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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0076800 |
Transcript ID | LotjaGi6g1v0076800.7 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T8H5|I3T8H5_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14563693..14565072) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGTACTCAATTCTCTTCACATTCTTGTAACTTGTTCATGCGTTTTTGCTACCAATTTCCACCGTGAGGTGTTTCCT CTGATCTGTATTTGTGTATTGAATGTGCAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTCCGGAATCATGACTG ATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATGATCCCCAGAAAGAT AAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCATATCCCTCGACCCAAGATGAAGATTTGCATGCTTGGTGATGCTCAACA CGTTGAAGAGGTATTGTTGTGTTTTATTATTACAATTACTATAACATGATATAGTGCTTTAAAGACCATTTGTTTCTGTT CTTGTGTGCCATTTTTGAGTTTGTTTTGAACATTTGAATTACTGGTTGGTTATTAGTATTTAGTAATGACTTAAGTAACT TGAAATGACACAATGTTTCTGTAATTTTCTAACCGTAATTCGAGGGAGCTATTTTTTGCTTTAGAGTTTTTTTAATTTTT GTTCAATTGTTGGGAACTCTGTTGTGTTAATGTCTCTTCGCTACTCTTCAGGCGGAGAAAATTGGATTGGACTGGATGGA TGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCATGCATTTTTAGCTT CTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCCCCCCACCCCAGATG TTGCTCTAGGGTTTTTTAAGTTTTTGGACTTTGAGTGTACTTGGTGATCTTTGTTATGATCATTTCTCATTAATAACTGG CTACTTTTGTTTTGTATTTCTTTTGTGTTACTAGCTGCTTAAGAATCTTCTAAACTGCTTCATATATTCTCTGGTTCAAG CTTTATCCCCCACCCACCCCTATCATGTGATTAATTGATTTGGTTAAAAAAATCAAGAATTGCTATATTAAGCATGTGAT TCTTTCAAATTTTCAAATATTGCTTTAGTTGATTTTTATATTTGTCTGACTATGCAGGCAAGTTCCCTACACTTGTCACT CACCAAGAATCCCTTGAAGCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTTCAGCTCAAAAAGGTGCTCTGCATGGG AGTCGCCGTGGGTAATGTTAGCATGGAAGAAAAACAGATCTTTCAAAACGTGCAACTGAGTGTTAACTTCCTTGTCTCTT TGTTGAAAAAGAACTGGCAAAATGTAAGTACACTCATAACATTTGAGTTAACCATTGCTTTCTGATTTCATTTTAGTTAT CCGTTCTTGATGATAATTAA
CDS sequence (LotjaGi6g1v0076800.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTCCGGAATCATGACTGATTCCAAGGAGAAGAATCGCAAATT TGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATGATCCCCAGAAAGATAAGCGTTTCAGTGGCTCTGTCAAGT TGCCCCATATCCCTCGACCCAAGATGAAGATTTGCATGCTTGGTGATGCTCAACACGTTGAAGAGGCGGAGAAAATTGGA TTGGACTGGATGGATGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCA TGCATTTTTAGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCC CCCCACCCCAGATGTTGCTCTAG
Protein sequence (LotjaGi6g1v0076800.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIG LDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPPPQMLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 134 | 132 | 6.0E-83 | – | |
PANTHER | 3 | 134 | 132 | 6.0E-83 | – | |
SUPERFAMILY | 3 | 137 | 135 | 1.44E-38 | ||
CDD | 9 | 134 | 126 | 2.70194E-31 | ||
Gene3D | 22 | 61 | 40 | 6.3E-44 | – | |
Pfam | 22 | 136 | 115 | 1.0E-22 | ||
Gene3D | 62 | 136 | 75 | 6.3E-44 | ||
ProSitePatterns | 116 | 135 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0076800.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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