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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0076400 |
| Transcript ID | LotjaGi6g1v0076400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT3G55990.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q9LY46|TBL29_ARATH Protein ESKIMO 1; TrEMBL-Plants: tr|A0A151SNU7|A0A151SNU7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0076400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14502778..14507206) extracted from Lotus japonicus Gifu genome v1.2.
AATCAAAAAAGAAATGTAAGTGGATTATAAAAATTAAAAAATGTAAGTGGCATGAGGGAGTTCCATCCACTCATCTACTT ATCACATATCACAAATGTTAACATCTTCAGATGGATTGTTATATGATGGTTCAGCAAATCTAATTTATGGAAAGTCCATA ACTTAATTATATTCTATGTTGATAATATACAAATAAAATTTCGACCCTACCCTGCTTTAGGTGGGGGGCTTCACAACCCA ATACAACACACACACACTCACCACTAACCTATTTCTACTAAACCACTTTCTGACCTTCCACCAAGGATCAAAACTTTGCC TTTGCATTATGAAACTGAAAGACAACAACATGGTGTCTAATAAAGTGCTTGAACTCCACCACATCATAATATAATGCACC CTTTCAACTGACTCAGACTAAGACCAACTCTAAAGACTTTGAGATCACTCCTCTGAGATCACTACTCTCACCTTTTATCT GAAAATTTGAGGGAGATGTTGAAATGAAAGCTGTTACAAATGGCTTATATGAATTTAAAAAGAAAATAGAGAAACAAAGA ACTTGATAATGTGAGAAAGACATTTCTCTTAGGAGCTCAAATCACTAATGAGTAAATACCAAAAACCATCAAGAGATTTA ATCCATTTTTACTGCGTATCTCTACCCAAAACTTGAAAACATTGGATTTATGAGTCACATTTTATAAAGTTCTCACCTCA TCTATCGTTAACTAATGTGAGACTCCAAACTCACGCTTGAATTCTAATTCTCCCTCACCGCACCAAAACCATATTCTGTT CCAGTTTCTTCAAAGACAACTCCATCTCACCAAACCTCAATTAAGAAAATCGTTGCTTCTTCACCTCAATAATGTCCTTC ATTTCTTTCTATATTTCTATCTCTTTCTCCCCAATCCTTTCACAAAGGCCTTCTGTTATTCACTCTTTCTCTCTAGTCTC TACTATGCAGCCTCTTAGCCGCAAGGCTCATCTTTTCAATTTTGAAACTTTTGCCACCATGATGAAAGCAAGAAAGAACA ATAAGCTCTCAATTTCTGTGGTGGTCTTCTCCATGTTCCTCATTGGTGCCTTCATGTACAACGAGGATGTTAAGTCAATT GCAGAGTTCACATTCTCCATGTCCAAACCTCAAGAAATTCAAGAAGCCAAATCAGAAACAGAGAAAGACAAGGCCACTGT CATGGTTACAGAGAGTTCATCAAGAACTCAGTTGAAGAAAATTCAGGAGGATGATTCTGAGGAAACCCAGAAGCCAATTG ACATGAAATCCATGGTGGCAGAGGAAAAAGAAGAAGAGGAGGATTCTGAGCTTGTTGTGTTGCCTCCTGAAGAGTGTGAC TTGTTTACAGGGAAATGGGTTCTTGATAATGTGACACACCCTTTGTACAAAGAAGACCAATGTGAGTTTCTCACTGCTCA AGTAACTTGCATGAGGAATGGAAGACCTGATTCTCTGTATCAGAATTGGAAATGGCAACCTAGAGATTGTTCTTTACCCA AGTAACCTGCAATTTTTTTCTTTTTCTTTCTCTATGTTTTCTGCTTTGTTTTAACAATTTTGAATGATTAAGTTTTGTGT GAATTCTCAAGGTTTAAACCAAGGCTTCTGCTTGAGAAGCTTAGAGGGAAGAGGCTCATGTTTGTTGGAGACTCATTGAA TAGGAACCAGTGGGAATCAATGATTTGTCTGACCCAATCTGTTATTCCTCAAGGAAGAAAGAGCTTGAACAAGATTGGTT CTCTTTCTATCTTCACAATTGAGGTTTGTCTTTTTTTCCACCTTTTCTATCTATGGTAGGCCATTTTTGTCCACATAATG ATTAACGGTGAGCATAATACTAGTACTGGTAGAATGATAAAGTTTTCAACATCATTAATTATGACACTTGTTGGCTAAAA TCAGTCAGAGTCATGCTTCAATGGGTCACTTGATGACCCATTTGGCATGTTTAATTGGAAGGTCACGTATTTACTAATTT GGATCTTGTCTGCTAGATCTGGCTTTGGATTATTGTGCCAATATCCGGTAATTCAGGGGGAACAAGATGGACCTATATAA ATTGATGGATTTGAATTCTAAGGAGAAATCTTACATTTAGGAGCTAAACATTTTAAGCCGTCTAAACTTAATATGAGGAT TCACATTTTAAAATGTAGTTGGTGACTTAAAATGTGATCACTCAAACTTTGATTAGACGCCTTAAAATATTTGAATTGCA TGAATGCAGGAGACACAAAAAACCCAAATCATTGAGCAGTTTTCTGATTGTGTGTGTTGCAGGATTATAATGCTACAGTG GAATTCTACTGGGCACCATTCCTTGTAGAGTCAAATTCAGATGATCCAACAATGCACAGCATATTGAACCGTATTATCAT GCCTGAATCAATTGAAAAACATAGTATGAATTGGAAGAATGTGGACTATCTGATCTTTAACACCTACATATGGTGGATGA ACACTGGCACCATGAAAGTCTTGTAAGCACCACATCATAGTCTCTTTGAAAGCATCTTAGCTTATTTTCTAGCAAATTCA GGAAACTAATTTGTGTTTTCATGTTAATTATGGGGTGATGTGAAATGCAAAAGACGAGGGTCGTTTGATGAAGGATCCAC TGAGTATGATGAAATCCCTCGGCCAATAGCATATGAGAGAGTCCTCAAGACTTGGTCAAAGTGGGTGGATGACAACATTG ATCCAAATCGCACCAAAGTTTTCTTCTCTAGCATGTCTCCTCTTCATATCAAGTAAAGCTCAAATAAATCTTAATTTGTG CCTTTTTTATTCTCATTTTTTCACTAAAATAGTGATTATGTGGTCAAATTGTGATAATGCTTGCTTTTGCGATAGCCAAT GAGTGCCTAATTTTTAGCTTTTGCATGCATTTTCATCACTTTTAATGGGTTGTTTTATTTTGATGTCCCCAATGTTGCAC ATGACCACTTTTTTGGGGGTCTACTATTAGGCTAGCAAATTTGTATTTTTATGATAGCTTTTAGAAAGTGAATTACCAAA TTTATAAATAAAAGATCATGCATTGCAGGTACTGATGCTTTAGTTGATCAAATTTTAAGAATTTTTGAAAGTTTTTTTTC TTTTCTAACGACTAACTTGATTGAGACATGATTTTGTAGAGGTTGATTTGGTGATTCGCTCCAATAACTATTAAAGTTCC TTCTGCAATTAATTCGAAATCAATTTTGAGGAAAAAAATTGTGGATATAGTTTTTAAATGTAAGAACTGATTATGGTAAA ATAAAAAGTTATCTAAAGATGATATAACAAAGAAAGCCTAATGGCTGGCAGTGTAATTTTCAAATACACTTCAGTATTTG ATTATGCCATTAGGTGAGACCATCCTTGCTGCAATCTTATTCCATGACATGGTTGGTAATTTCAAGTTAGATATATATTT GGTATTTTGTTTGGTGAACCACTACTACTATGCTTTTACGTTTGCCAAATTTAAAGTTTACCTTGTGAATTATTTTTGAA TTTTAACATTTCTAAGTTACACATGTGTAATCTTTTAGGAGTGAAGCTTGGAACAATCCAAATGGCATAAAATGTGCCAA AGAAACAACACCAATTCTCAACATGTCTACGCCATTAGATGTGGGCACAGATCGTCGCCTATATGTGATTGCCAACAATG TGACACACTCAATGAATGTCCCAGTGAACTTCCTCAACATCACAAGCTTATCAGAGTTAAGAAAAGATGCACACACCTCT GTGTACACCATTCGTCAAGGAAAGATGTTAACTCCAGAGCAACAAGCTGAACCAGCTGTTTATGCAGATTGTATCCATTG GTGTTTACCTGGTTTGCCTGATACATGGAACGAGTTCCTTTACACACGTATCATCTCACAGTCTTGACCCACAAAAGCAG GGTTTTAAATTGCGACGGCAACATAACGGGTTTTGGAGTGTCTGCATCGGAATCATGGCTGCAATTGCGGCCGTATAGAC CCATATTTGTTCTCAATTCCGCAACGCTCCCTAATTTAAATCCCTGCACAAGAAGTATATATACCTTCACACACTTTTTT TTTCCTGCACAATTGTGATTATTTCTCTTTTTACTTCAAAAAGTTTGTTTTTTCCTCTCCTTTTATTACACCAGTACTCT CTGCTTTTAGTTTGTTAGTTTTGTCTATGTAAGTTCTTGTAATTTTTGTTTAGATGTTTCTTTTTAGCTTTTCTATTCCT ATAGGTTGAGATCAAGTGCCTGGGCAATTGGGCAATGATTTTCTTTGTTAAGCAAATTTAGTTGTGGTTGGAAGCAAAGC AAGCACCTGAATTGTACAATGAATCCTTCAAGAGAAAATAAAGGAATTACACATTGTATTTGTGACTGGACTCTGGAACA TCATTTTCTTACAGATTTGATTTAGTTAA
CDS sequence (LotjaGi6g1v0076400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTTCATTTCTTTCTATATTTCTATCTCTTTCTCCCCAATCCTTTCACAAAGGCCTTCTGTTATTCACTCTTTCTC TCTAGTCTCTACTATGCAGCCTCTTAGCCGCAAGGCTCATCTTTTCAATTTTGAAACTTTTGCCACCATGATGAAAGCAA GAAAGAACAATAAGCTCTCAATTTCTGTGGTGGTCTTCTCCATGTTCCTCATTGGTGCCTTCATGTACAACGAGGATGTT AAGTCAATTGCAGAGTTCACATTCTCCATGTCCAAACCTCAAGAAATTCAAGAAGCCAAATCAGAAACAGAGAAAGACAA GGCCACTGTCATGGTTACAGAGAGTTCATCAAGAACTCAGTTGAAGAAAATTCAGGAGGATGATTCTGAGGAAACCCAGA AGCCAATTGACATGAAATCCATGGTGGCAGAGGAAAAAGAAGAAGAGGAGGATTCTGAGCTTGTTGTGTTGCCTCCTGAA GAGTGTGACTTGTTTACAGGGAAATGGGTTCTTGATAATGTGACACACCCTTTGTACAAAGAAGACCAATGTGAGTTTCT CACTGCTCAAGTAACTTGCATGAGGAATGGAAGACCTGATTCTCTGTATCAGAATTGGAAATGGCAACCTAGAGATTGTT CTTTACCCAAGTTTAAACCAAGGCTTCTGCTTGAGAAGCTTAGAGGGAAGAGGCTCATGTTTGTTGGAGACTCATTGAAT AGGAACCAGTGGGAATCAATGATTTGTCTGACCCAATCTGTTATTCCTCAAGGAAGAAAGAGCTTGAACAAGATTGGTTC TCTTTCTATCTTCACAATTGAGGATTATAATGCTACAGTGGAATTCTACTGGGCACCATTCCTTGTAGAGTCAAATTCAG ATGATCCAACAATGCACAGCATATTGAACCGTATTATCATGCCTGAATCAATTGAAAAACATAGTATGAATTGGAAGAAT GTGGACTATCTGATCTTTAACACCTACATATGGTGGATGAACACTGGCACCATGAAAGTCTTACGAGGGTCGTTTGATGA AGGATCCACTGAGTATGATGAAATCCCTCGGCCAATAGCATATGAGAGAGTCCTCAAGACTTGGTCAAAGTGGGTGGATG ACAACATTGATCCAAATCGCACCAAAGTTTTCTTCTCTAGCATGTCTCCTCTTCATATCAAGAGTGAAGCTTGGAACAAT CCAAATGGCATAAAATGTGCCAAAGAAACAACACCAATTCTCAACATGTCTACGCCATTAGATGTGGGCACAGATCGTCG CCTATATGTGATTGCCAACAATGTGACACACTCAATGAATGTCCCAGTGAACTTCCTCAACATCACAAGCTTATCAGAGT TAAGAAAAGATGCACACACCTCTGTGTACACCATTCGTCAAGGAAAGATGTTAACTCCAGAGCAACAAGCTGAACCAGCT GTTTATGCAGATTGTATCCATTGGTGTTTACCTGGTTTGCCTGATACATGGAACGAGTTCCTTTACACACGTATCATCTC ACAGTCTTGA
Protein sequence (LotjaGi6g1v0076400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFISFYISISFSPILSQRPSVIHSFSLVSTMQPLSRKAHLFNFETFATMMKARKNNKLSISVVVFSMFLIGAFMYNEDV KSIAEFTFSMSKPQEIQEAKSETEKDKATVMVTESSSRTQLKKIQEDDSEETQKPIDMKSMVAEEKEEEEDSELVVLPPE ECDLFTGKWVLDNVTHPLYKEDQCEFLTAQVTCMRNGRPDSLYQNWKWQPRDCSLPKFKPRLLLEKLRGKRLMFVGDSLN RNQWESMICLTQSVIPQGRKSLNKIGSLSIFTIEDYNATVEFYWAPFLVESNSDDPTMHSILNRIIMPESIEKHSMNWKN VDYLIFNTYIWWMNTGTMKVLRGSFDEGSTEYDEIPRPIAYERVLKTWSKWVDDNIDPNRTKVFFSSMSPLHIKSEAWNN PNGIKCAKETTPILNMSTPLDVGTDRRLYVIANNVTHSMNVPVNFLNITSLSELRKDAHTSVYTIRQGKMLTPEQQAEPA VYADCIHWCLPGLPDTWNEFLYTRIISQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 58 | 58 | - | – | |
| PANTHER | 45 | 105 | 61 | 2.3E-237 | ||
| PANTHER | 45 | 105 | 61 | 2.3E-237 | – | |
| TMHMM | 59 | 76 | 18 | - | – | |
| Phobius | 59 | 76 | 18 | - | – | |
| Phobius | 77 | 509 | 433 | - | – | |
| MobiDBLite | 116 | 137 | 22 | - | – | |
| MobiDBLite | 120 | 137 | 18 | - | – | |
| PANTHER | 146 | 508 | 363 | 2.3E-237 | – | |
| PANTHER | 146 | 508 | 363 | 2.3E-237 | ||
| Pfam | 160 | 213 | 54 | 5.0E-22 | ||
| Pfam | 215 | 503 | 289 | 2.9E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0076400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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