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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0074400 |
| Transcript ID | LotjaGi6g1v0074400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA replication complex GINS protein PSF3; TAIR: AT1G19080.1 GINS complex protein; Swiss-Prot: sp|Q0UPV4|PSF3_PHANO DNA replication complex GINS protein PSF3; TrEMBL-Plants: tr|A0A1J7H7L2|A0A1J7H7L2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0074400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14134536..14136359) extracted from Lotus japonicus Gifu genome v1.2.
TACCCTCCATACTTTAGGGCCCACATCCTCATGATGAGCCAATCTCTCTTGTGGCCTTGATACCTGACCCTCGTTCCTAA CAATTTATGTATTTCAGAAGCAAAAGAATTAATGGCAGTGATACGTGCATGGTGGAACTTTATACTTTGACCTGACATTA GAACAATTGATTTCAGATTGAAGCAGGTTCAAAAGTCGAATTGCCTTTTTGGCTTGCTCATGAATTACAGTTGAGACAAG CAGTATCAGTAAATGTTCCCCCTTGTTTCAATCAAAAGTAATGATAATCTTTTATGGCTTTTTATGACTTATAAGCACAT TATATAGTAGAGCATGTCATGACATTAACAATGAGTTAGGAAGCACTCTTAAGTACATTTGTATTGCTGTGTTACACTTA AAATGCTTTTGCAGACATTTCTTGTTAACCCTTGTTTCATGGGTCAAAGTTGAATTTGGCCTAGGTGTTTTGATTTCTTT TTGGGCTTTGTTGTTGTACAGGGTGGTTTTGCCTGGGCTTTTAGGGTTATTTCTTTCTGTCTGTTGGGCCTCTTTGTCTT GGTCTTTTTGTTGATTTGCTCTTTTTTTCTGTAGCAGATCAGTCGCGTTTGTCTTTTCTATTCAAGAGGCATGCTCTCAG ACCTTGATATATTAATATATATTTTCACTTTAAAAAAAAAACCTTATTTTTCATGTATTTTTAAATTACTGTCATTAAGT GCATGGTGTTGTACGGAAGTATGGATAGCTACAAGTTACTCAACGATCAGTTTATGTGGTTATTTATCATAAAAGTTATA GAACTAATAATGACATATGCATTCAAATCTGCATTATCATTCACATTCAAATGTACTACATGAATGTTGATAGTGTTAGA TTGCTTTATATTTAAGTTTAAAATGTTAGTTTTATTATCTTATAGTTGATGATTCTTGACTTCAGAACAAGGCTAGAGAT CCAAGCTGATTCTGCATCTGTGGATCTCAAGTCCAGATGTCAATTCTTTTATGAATTTGGTTGCAAGATAGCACCGATGT AAGTCTTGGATATTCCTATATTTTCTTGCTTGCAGCATTATTAAAGAGTGCCTATTTCTCTTTGGCTTTATAATCTTCTT CTCTGATATTTAAATATATATTTTATTCTTGAGTTTTGTCTTGGAAGATCATCGCTGTCATGTTTCATCATCCTTAATTT GGCACATATCTGAAATCAAATTTAGTGAGTAACTCGATTAACTAACTACCTTTGTCTTGTATATACAGAACAAACGTCAA TTTAAATAGAGAGAAGAACTGCATATTTGTTTTTCATGTTATATCAATTCAAGTCTTTAAAAACGCTTATATCATTTTAG TTCATGCACAATTGAAATATATGTCGTTCTTCTTTGCCTTGTCCTTCTTCATGCAACTATCCTGCCATTGAGTTTTATTT TTTGCTTACTTAATACTCATTTATGGCAGAGTTGGCGACAGAACCATTGGGTTTCTATTATTATCTGCATTTAAGAGTAG GTACAAGGAAGTCCTCACAAAGGCACATACTGCAGCATTTGCAGCTGGCTCCAAATTTTGGACTATTCTGACAAAAGAAG AGATCAATTGTAAGAATTGTTCTACTTGCTAAACAAACATACCTTTTATCTTTGTTTTTGTGGTCACATCTTTATACATT TTAATATTTGTATGATCTAATGCTTATCTTGTAGTGTATGAGGCAGCTCAATCTGCAATGGCATCCTTCAAGAAGTGGCG AATGGGGGGGCCCAGATTTCAGATATCTAATGTTCTGGGAAGAAAGAGAAAATCAACTGAATAG
CDS sequence (LotjaGi6g1v0074400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAAGCAGGTTCAAAAGTCGAATTGCCTTTTTGGCTTGCTCATGAATTACAGTTGAGACAAGCAGTATCAGTAAA TGTTCCCCCTTGTTTCAATCAAAAAACAAGGCTAGAGATCCAAGCTGATTCTGCATCTGTGGATCTCAAGTCCAGATGTC AATTCTTTTATGAATTTGGTTGCAAGATAGCACCGATAGTTGGCGACAGAACCATTGGGTTTCTATTATTATCTGCATTT AAGAGTAGGTACAAGGAAGTCCTCACAAAGGCACATACTGCAGCATTTGCAGCTGGCTCCAAATTTTGGACTATTCTGAC AAAAGAAGAGATCAATTTGTATGAGGCAGCTCAATCTGCAATGGCATCCTTCAAGAAGTGGCGAATGGGGGGGCCCAGAT TTCAGATATCTAATGTTCTGGGAAGAAAGAGAAAATCAACTGAATAG
Protein sequence (LotjaGi6g1v0074400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIEAGSKVELPFWLAHELQLRQAVSVNVPPCFNQKTRLEIQADSASVDLKSRCQFFYEFGCKIAPIVGDRTIGFLLLSAF KSRYKEVLTKAHTAAFAAGSKFWTILTKEEINLYEAAQSAMASFKKWRMGGPRFQISNVLGRKRKSTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 130 | 130 | 5.3E-35 | ||
| SUPERFAMILY | 2 | 29 | 28 | 3.92E-6 | – | |
| PANTHER | 2 | 146 | 145 | 6.2E-52 | ||
| Pfam | 8 | 111 | 104 | 6.4E-11 | ||
| CDD | 24 | 130 | 107 | 3.85419E-32 | – | |
| SUPERFAMILY | 28 | 129 | 102 | 2.62E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0074400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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