATTCTTATGTATATATCCATGTAGTAGTTCAAAATTATATTAATTTCTCAATTTAATCCTCATGTCCACCTAATATTTTT AAGTACAATAAAGGCTCCACAGTTGAGCAGTCCAAATGTCAGAGTAAAATATGATATTTTAAACAAAAATTCAACAATTT ACTTGTTAATTTATCATCAGAGTTAGGAGTTATGTGATGCAAACATAAGAAATTTTCTCGGAACCAGCAAAAGAATATAA ATTTCCCCCACTGCAGCTTATAAGCACTACATAAACATTTGACAACAATATTGAGAATCAGATGTTTCCTGATTTGAGAA CAATGATTCATCACTATGCTTACATTGTTACTGTTGAATATTATTTTGTTCAATTTGAGTTTTCTTTACATTTTTAATGT GACCGTGAACTAACCAGCAGAACATGATCAGGACTAAAATCACCACCTAGAGATTACAGCATTTCAGGAGATGGTGCAAC TAAAGTGTTCACAACAATTGGAGCATCTGCAAATCTCGTTTTCGCATACAACACTGGCATGCTTCCTGAGATACAGGTTA AATCATAATAGAGTTTTTTACATGGATACAGAATACTCTTCCACATCTCTCTGCTTTAGAAATTGAGTTTTATTTTGTTG TATAACTTACAGGCAACAATCAGGGAGCCAGTTCATAAGAACATGATGAAAGCTCTTTACTTTCAGTTTACTGTTGGGGT TCTACCATTGTACCTGGTTGTCTTCACAGGCTACTGGGCCTTTGGATCTTCTACATCAGCCTATTTGTTGAATAATGTGT CTGGTCCTGTCTGGGTGAAAGCTGTGGCCAATATCACAGCCTTTCTTCAAGCAGTCATTGCATTGCATGTAAGTACTTTT CCACGCGCAGGATTTGAACCTAATGACTTTTCCACGCGCAGGATTTGAACCCTGTCAACTCTTTGCCATTCTTAAATGGT TTAACAAAAATTGTTTCTCTGACCTAATGACCTTTGTTTCGCATCTATTAGATATTTGCAAGTCCAATGTATGAGTACCT GGATACTAAATTTGGGATCAAAGGAAGTGCAATGAAGGTTAAGAACTTGTCATTTCGAATCACGGTGAGAGGTGGCTACC TGGCCTTCAATACATTTGTGTCGGCTCTCCTTCCATTCCTTGGAGACTTCATGAGCCTCACAGGGGCGATCAGCACATTC CCCCTTACATTTATCCTTGCAAACCACATGTATCTAGAGGCAAAGAAGGACAAACTAACAAACTTCCAAAAGCTCTGGCA CTGGATCAACATTATTTTCTTTAGCCTCATGTCTGTTGCAGCAACAGTTTCAGCGTTGCGGCTGATTTCTGTAGACTCCA AAACATACCACATTTTTGCTGATTTGTGA
CDS sequence (LotjaGi6g1v0069200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCCGCTGGGTTGGACCGGCGGCGTAGTTGGTCTGCTTCTTGCTTGTGGAATATCACTCTATGCAAATGTTCTTGT TGCCAGGCTCCATGAATATGGAGGGAAAAGGCACATTAGATACAGAGATCTTGCTGGTTTCATATATGGTAGGAAAGCAT ATTCTCTCACTTGGGCTCTGCAGTATATCAATCTTTTCATGATAAATACTGGCTTCATCATTTTGGCTGGTTCAGCCTTG AAAGCTACTTATGTTCTGTTTAGTGATGATGGGAAGATGACGCTTCCATATTGTATCATCGTAGCTGGAGTGGTGTGTGC GATGTTTGCCATTTGTATTCCACATCTTTCAGCTCTTGGAGTTTGGTTGGGAGTTTCAACACTCTTCAGCTTAGCATATA TTGTGATAGCATTTGTGCTATCGCTTAATGATGGACTAAAATCACCACCTAGAGATTACAGCATTTCAGGAGATGGTGCA ACTAAAGTGTTCACAACAATTGGAGCATCTGCAAATCTCGTTTTCGCATACAACACTGGCATGCTTCCTGAGATACAGGC AACAATCAGGGAGCCAGTTCATAAGAACATGATGAAAGCTCTTTACTTTCAGTTTACTGTTGGGGTTCTACCATTGTACC TGGTTGTCTTCACAGGCTACTGGGCCTTTGGATCTTCTACATCAGCCTATTTGTTGAATAATGTGTCTGGTCCTGTCTGG GTGAAAGCTGTGGCCAATATCACAGCCTTTCTTCAAGCAGTCATTGCATTGCATATATTTGCAAGTCCAATGTATGAGTA CCTGGATACTAAATTTGGGATCAAAGGAAGTGCAATGAAGGTTAAGAACTTGTCATTTCGAATCACGGTGAGAGGTGGCT ACCTGGCCTTCAATACATTTGTGTCGGCTCTCCTTCCATTCCTTGGAGACTTCATGAGCCTCACAGGGGCGATCAGCACA TTCCCCCTTACATTTATCCTTGCAAACCACATGTATCTAGAGGCAAAGAAGGACAAACTAACAAACTTCCAAAAGCTCTG GCACTGGATCAACATTATTTTCTTTAGCCTCATGTCTGTTGCAGCAACAGTTTCAGCGTTGCGGCTGATTTCTGTAGACT CCAAAACATACCACATTTTTGCTGATTTGTGA
Protein sequence (LotjaGi6g1v0069200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPLGWTGGVVGLLLACGISLYANVLVARLHEYGGKRHIRYRDLAGFIYGRKAYSLTWALQYINLFMINTGFIILAGSAL KATYVLFSDDGKMTLPYCIIVAGVVCAMFAICIPHLSALGVWLGVSTLFSLAYIVIAFVLSLNDGLKSPPRDYSISGDGA TKVFTTIGASANLVFAYNTGMLPEIQATIREPVHKNMMKALYFQFTVGVLPLYLVVFTGYWAFGSSTSAYLLNNVSGPVW VKAVANITAFLQAVIALHIFASPMYEYLDTKFGIKGSAMKVKNLSFRITVRGGYLAFNTFVSALLPFLGDFMSLTGAIST FPLTFILANHMYLEAKKDKLTNFQKLWHWINIIFFSLMSVAATVSALRLISVDSKTYHIFADL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 367 | 367 | 4.6E-72 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 2 | 378 | 377 | 1.1E-188 | – | |
| PANTHER | 2 | 378 | 377 | 1.1E-188 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Phobius | 28 | 61 | 34 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 62 | 87 | 26 | - | – | |
| Phobius | 88 | 92 | 5 | - | – | |
| Phobius | 93 | 113 | 21 | - | – | |
| TMHMM | 95 | 113 | 19 | - | – | |
| Phobius | 114 | 119 | 6 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 120 | 140 | 21 | - | – | |
| Phobius | 141 | 159 | 19 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 160 | 180 | 21 | - | – | |
| Phobius | 181 | 200 | 20 | - | – | |
| Phobius | 201 | 223 | 23 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 224 | 242 | 19 | - | – | |
| TMHMM | 239 | 261 | 23 | - | – | |
| Phobius | 243 | 268 | 26 | - | – | |
| Phobius | 269 | 287 | 19 | - | – | |
| TMHMM | 288 | 307 | 20 | - | – | |
| Phobius | 288 | 308 | 21 | - | – | |
| Phobius | 309 | 313 | 5 | - | – | |
| TMHMM | 311 | 333 | 23 | - | – | |
| Phobius | 314 | 334 | 21 | - | – | |
| Phobius | 335 | 345 | 11 | - | – | |
| Phobius | 346 | 370 | 25 | - | – | |
| TMHMM | 346 | 368 | 23 | - | – | |
| Phobius | 371 | 383 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0069200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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