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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0074400 |
| Transcript ID | LotjaGi6g1v0074400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA replication complex GINS protein PSF3; TAIR: AT1G19080.1 GINS complex protein; Swiss-Prot: sp|Q0UPV4|PSF3_PHANO DNA replication complex GINS protein PSF3; TrEMBL-Plants: tr|G7JB86|G7JB86_MEDTR DNA replication complex GINS protein; Found in the gene: LotjaGi6g1v0074400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14128804..14136359) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAACTACTATGATATTGATGACATTATGGTAGAGGAAGAGGTGGGCTTCAGACTCTCTTCTTTCGCTTCTAGTTG ATATATTTCAAATTCAATAAGGGGTGGTAGTTTAAGGGTGGATTATTTTTGTAAGTCTGGGAAAATGTTAAAGATACTCG ATGATGTTTCGGGGTATTGCTAGTGTATAACTGACTCTGTTCATTATCTCAACATTAAGGATATAGAGAGTGCAACCTGA TTTTCTTTTCCTAATACAGTGTATTGTTATGTTCTGGTAACAGATTGTGTCGGTGGTATTTCAGAAGCCAGCATCTGGAG TGGGAATAGATCCAAGTTCTGAGACCGACTCTGTAAGTGCCCTTGACACTGATTTATGTTAGGAACCCACTCACACACAC CACAAATGAATGAGAAAATGCAGGAAAGTGATTGTTTATTGATTGTGGAAAGAAATTACAGAGAAGGAATGTGTTCCCAA ATACTCTGCCCAGAGCAATGCTCCTATAGGAAGCTAATGCTTCCTATCCATACTAACAGCTAGCAATTCTCTGGATACCC ACTCTACCTCTCTTACTCTCCTTATATACTGGAGATATTACAATCACTCAATCTCTCTCTATTCTGTTAGACGGTTAGCC ACTATTCCCTTTCTTGCCCCTCCTAGAATATACCCTCCATACTTTAGGGCCCACATCCTCATGATGAGCCAATCTCTCTT GTGGCCTTGATACCTGACCCTCGTTCCTAACAATACCGGCTCCTTGAGCTGCAACCTTGTCCTCAAGGTTGAAATCCGGA AACTGACTTTGAATGGTAAGAGAGTCTTCCCAAGTAGCATCTTCAACGGTTTTCCCTTCCCACTGAATGAGTAACTGCGA AATGTTGTCTCCTTGAACCTCGACGGTTCTAGTAGCTAACACCTTAATAGGTTGTACAACCTCTGGTACTTCTCCTTCCA ACTCAGCTGGCAACTCCGAGGCCACCTCATAGTTTCCAATGGCTTTTTTAAGCACAGAAACATGAAAGACTGGGTGAACC CGTGAATGCTCTGGCAGCTTCAAACGGTAAGCCACGGCACCCACGCGAGCGACTATAGGATAGGGACCATAATACCGCGC TGCCAATTTGGCAAACACGCGAGTGACCACAGACTGTTGTCGGTGAGCTCGAAGCTTGACGAAGACCCATTCACCAATCT CAAAGGACTTATCGACACGCTTGGCATTAGCTTGAGTCCTCATTCTATCCTGAGCGCGTAGCAATTGGTCACGCAACTGG CGCAAAGCTTCATCTCGCTCCAACAATTCACGTTGCACCGCTTCGACCCGCGTTTCTCCTAAGCCCCAACGAGTGATTAC CGGAGGCTTGCGGCCATAGACCACCTCGAAAGGGGTCTGATTTGCAGCGGAATGGTAAGTAGTGTTGAACCAATATTCAG CCCAATGAAGCCAGCTCACCCACGTTTTAGGCTGGTCCGCCGAAAAACAACGAAGGTATGTTTCAAGACAGCGATTGACC ACCTCCGATTGGCCATCGGATTCGGGGTGGTAAGCTGAACTCATCTTGAGTTGGGTTCCTTGGAGCCGGAAGATCTCTTT CCAGAAGTGGCTCACGAATATAGGGTCGCAGTCGCTCACTATAGAAGATGGTATGCCATGTAGCCTGATAATTTCCTTGG TGAATAATTCTGCTATGCTTCGTGCAGAGTAAGGGTGTTTCAGAGGTAGGAAGTGGCAATATTTAGACAAGCGGTCTACC ACAACTAAAATAGCCTCAAATCCCTTAGACTTAGGCAACCCTGTAATGAAATCAATTGAGACATCTTCCCAGATTTGGTT CGGAATCGGCAGAGGTTGGAGAAGACCGGCAGGAGCAGCCGCAAGGTATTTGTGACGCTTACAAGTATCACAACGTCGAA CGAATTCCTGAATTGTGTTTTTCATTCCAATCCAATATAGGTTTTCCGCCACCCGTCGATAAGTTCTCAGAAATCCGGAG TGTCCTCCTTGAGGTGAGGTGTGGTACTCTTGGAGCATTCGAGGAATTAAAGAAGAAGTTTGGGATAAAACCAACCTGTC TTTGTATAACAAAACTCCCCTATGCAAGCGAAACTCAGGGTGTGCATTGGAACCTTGCCGCAGAGCTGTGATGATGGCTT GGAGTTTGATATCAGTTTGAATCTCATCTGCTACCAAGGTTTGTTCATTCCATATAGGATATGATGCCAATGTGCGACAT TCCCCTGATTCACTTACCCTTGACAACGTGTCTGCGCCTTTATTTAGCTTTCCGGGTTTATAGACTATATCAAAGTTGTA GCCTAGAAGCTTGGCTGCCCAATTTTGCTGATCCCCAGTAACTATCTTCTGATGTAACAACTCCTTCAAGCTTTTTTGAT CAGTTGAGACCAGGAACTTCCTCCCTAAGAGGTAGGGCCTCCAATGTTGAATCGCTAATGCCACAGCCATCAATTCTTTT TCGTAAGCGGACTTGGTCAAGTTTCTTACTCCCAGGGCTTTGCTAAAGTAAGCTATAGGGTTCTTCCCTTGCATTAAGAT GGCTCCTATTCCATTCCCAGAAGCGTCACACTCCAGCAGGAATTCTTTGTCAAAATTTGGCAGATTCAGAACTGGAGCTG TAGTTAACTTTTCTTTGAGAGTCTCAAAAGCGTGTTGAGCCTCGGGTCCCCAAACGAAGGCATCTTTTTTGGTCAATTCA GTCAATGGCTTGGCCACCTTACCGTAGTCACGAATGAACTTACGGTAGTAGCCTGTTAACCCTAAGAAGCCGCGAACCCC CTTGACGTTGGTTGGCTTTGGCCATTGCACCACACTCCTGATCTTATTGGGATCGACTGCAACTCCGTGAACTGAGATTA AATGCCCAAGATACTCCACAGTAGACTGGGCAAAACTGCATTTCTTTTTATTTGCTGTCAGCTCCTGCTTACTAAGGACT TGTAAGACCTGCTCCAAGTGAAAGAGATGCGTTTCCCAATCCTTGCTATAGATCAAAATATCGTCGAAGAAAACCAGGAC ACCTCTGCGTAACATAGGCTTGAACACTTCGTTCATCAAACTCTGAAAAGTGGAGGGGGCATTCATGAGTCCAAATGGCA TGACCATGAACTCGTAATGCCCCTCATGGGTCCGGAATGCCGTTTTATGTATATCAGTCGCGCGCACCCTGACCTGGTGA TAGCCTGATTTAAGGTCTAACTTAGAGAAGAATGTTGCTCCGTGTAGCTCATCCAAGAGTTCCTCGATGACGGGGATGGG GAACTTATCTGGCACGGTGACCTTGTTGAGTGCTCGATAATCAACACACATACGCCAAGTATTGTCTTTCTTCTTTACTA ATATCACAGGGCTCGAGTAAGCACTCGAACTTGGCCTAATGATTCCTGTAGCTAACATTTCCTTGACCTGCTTCTCGATT TCATTCTTGTGCAGGTGGGGATACCGGTAGGGTCGAACATTCACCGGTCCCTGGCCTTCTTGAATGTTGATGCAATGTTC ATGCCCACGACTTGGTGGTAGACCCTGTTTTGCAGTGAATACTTCCTTGAACCTTTCCAATAGCTCACTCAACTCTTGCT GTTGTTGAACAGTCAAGGTTTCCTCCACAAACTTCTCTGTGCGTGGGGTTTCACATCGGTACAGGACCCCTGCGTCTTCC GCTCGTATCCTTCGAAGTGTTTGCTGGAGTGCCACCATGGAGTCTTGCCCTGTTTTGAGTCCTTGCAGCTTAACCCACCG CTGACCATCCCAGAAACGCATTGACTGCGTGTGCCAATTTGCGATGGTGTCTCCTAAAGTTTTCAACCATTCAATGCCCA ATACCACGTCGGGTCCTCCCAATTCAAAAAGCTGAGGCGCACAATTGAGATGGTAGTCTCCTAACTCCAATCGGATTTGC TTGCAGCGCCCTCTGACATGAGTTTGGAATCCATCGCCCAATTTGATGGTCATTCGTGGGGTGTCCTCTACTTCCCATCC CATGCGTTGCACAAGCTTGTGGTCAATGAAGTTGTGAGTTGCCCCACTGTCAACCAGAACCAGTACCGGGACTCCATTAA TGGTCCCCTGAAGCTTAATGGTTTGCGGTTTTTCCTGGGATTCTTGTGCCATGTTGGAGAAGCTCATCATGCTCATCTCT CCTTGATTTTCCTCTTCTGGTTCCTCGAGCTCCATAGCCAGAACATTTCCCTCCTCAACTTCCTCATCTCCTTCTTCTAC GATTAGGACTCTCAATTGTTTGTCAGGGCATTGGTGTAAGGGGTGGTATGACCCCCCACACTTGAAGCATTGCCCCTTTT GTCTCCTCTCAAGTAGTTGCGGGTAGGTTAAGTGAGAAAAGCCCCGGTCCCTAGGCCCAATTCGTTTTTGCTCCGGTTGA GTTTTTGTTTCTCCTCGTGGGCCGTTGAAAGTGGGCTTGTTCGCTGAGCCCGTGTCCTTTCCTCCCTTCACCCAAACCCA ATCTGCCCCACCGGTTCTACCCGATGCCCCCAATCCATTCTTATAACCCGAACCGCCTCCAAAACGGTTGCCCAGGGTAT AACCCGAACCCGTTTCACCCTTCACTTCCTTCTCTACTGCTCGCGTGAGAACCAGCAATTTGGATCTACTTACTCCGCCC ATCGCCACCATACTCCGGACCTTTCCCCGAATCTCCTCCTTCAATCCATGGAGGAAATATCCCTGGAATTGTTTGTCAGG GAGTCTAGGAATTTGAGCAGTAAGATACTCAAACTCTGTGATGTATTCTTCGACTGAACCACGTTGGCTCAACTCCGTTA GCTGCTCATAAACGTCCCCGTCACCATGTCCGTCGTAGCGTTCGAGCAAGGCTTCCCTCAACTTCTCCCATGTGAGAAGC TCTTTAGATTCGAGTAAGGAATTGTAGAAATGGATGGTTGGACCTTCCATACTCAACTGGGCTAAACTGACTTTCACCTC CGGCGAGGTCTCCTGGACGCGGAAGTAAACCTCGGCCCGCGATATCCATCCCGCCGGGTCTTTCCCCTCGAACGGTGGTA ACTCCACTTTTTTGACCGATTGACGAAATTCCGTCAAGGCGTTGCCGTTCAACTGAGGTGTGCGACGCTCGGAATCAGTT CCGATCGTCAGATCTGAGACCTTCTCTACCGCGATGCTCTTAGCTCCCGATGATCCTCCTGGGTCACGATTGACACTGGC ATCCTCATTCTGAACAGATTTTCCCAGCGATCGCTCCATCATGGCCACCAGCGAGGTCGGCAGATCCTTCACTGCCGTCG TGACCGCAGCAAGTGAGGAACGCATTTCTGCTAGTTCCGTTTCCAAGGCATCGATCTTGGCCTCCATTGGGTACGTCGTA TTTTTGGTTTTCTTTGGCGGCATTAACTGGTTCCGGTGAGTTTCTCCGGCGTGAAGATCCGGCAGGTCGGACCAAATTTG TTAGGAACCCACTCACACACACCACAAATGAATGAGAAAATTCAGGAAAGTGATTGTTTATTGATTGTGGAAAGAAATTA CAGAGAAGGAATGTGTTCCCAAATACTCTGCCCAGAGCAATGCTCCTATAGGAAGCTAATGCTTCCTATCCATACTAACA GCTAGCAATTCTCTGGATACCCACTCTACCTCTCTTACTCTCCTTATATACTGGAGATATTACAATCACTCAATCTCTCT CTATTCTGTTAGACGGTTAGCCACTATTCCCTTTCTTGCCCCTCCTAGAATATACCCTCCATACTTTAGGGCCCACATCC TCATGATGAGCCAATCTCTCTTGTGGCCTTGATACCTGACCCTCGTTCCTAACAATTTATGTATTTCAGAAGCAAAAGAA TTAATGGCAGTGATACGTGCATGGTGGAACTTTATACTTTGACCTGACATTAGAACAATTGATTTCAGATTGAAGCAGGT TCAAAAGTCGAATTGCCTTTTTGGCTTGCTCATGAATTACAGTTGAGACAAGCAGTATCAGTAAATGTTCCCCCTTGTTT CAATCAAAAGTAATGATAATCTTTTATGGCTTTTTATGACTTATAAGCACATTATATAGTAGAGCATGTCATGACATTAA CAATGAGTTAGGAAGCACTCTTAAGTACATTTGTATTGCTGTGTTACACTTAAAATGCTTTTGCAGACATTTCTTGTTAA CCCTTGTTTCATGGGTCAAAGTTGAATTTGGCCTAGGTGTTTTGATTTCTTTTTGGGCTTTGTTGTTGTACAGGGTGGTT TTGCCTGGGCTTTTAGGGTTATTTCTTTCTGTCTGTTGGGCCTCTTTGTCTTGGTCTTTTTGTTGATTTGCTCTTTTTTT CTGTAGCAGATCAGTCGCGTTTGTCTTTTCTATTCAAGAGGCATGCTCTCAGACCTTGATATATTAATATATATTTTCAC TTTAAAAAAAAAACCTTATTTTTCATGTATTTTTAAATTACTGTCATTAAGTGCATGGTGTTGTACGGAAGTATGGATAG CTACAAGTTACTCAACGATCAGTTTATGTGGTTATTTATCATAAAAGTTATAGAACTAATAATGACATATGCATTCAAAT CTGCATTATCATTCACATTCAAATGTACTACATGAATGTTGATAGTGTTAGATTGCTTTATATTTAAGTTTAAAATGTTA GTTTTATTATCTTATAGTTGATGATTCTTGACTTCAGAACAAGGCTAGAGATCCAAGCTGATTCTGCATCTGTGGATCTC AAGTCCAGATGTCAATTCTTTTATGAATTTGGTTGCAAGATAGCACCGATGTAAGTCTTGGATATTCCTATATTTTCTTG CTTGCAGCATTATTAAAGAGTGCCTATTTCTCTTTGGCTTTATAATCTTCTTCTCTGATATTTAAATATATATTTTATTC TTGAGTTTTGTCTTGGAAGATCATCGCTGTCATGTTTCATCATCCTTAATTTGGCACATATCTGAAATCAAATTTAGTGA GTAACTCGATTAACTAACTACCTTTGTCTTGTATATACAGAACAAACGTCAATTTAAATAGAGAGAAGAACTGCATATTT GTTTTTCATGTTATATCAATTCAAGTCTTTAAAAACGCTTATATCATTTTAGTTCATGCACAATTGAAATATATGTCGTT CTTCTTTGCCTTGTCCTTCTTCATGCAACTATCCTGCCATTGAGTTTTATTTTTTGCTTACTTAATACTCATTTATGGCA GAGTTGGCGACAGAACCATTGGGTTTCTATTATTATCTGCATTTAAGAGTAGGTACAAGGAAGTCCTCACAAAGGCACAT ACTGCAGCATTTGCAGCTGGCTCCAAATTTTGGACTATTCTGACAAAAGAAGAGATCAATTGTAAGAATTGTTCTACTTG CTAAACAAACATACCTTTTATCTTTGTTTTTGTGGTCACATCTTTATACATTTTAATATTTGTATGATCTAATGCTTATC TTGTAGTGTATGAGGCAGCTCAATCTGCAATGGCATCCTTCAAGAAGTGGCGAATGGGGGGGCCCAGATTTCAGATATCT AATGTTCTGGGAAGAAAGAGAAAATCAACTGAATAG
CDS sequence (LotjaGi6g1v0074400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACTACTATGATATTGATGACATTATGGTAGAGGAAGAGATTGTGTCGGTGGTATTTCAGAAGCCAGCATCTGG AGTGGGAATAGATCCAAGTTCTGAGACCGACTCTATTGAAGCAGGTTCAAAAGTCGAATTGCCTTTTTGGCTTGCTCATG AATTACAGTTGAGACAAGCAGTATCAGTAAATGTTCCCCCTTGTTTCAATCAAAAAACAAGGCTAGAGATCCAAGCTGAT TCTGCATCTGTGGATCTCAAGTCCAGATGTCAATTCTTTTATGAATTTGGTTGCAAGATAGCACCGATAGTTGGCGACAG AACCATTGGGTTTCTATTATTATCTGCATTTAAGAGTAGGTACAAGGAAGTCCTCACAAAGGCACATACTGCAGCATTTG CAGCTGGCTCCAAATTTTGGACTATTCTGACAAAAGAAGAGATCAATTTGTATGAGGCAGCTCAATCTGCAATGGCATCC TTCAAGAAGTGGCGAATGGGGGGGCCCAGATTTCAGATATCTAATGTTCTGGGAAGAAAGAGAAAATCAACTGAATAG
Protein sequence (LotjaGi6g1v0074400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANYYDIDDIMVEEEIVSVVFQKPASGVGIDPSSETDSIEAGSKVELPFWLAHELQLRQAVSVNVPPCFNQKTRLEIQAD SASVDLKSRCQFFYEFGCKIAPIVGDRTIGFLLLSAFKSRYKEVLTKAHTAAFAAGSKFWTILTKEEINLYEAAQSAMAS FKKWRMGGPRFQISNVLGRKRKSTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 66 | 66 | 1.73E-20 | – | |
| PANTHER | 1 | 183 | 183 | 2.0E-67 | ||
| Gene3D | 1 | 167 | 167 | 2.0E-46 | ||
| Pfam | 45 | 148 | 104 | 1.2E-10 | ||
| CDD | 61 | 167 | 107 | 3.19776E-32 | – | |
| SUPERFAMILY | 65 | 166 | 102 | 5.07E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0074400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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