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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0070000 |
| Transcript ID | LotjaGi6g1v0070000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit; TAIR: AT5G58030.1 Transport protein particle (TRAPP) component; Swiss-Prot: sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5; TrEMBL-Plants: tr|I3S8A6|I3S8A6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0070000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13340160..13345349) extracted from Lotus japonicus Gifu genome v1.2.
CATAATGCAAAATAAAAAGTTGAAAGAAGTTCATGGACTCTCTTCCTCTGCCATTTATGGGCTTCATCAAAACCATGAAG CCATTTATAGGCCTTGTTTTCCATCATAACCCACCAAAAAAATAACAACATAAAAAGTTTCTGATCAAGCTTACCTCACC CAAATGAAAAAAGGTTTCTGACCGAGAGAGAGAGAGAGAGAAACACCAGGAGGTTGATTCACGAGTTTCTGAATCGCATA GGTAAGGACGCAACGCACAGTAGATTGTTCCAAATGCAGCATTGTCGTCGTTGAAGCTTAGGTCAGGTAAAACACTCTCA CCTTTCTGTTAACCCTAATTCCCCTCACATGGTAGTAGAACTGTTATACCATAGGTTTTATGGTCCTTTACCTCCGTTTG AGGTTAAAAATATCTTCTTTTTTGGCCGAATTTATGTTTTGATTTTATTCTAGAAAATGGGCATGTGTCGATTTTGATTT ATCTTAGGTTTTAGTGTCAGTGAACTACATTTCATGTGTTTGTTGTTATGCGTTTATATCCAGAAGCATGGTCTTGTTTT TATTTATTTTGAGTTTGAAGCGTGTTTGATGGTGGGTTATTAGTATGGGAAGTGTTTGATGGACCACCAAAATGCTTAGA CACCCATTGAGAGTTGAAGAGAATAGAGAATAGAGAGAAGTAATAGATGTGATATATGATGTGATAAGAAGTGAGAGATG TCGAGAAAATGAGGTGCTTGATGGGTGTTTGTATTGTTGGTGGGAGTGCTATATATCCGCCATGGCAGTTTCTCATGGCG GTTTTTTGGCTTTCCGTCATGGCCGAGAACCCACCCGTGTCTTCTCTCTCACTTTCTCAGTTTCACGATTCACTCTTGAG CACAACAACACACTGTTTCAGTGTTCACGAAATCCTTCCGTCCTTCGTCGCCGGCCGCCAAGCAAGAGAAGAGAATGATC GGCGTCGGAAAGATGAAGCAGTACAGTAACATCCTTGACAAGCCCCTCACCAAGGGCAAGCAAGAGGTTTTCAATTTCCC CCTTTTTGTTTTTTCCGTCAGATCTCATCTCGCTTTTCAATCTGAGCCTAATTTGATGATGATGATGATGCAGGTTAGTT TGAGTGCGTTCGCATTCTTGTTCTCTGAGCTTGTTCAGTACAATCAAACCCAGGTCGACAACATCGGCGAGCTCGAACGA AGGTCAATTGAATGATCAGTATTAATGGTGTTTTTTATTTGTTTTTCTGGATCCAGGATAGTGAAGAATAAGTCTAACAT TTTAATTATATGTGTTTTATTTTGCAACTTAGCAAGTTTTAAGAGAGAACAAAATTCCAGATTTTATGAATTCAAGATTT ATTTTTCTTGAATATATTATTATTATTATGTAGTTTGATACTTTACAATTAAATCCACCAGGTTGGAGGATGCTGGATAT GCTGTTGGGGCTCGAGTACTCGAGCTGCTTTGCCACAGAGAAAAGGTACGGCGAGTTTTGTAAATAATCCTTGTACAAGT TTTACTTTATATATCATAAGCTCATTGTTGGAACACACAGACAGATGAGAGGAGAGGGATTGCTATTTTATAGCAAAGTT AACAACTAATAAGACTAGCTTAGCAGTAGCACTAATAAGTAATAACAGAACTCAATTTTCAACTATCTAATTGTTTCAAT CACTTCTAACACTCATGACAAAGCTTAAGATTTGGGTGAAGACTCCTGAATGATTTTAATTATATTTTTAATATTATTAT TGGCCTCTACTATCAACACTCTCCCCACGGTTGACTGTAGTGAAAGTCTGTTGTTCCGGAGAACTCTCACAATCCGGGCG GCTTTGTCATTTGATCAATACTTAAGCTTGAACCTTAGCATTGTAGCATAGGTTCATAATGTCCTGTAGTTGAGTCTGTA ACTCCCATAGACAGATCTTCTGGTAAGGGCTAAGGCTGTGCTGTGCCTGAACTTGCATATTCTTTAATAGGCAAAAGTGA AAAACAGGATGTACTCTACTGTGTCGTGGAAGTTGCAAACTATAGGCAACTTCTCCTAGTCTCCTCAATTTTGTAAGGGC CATAAAGATGATGCACAAGCTTTCCATTTCTTTTTTCAAGTAAATCCAATCATCCACCTGCAACTCGATCTCCCTCCTTC TTGTCAGCCTGCACCTTCATCTGTTCTTGAGCTTTTTCCAAATTTTTCTTTAATCTACCAGGCATGTTGTCCCCTCCTGA GTCAACATATTGACCTCCTCAACTTTGGAATGAAAAGTATCTCGTTTAAAAATAGTAAGTGGACCTCTCCCATAAAGAGC TTGGAAGGGTGTCATATTGGCATAGCTATTATTATTGGTATTAAACCAAAACTCTACCCAAATCAACCAAAGAGATCAGT CTTATCAGTTCTTTTCTCTTTACCACCAATAGACTTCCAGACGCCCACCCTTTTGGCTTGTTAACATTCTCTTTCTAAAG TGAAAGAGTCCATACTCATCCATTATTCTGTCAAATACTACTTTGTCCACAACTAGACATCGTGGTAAAAATTGGCTTAT ATATTCATTTGGGCTATAAGTTGATCTTTTGTATATATTGGACTTGACAGTTAGTATTTAGTAATGAGTTTGACTTTAAA GTTTGAATATCTCTATATTTTTGCATGGAGTTGGCATGATTGATATAGCAATATTATTCTGAAATTACAGGGAAACAGAA GGGAGACACGGCTGTTGGGTATTCTTTCTTTTGTGCACAGTACAGTGTGGAAAGTATTATTCGGAAAGGTGAGCTCCTTT ATCAAAATTTGTTTTTCCCCACTTCCCCCCCCCCCCCCCTATTTTATCAATATTATATGAGAAGGTGAGTAAAATAAAAG AAGTGGAATATCCTTGCTTAGAGACATGAGCATTGATCCTTTCTTGTCCTTGACTCCCAGTATGGAATGCCTTTTTAGTC TGACAAAAAGTATCTAAGTTCTAGCGTCTATGTCCTTCAGAATATAAATGAACATTACAATCCTGAAAACAGTTTTATCT TAGCTATACAACATGCGGGATAGAATAAAATTATATGATGGGCTGTGTTTAATGCAAAGCTGTTTTGGGTTGTTCATTCT AAAGCTTGTATGTGTTTTTACGGTATTTTAACTAGTTTGATCCTTAGGTTCGCCATGATATGGTCCTTCAGACGAGAAGA ACTATTCAATACCTAGACATAGATATGTATTTATAAATTATAATCAATGGTGTAAGGGAGGTAACTTCAGCAAATCTTAC AACTAAGCACATAAAAATTGTGGGAAGTTTGCTAAGCAGAAACTATTGGCTATTTTATACTCTGTTCTGGTTCATATACT TATTCTAATATGTGCGTTGGCAACTAAGTTCATTCTAAAGCTTGTATGTGTTTTTACGGTATTTTAACTAGTTTGATCCT TAGGTTCGCCATGATATGGTCCTTCAGACGAGAAGAACTATTCAATACCTAGACATAGATATGTATTTATAAATTATAAT CAATGGTGTAAGGGAGGTAACTTCAGCAAATCTTACAACTAAGCACATAAAAATTGTGGGAAGTTTGCTAAGCAGAAACT ATTGGCTATTTTATACTCTGTTCTGGATCATATACTTATTCTAATATGTGCGTTGGCAACTAAGTTTTTTTAGCACCTCC TTGAGTTTCAATATTTTTTTGTCATTATATTAGGTAGCTGACTCGCTGGAGAAAGGAACTGAACATGAAGATGAATACAT GATCAGTGAAAAAGAGCTCCTAGTAAACAAGTAAAATTTCAGTCTCAATATTATATTTGAACTGCTACACATACCAGATT TTTGTCCATCTATTAGTTGTGAGCTTATGAATTTCTGGTTTATAGATTCATTTCTATCCCAAAAGACATGGGGACGTTTA ACTGCGGAGCATTTGTTGCTGGAATAGTACGGGTAAGTGCTTTGCTTCACGCAGTTACCTTCTAGTTATGTGATTCTTAT TAGAGAAGGTGCAATTGAGTGCTTTTTGTTTTCCATTCATCAATGAAGGGTGTCTTGGATAGTGCCGGATTTCCAGCTGT TGTAACAGCTCATTTTGTGCCCATGGAAGGTCAGCAACGGCCTCGGATGACGATTTTGATAAAATTCGCTGAGGAGGTAA ATAGTCATTGATTTTGCTTTTGCTCTTTGCACCCCCACACACCCATTCTTATCTGAGTTTCTTATATGGCTTTCTATTTT CTAGGTGTTACGTAGAGAAGCAAGATTAGGCTGATGTTTATAACAAGAATTTTCAAGATATTTATGATGCTGTGTACACC AATATAGAATGATGTGGAACTTTCATACTTTGCATGTGAAATGCAACGTAGGATTTTCGACGGCCTTTCTCTAAACTCTT GTTTTTCATTCCAATTTATCTCATGCTTTGTAGTCAAGAATTTATCCTTACTGTCTAAATTATGATGTACAAAAGGAAAA AGTCTGGTGTTTGTTAATTAATTTCAATTCTTCCCTCATCCCGTGTATTGATTGACAATCATATAGATGAAGTAATGCTT GATTTGCCCATTGCGTGCACTAAAAATGTGTTCTTCACACTAAGAAACTTGGATGGCATGCTTTCATTTTTCCTCCTAAT TATTATGTCAAAAAGTAATGGATTTGTCCAAAATTTTGAAGCATAGAAGCTCATCATGAACTACAGAGAAGAATACATAG GACTCTCCAGTGCACCCTTTGCACTGTCTATTTTGTTTTAAGAACTTTCTATTTTGTGTCTGTTGAGGTATAGAAAATCT AATATTTTTTATAAATGTTTTAGTTTATTATTATATTTTGGTTTAGTTTATCATTATATATCATTATTCAATGTTTTATT ATTGATTATTATACAGAAAAATTACGTCTTACATTATATGGTGATACCTAGAATGCTAACATGAATGTTTGTTAGCCAAC GTATCATTTAACAATATCAGGTGTGGTAATTTAAGATATTAAAGGGGGTAAAAACGGGGAAATAATTTTACAAGGACAAA AAATTAAATAATACGAAGGGACTAAAAATAAGATTATCTTACAACACACATTTTTAACCATATTTAAGACTCTTTACAAC ACATTAAAATGTTAAGTTATGCTCGTAAATAATAGCTAATGTCCTATCATTGGCAATTAAACAAAAATTA
CDS sequence (LotjaGi6g1v0070000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGGCGTCGGAAAGATGAAGCAGTACAGTAACATCCTTGACAAGCCCCTCACCAAGGGCAAGCAAGAGGTTAGTTT GAGTGCGTTCGCATTCTTGTTCTCTGAGCTTGTTCAGTACAATCAAACCCAGGTCGACAACATCGGCGAGCTCGAACGAA GGTTGGAGGATGCTGGATATGCTGTTGGGGCTCGAGTACTCGAGCTGCTTTGCCACAGAGAAAAGGGAAACAGAAGGGAG ACACGGCTGTTGGGTATTCTTTCTTTTGTGCACAGTACAGTGTGGAAAGTATTATTCGGAAAGGTAGCTGACTCGCTGGA GAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAAGAGCTCCTAGTAAACAAATTCATTTCTATCCCAAAAG ACATGGGGACGTTTAACTGCGGAGCATTTGTTGCTGGAATAGTACGGGGTGTCTTGGATAGTGCCGGATTTCCAGCTGTT GTAACAGCTCATTTTGTGCCCATGGAAGGTCAGCAACGGCCTCGGATGACGATTTTGATAAAATTCGCTGAGGAGGTGTT ACGTAGAGAAGCAAGATTAGGCTGA
Protein sequence (LotjaGi6g1v0070000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGVGKMKQYSNILDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGYAVGARVLELLCHREKGNRRE TRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAV VTAHFVPMEGQQRPRMTILIKFAEEVLRREARLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 2 | 194 | 193 | 8.3E-78 | ||
| PANTHER | 3 | 193 | 191 | 4.0E-97 | ||
| Gene3D | 23 | 194 | 172 | 8.1E-71 | – | |
| SUPERFAMILY | 23 | 192 | 170 | 4.45E-53 | ||
| CDD | 25 | 182 | 158 | 5.13323E-97 | ||
| Pfam | 30 | 182 | 153 | 9.6E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TRAPP complex | A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active. | ||
| Biological process | Golgi vesicle transport | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. |
Expression pattern of LotjaGi6g1v0070000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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