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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0071100 |
| Transcript ID | LotjaGi6g1v0071100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit F; TAIR: AT2G39990.1 eukaryotic translation initiation factor 2; Swiss-Prot: sp|O04202|EIF3F_ARATH Eukaryotic translation initiation factor 3 subunit F; TrEMBL-Plants: tr|I3SNM9|I3SNM9_LOTJA Eukaryotic translation initiation factor 3 subunit F; Found in the gene: LotjaGi6g1v0071100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13530961..13534958) extracted from Lotus japonicus Gifu genome v1.2.
GCCCATTCGAGCCCAGTTACAAACCGAAACAGAGACTAAACAACTGAAACCCTAGAAAATCGATCACAGTTCTTCCTCAA GTTCCATCCTTCTCTCCACACGTCGTGTTTGGTGCAGTGCTGAATCGGAGCTCCAAACATGGCGGCAAGCGATCGCACAG TGTTGCAATTCTCTTCATCTTCTTCCTCCTCTCAGAGCTTGTCCGCTAGGGTTCACCCTCTCGTTATCTTCAACATCTGT GACTGCTTCGTTCGACGCCCTGACCAAGCTGAGCGCGTCATCGGAACCCTACTTGGTTCCATCCTCCCCGATGGAACCGT CGATATCCGCAATTCCTACGCCGTTCCTCACAACGAGTCTATTGACCAGGTCCTTCACTCTACTCCTTCTTCATCATTAT TGTTGTTAGCAGTAGAAATTTGTTAGCCGCTAGTTTTATGTGTTGGCTGCATTGTATGTTGGTGATTTTGGTGAAGTTTT GTGTTGATTGATGGAAAGAGGTTGATTGGATGGAATACTCAAACTCTGTTTCATCTTAACATGATAATGCAATGTCTGGA ATCTGAATAATGTTATGGCAATTTTATTCCATCTCATTTCATTCTAATCCATCACATATCTTTCCACTTTCAATGCTGAT ATTGTAAATTACTTGTAGTCTGGCTCATAGTTATCGATAGGGCGCGAAATCCTGCTACTCGCAGCCAATAGCGGCCTTTC CTTGTATGGGATTTCATTTTTGGTGGTCATCCGCGACAGGCCGCGATCCTCGGTTGACTACTATGGTCTGGCTATAGTTA TCATGGTCAAAGTTTCATAAACAACCCAAACTGTGCTATTTTGTTTTCTACTTGTCTCACATTTGTCTAGAAGCTCAATT TCACATTGTGAATCCAGAACTGGATTGAAGCTAAATAAGCTGGCATAACTGAAAAGAAAGTTTGCTTCAGCCTCTTACTG GCAAATCTTCTGATTAAAATTTGTTTGAATCCTAGAACTACCTCTCCTGTACTTCGTCTCTAATAAGTTTAACTCTATGT TCTGTTATGGCCTTCCTCCACCTTTTGAGGTGTTATGTTTTTCTCCTTGGGAATGAAATTAATAACTTTAGGAAGCAATA AGGCTGATAGATCATAGAACTACATAAATTTCTTCAAAAAAGTAACAAAGTTTGTGTTTAAAAATTAGTTTTAAATGATA AGGTGTATAATACAGTACTCTGCATAGTTAAAATTATTATTTAAAGCCTAGAAAAGAAGTTATGTAGTTGAAAATTTCTT TTGTCTGTTTTATTGATTTTTTTTTGTTCTGCCTTTTGAGTGCATAAATCATAATACATCAGTAAATTTTATTATCTGTT CTCACACTCGAAACGAGTTCTAATTTTTGAACTTATTATTTTCAGGTAGCTTTGGATATAGAGTACCAACATAATATGCT AGTAGCCCACCAGAAAGTGAATCCAAAGGAAGTCATAGTTGGATGGTAATTCCAGTTTATTTTCTAATTTCTATACTTTT TCGAAGTTATCACCTGAGTGCTATATAACAGAATTTTCTGTGAAGTGTGTGCCAGGAAAACTATGAAATCCACATGGCCT TAGGTTAAATGTGTTAACTTTGGTTTCTAGAAGTTCCCTTTCTTGATTATTTATTGTATTTATGTGGAGAGGAATGCCAT ATTTTCTCAGTTTTTGTTTTACCTACAAACATGGAAGGTTTTGTTGTATCAGAGTGGATTAAAGCAAATGTTTTCTTTTG TGAGCTTAACTAATAAATATGCATATGGACTGGATAGCAGTGTTAGGCTGAATTGTATCTTCTTTGGTTTTCCCCGACGT CTTTGGTCTTAGAAGGATGACTGATCCCAGGTTTATATCTTCTTTTCTTTACTAAAAACCAATGCTAACCTCTAAAAATA ATGCAGGTATTCAACTGGCCTTGGAGTAACCGGTCATAGTGTATTAATCCATGAATTTTTTTCTCGAGAAGTTACCAATC CCATACATTTGACTGTTGACACTGAATTTGCTAATGGAGTGGGTACCATAAAAGCATATGTGTCAAACAATTTATCCCTT GGAGACAGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTTGAAGCTGAGCGAATTGGATGTAA GTATTGATTGGCATCATCTTTTTAATCATCCTTTTTCCTTTTACCTCATTCTTTTCTCTTGGTTAAGCTTTAGTTTTGTT TCTCATGTAACATATTTGCTGAAGTTTATATGCTTACCGTCATGACTCATGGATGCATCCAAAAAGAGTATTATTCTGAG TTTCCTTTTACTCAGTCAGTAACTGGCATTTCTCTGAATTGTACTTAAAGAAAATTTTATGGGGTATTTTGATGTTTCTT TAGCTTTCAATTATGGAATGTAATTGTCCATTGAATCATGCTAGGAGGACTAATCCAGAGTCTCTTGTGCTTTGTCTTTG TTTTGAGTTCTCACTGAAGTAATTTTTATGGAAATACCGACATAGAATAAGGAAATATGTAAGCTCTGTTAGAATTTTTT TTGATAAGCAAGCTCTGTTCGAATTTAAGTTGTTGACTTTTGAGAGAATGTATTAAGAGGTAGGAAGGTAGTTCTATGGG CTTATTGAGAGTTGGGAGCAATATTTATGTGAAAAATGTACTCCCTCCGTTTCAAAATTAATTGTCCACTTCCAAGAGAG CAATGAATGATGTTTTCCTCTATAATAGTTGTAGTTTAGCTGTTTAATTGTTTATATTTTATAGCACAAAAGAAATCTCA TTGGCTTTCTTATTATAATTTTATGTGGTATTAATTAATTAATTAATTCATTGTTTATTAATATCACTTTCATTTATAGC TTGCAATGTTCTTTATTTTGAATTTGAATAATGGAGGCTGATTACATGTTTATTCTGATAATGGCAGTTGACACCCTGAA GGCAACCACAGTTGAAAAAATTCCCTCTGATTTAGAAGGCATGGAAGCATCAATGGAGCATCTACTAGCCTTGATTGATG ACATATACAAATATGTTGACGATGTTGTGGTATGATGATCAACTTAGCCTTTTTTATCCAATCACATTTTAGGAGATTGT ACTAATTGATTTTTATTTCAGGAAGGGCGTATTGCACCTGACAACAACATTGGAAAATTTATATCAGATGCTGTAGGCTC CCTTCCCAAATCGCCCCCAGCTGTTTTTGACAAGCTTGTGAATGACAGCTTGCAGGTAAGATCATGTTTTGTGTTGGTAT TTAATTACAGCTATAATTGCAATGTTAGATTTTGTATGTCTGACAAAATAACCAAAATAACATTAAATGTTAGTTTCTTA GTTTATTGGTTTATGAACTTCTCAGCTTGCCTTTCATAACTTTGTTGGGCTGACAAGTGTTTCACCCGTTTCAGGATCAC TTGCTCTCTCTATATTTATCTAGCATCACAAGAACACAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAAATTCT GTGATTCTTCTTCTGTCTGTGAGCAGAGGCAATTTTTTCTGATGGAAGTTTCCTTTCTCGTCATGTTTTCTAGAAATGTG GAATATCAGCATTTTATACTTTTGCTTTACTTAACGTTTCATATTTTGTACTTGGCATTGCATAGGGAGTTTTGTTCTAT CTTCTCTAAGATATCAGAGTAGCGTTAACTTGTCATGTATTCTGTTATTATATTTGAAAGAACATGAGCAAAATCTTTTC CTCATTCACCTATTTATTTCAGTGCTTGAATCCATGTTAATGAGCTTGTGCTTAGATAAGCTTTATAAATATTGAAGTTT AATTTTCTACTTTTGAGAAAAGCATGTTTTTTATTGTGAACATAAACAAATTAGTCACATATTTTGTTGTCTTAGCAATA TATTACATTACTTAGGAAGTCTTAACGGTTGGATATAGCTTAAAGGCCATATCTAACTAGAAAGTTTCTCTTTTAATT
CDS sequence (LotjaGi6g1v0071100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAAGCGATCGCACAGTGTTGCAATTCTCTTCATCTTCTTCCTCCTCTCAGAGCTTGTCCGCTAGGGTTCACCC TCTCGTTATCTTCAACATCTGTGACTGCTTCGTTCGACGCCCTGACCAAGCTGAGCGCGTCATCGGAACCCTACTTGGTT CCATCCTCCCCGATGGAACCGTCGATATCCGCAATTCCTACGCCGTTCCTCACAACGAGTCTATTGACCAGGTAGCTTTG GATATAGAGTACCAACATAATATGCTAGTAGCCCACCAGAAAGTGAATCCAAAGGAAGTCATAGTTGGATGGTATTCAAC TGGCCTTGGAGTAACCGGTCATAGTGTATTAATCCATGAATTTTTTTCTCGAGAAGTTACCAATCCCATACATTTGACTG TTGACACTGAATTTGCTAATGGAGTGGGTACCATAAAAGCATATGTGTCAAACAATTTATCCCTTGGAGACAGGCAAATT GCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTTGAAGCTGAGCGAATTGGATTTGACACCCTGAAGGCAAC CACAGTTGAAAAAATTCCCTCTGATTTAGAAGGCATGGAAGCATCAATGGAGCATCTACTAGCCTTGATTGATGACATAT ACAAATATGTTGACGATGTTGTGGAAGGGCGTATTGCACCTGACAACAACATTGGAAAATTTATATCAGATGCTGTAGGC TCCCTTCCCAAATCGCCCCCAGCTGTTTTTGACAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTCTCTCTATATTT ATCTAGCATCACAAGAACACAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAAATTCTGTGA
Protein sequence (LotjaGi6g1v0071100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASDRTVLQFSSSSSSSQSLSARVHPLVIFNICDCFVRRPDQAERVIGTLLGSILPDGTVDIRNSYAVPHNESIDQVAL DIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHEFFSREVTNPIHLTVDTEFANGVGTIKAYVSNNLSLGDRQI AAQFQEIPLDLRMVEAERIGFDTLKATTVEKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRIAPDNNIGKFISDAVG SLPKSPPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAEKLNTAAQIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 288 | 285 | 2.8E-151 | – | |
| PANTHER | 4 | 288 | 285 | 2.8E-151 | – | |
| Gene3D | 18 | 191 | 174 | 3.5E-48 | – | |
| Pfam | 21 | 124 | 104 | 2.2E-21 | ||
| Hamap | 21 | 284 | 264 | 35.814 | ||
| SMART | 22 | 153 | 132 | 1.6E-28 | ||
| ProSiteProfiles | 23 | 154 | 132 | 29.71 | ||
| CDD | 24 | 281 | 258 | 1.77221E-128 | ||
| Pfam | 175 | 281 | 107 | 1.1E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. | ||
| Molecular function | Translation initiation factor binding | Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation. |
Expression pattern of LotjaGi6g1v0071100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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