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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0082200 |
| Transcript ID | LotjaGi6g1v0082200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant cadmium resistance protein; TAIR: AT3G10980.1 PLAC8 family protein; Swiss-Prot: sp|Q9M815|PCR8_ARATH Protein PLANT CADMIUM RESISTANCE 8; TrEMBL-Plants: tr|I1LMW6|I1LMW6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0082200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:15875534..15878438) extracted from Lotus japonicus Gifu genome v1.2.
TTAGAAAGTAAGAGGAGTAAGGATCGAACTTTAGACTGTTAAGTCATAGAGGATATGATACCATGTCAAACAAACACTTA TATCAAAAGCTTAAGCTGTTGAGACATCAATGGTACAAATAATGCAAATGGTTAATGACCATTATTAGCTTGCTATTATT TGTCTGTATTATTTTCCACAGCCAAAATGAAAGTTCCATATTTTCATTCTTTTCTTCCTTTTTCCTTTTTCTGGCAGGTG AAAACCGGTGACCAGCAGTAATATTTGAACGTTAAAGAAGAAAACCTTTAATCCATTTCTCATTTGTTGGTCACTGTGTT GTTAACGTTACCTGTTACACCTACCACTAGTACGAAAGAACCATTCTTGTTTTGCCAACTCTTTGCATGTGTGTGATGCT TTAGCCTTTAGGTTCAATTTTGTATCTGTGTGTGAGGGAATCACTTGCATTCAAGCACTTTCGTCATGATTGTTCAGCTA ACAGGTATGTCTAGCTCACTTTACACTATCTTCTGCATCTTTACCTTTTTTCTCTAGCTTTTTGGCCTTAGAAATTTGAT TGTTAGTATTCTGGGAAAAAAAAATTCTTGTGGGAACAATTTGCTTTTCAGGATCATATGGTTTGTTTGCTATGCATATT TTTGGGTGTTGGTCTGATGTTTGTCACTGTTCTGTGAGATGAATTTCTTGTATTAATAGATTTAGATTTGGGGTTTTCAT TTCCAACTTTGGCTACTAAGATTCTAGTTCTGAAGTTGTTTATTTTTATTTTATAATATTCTTCATTTACCATGAGATAT TTCTAGTAATTAATTTCCAGTCTTGGATTTTTATTTGATTGGATTAATTGTCCTCTTTGCTTATGGATTCACTGGATGAA TTTTCTTATGGATTAGAAATTTTGCCTTGGCAGCAATTGTTCTATGCACATACCATTGATGATTCTGTTCTGATTTTGAT GTGAAAGCTTGGTGTCTTATATCAGAATTATGGTTTCAGTTGATAATGGTATTGGGATTGGGAATCTCAAAGATGAAATT GAAGAATCTAATGGGACTCCAGTGAATGATTTTGCTTCATTAAATCTTTCAACTTCTAGGGAAACATTTCAGAGTTGCAG TGAAAATCCTCATAGAAGCTCCTTGAGTTCTCTTCTTGACAAAATGAAGTTTGTTAAATTTTGTTCTGCATCTGCCAAAT TCAAACAGCCTGTGAAAGACCAGATATCACAATCTGCGTCTTCTCCTCTTTCAGATAGCCTAAAATCGCGTTTCAGTAGC GTGTTTTCCCGGAAACTTGACTGGGGTTCAATCAAGAAAATGAGCTTGGAATGGATCAGAAACCCGATGAACATGGCGCT TTTTGTGTGGATCATCTGTGTTGCTGTATCGGGTGCAATTCTGTTCCTTGTCATGACAGGAATGTTGAATGCGGTTCTAC CGAGTAAGTCTCAGAGGAATGCATGGTTTGAAGTGAATAACCAAATACTCAATGCACTGTTTACACTTATGTGTTTGTAC CAACACCCAAAGAGGTTTCACCATCTTGTTCTTCTGTTCAGGTGGAGACCAAATGACATCTCTAGACTAAGAAATGTGTA TAGCAAGAATGGAACTCATAAGCCTCATGAATGGGCACATATGATGGTAGTGGTCATTCTCCTTCACTTGAACTGTTTTT CTCAATATGCACTTTGTGGTCTAAACTTGGGGTATAAAAGGGCTGAGAGACCTGCCATTGGAGTTGGAATTTGTGTATCT TTCGCAATCGGCGCGCCTGCGATTGCCGGCTTGTACGCCATTCTTAGCCCGCTCGGGAAGGACTACGATTGTGAGATGGA TGAAGAAGCACAGGTGAAAAAATATTCATTTGCATCCAAAGATCAACAAAGAGTTATTGAAAAAAAACCAAATTGGAGTG GTGGAGTACTTGACATTTGGAATGATATTTCCTTATCATATCTCTCACTTTTCTGCACTTTCTGTGTCTTCGGGTGGAAT ATGGAGAGGCTTGGCTTTGGAAACATGTATGTTCACATTGCTACTTTCATGCTGCTGTGTATGGCTCCTTTCTGGATTTT TGTATTGGCTTCGGTTAATATTGATGACGACAATGTTAGACAGGCAATAGTAGCTGTTGGAATTGTCCTTTGTTTTTTCG GTTTATTATATGGCGGGTTTTGGAGGATTCGAATGAGAAAGAGGTTCAATTTACCTGTCTATGACTTCTGTTTTGGCAAA CCTTCAGTTTCTGATTGCACACTTTGGCTATGCTGTTGCTGGTGCTCTCTTGCTCAAGAAGCAAGGACTGGGAATAACTA TAATCTAGTGGAAGAAAATTTCTGCAGGAAAGAAATTGATAGTGAACAACCTTCAATTTCACCTTTGGCAAGGGAAGATG TAGTAGTATCAACTAACTCTTGCACAAATTCTCCTCTGGGTAACAACTCTTTCCCTTCTGTGATAAAGGCATCTAGTCCT CAAAGTTCAAGCAATGTCTCAAAGGGATGCTATAGTCCAGTTAGGCTTCTATGTACTTTAGGAGAAGAGCATCTTGAAAG AGGTAAGGATGGAATGATGAACCCGCCGACTCCACCATTTATACATAGAGAAGCTCCTTAGTCCCACAAAGGAATGGAGG AATGGTTTTTTTTTTCTTCTTGCAACTTATGTAGCTATGTAATATGACATTATTTGAGATGAGCCCTTTGTACTTATAGT GAATTGATCAGCTAAATCATAGTTTTTTCTATTTTAAGTCTCTCGTACTCATCAATATCAACCATTTATTTTAGGTGCAG ATTTAAGTTATTGGTTATAGATCAAATTATCTATTTAATTAAGTAAATGTCAAAGTGAGTATTTAGGATCATCATTGTGA TGGTAACAACTGCGATTGCAGACAT
CDS sequence (LotjaGi6g1v0082200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCAGTTGATAATGGTATTGGGATTGGGAATCTCAAAGATGAAATTGAAGAATCTAATGGGACTCCAGTGAATGA TTTTGCTTCATTAAATCTTTCAACTTCTAGGGAAACATTTCAGAGTTGCAGTGAAAATCCTCATAGAAGCTCCTTGAGTT CTCTTCTTGACAAAATGAAGTTTGTTAAATTTTGTTCTGCATCTGCCAAATTCAAACAGCCTGTGAAAGACCAGATATCA CAATCTGCGTCTTCTCCTCTTTCAGATAGCCTAAAATCGCGTTTCAGTAGCGTGTTTTCCCGGAAACTTGACTGGGGTTC AATCAAGAAAATGAGCTTGGAATGGATCAGAAACCCGATGAACATGGCGCTTTTTGTGTGGATCATCTGTGTTGCTGTAT CGGGTGCAATTCTGTTCCTTGTCATGACAGGAATGTTGAATGCGGTTCTACCGAGTAAGTCTCAGAGGAATGCATGGTTT GAAGTGAATAACCAAATACTCAATGCACTGTTTACACTTATGTGTTTGTACCAACACCCAAAGAGGTTTCACCATCTTGT TCTTCTGTTCAGGTGGAGACCAAATGACATCTCTAGACTAAGAAATGTGTATAGCAAGAATGGAACTCATAAGCCTCATG AATGGGCACATATGATGGTAGTGGTCATTCTCCTTCACTTGAACTGTTTTTCTCAATATGCACTTTGTGGTCTAAACTTG GGGTATAAAAGGGCTGAGAGACCTGCCATTGGAGTTGGAATTTGTGTATCTTTCGCAATCGGCGCGCCTGCGATTGCCGG CTTGTACGCCATTCTTAGCCCGCTCGGGAAGGACTACGATTGTGAGATGGATGAAGAAGCACAGGTGAAAAAATATTCAT TTGCATCCAAAGATCAACAAAGAGTTATTGAAAAAAAACCAAATTGGAGTGGTGGAGTACTTGACATTTGGAATGATATT TCCTTATCATATCTCTCACTTTTCTGCACTTTCTGTGTCTTCGGGTGGAATATGGAGAGGCTTGGCTTTGGAAACATGTA TGTTCACATTGCTACTTTCATGCTGCTGTGTATGGCTCCTTTCTGGATTTTTGTATTGGCTTCGGTTAATATTGATGACG ACAATGTTAGACAGGCAATAGTAGCTGTTGGAATTGTCCTTTGTTTTTTCGGTTTATTATATGGCGGGTTTTGGAGGATT CGAATGAGAAAGAGGTTCAATTTACCTGTCTATGACTTCTGTTTTGGCAAACCTTCAGTTTCTGATTGCACACTTTGGCT ATGCTGTTGCTGGTGCTCTCTTGCTCAAGAAGCAAGGACTGGGAATAACTATAATCTAGTGGAAGAAAATTTCTGCAGGA AAGAAATTGATAGTGAACAACCTTCAATTTCACCTTTGGCAAGGGAAGATGTAGTAGTATCAACTAACTCTTGCACAAAT TCTCCTCTGGGTAACAACTCTTTCCCTTCTGTGATAAAGGCATCTAGTCCTCAAAGTTCAAGCAATGTCTCAAAGGGATG CTATAGTCCAGTTAGGCTTCTATGTACTTTAGGAGAAGAGCATCTTGAAAGAGGTAAGGATGGAATGATGAACCCGCCGA CTCCACCATTTATACATAGAGAAGCTCCTTAG
Protein sequence (LotjaGi6g1v0082200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSVDNGIGIGNLKDEIEESNGTPVNDFASLNLSTSRETFQSCSENPHRSSLSSLLDKMKFVKFCSASAKFKQPVKDQIS QSASSPLSDSLKSRFSSVFSRKLDWGSIKKMSLEWIRNPMNMALFVWIICVAVSGAILFLVMTGMLNAVLPSKSQRNAWF EVNNQILNALFTLMCLYQHPKRFHHLVLLFRWRPNDISRLRNVYSKNGTHKPHEWAHMMVVVILLHLNCFSQYALCGLNL GYKRAERPAIGVGICVSFAIGAPAIAGLYAILSPLGKDYDCEMDEEAQVKKYSFASKDQQRVIEKKPNWSGGVLDIWNDI SLSYLSLFCTFCVFGWNMERLGFGNMYVHIATFMLLCMAPFWIFVLASVNIDDDNVRQAIVAVGIVLCFFGLLYGGFWRI RMRKRFNLPVYDFCFGKPSVSDCTLWLCCCWCSLAQEARTGNNYNLVEENFCRKEIDSEQPSISPLAREDVVVSTNSCTN SPLGNNSFPSVIKASSPQSSSNVSKGCYSPVRLLCTLGEEHLERGKDGMMNPPTPPFIHREAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 123 | 123 | - | – | |
| PANTHER | 1 | 540 | 540 | 4.3E-275 | – | |
| PANTHER | 1 | 540 | 540 | 4.3E-275 | – | |
| Pfam | 114 | 192 | 79 | 2.0E-29 | ||
| Phobius | 124 | 150 | 27 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 151 | 214 | 64 | - | – | |
| Phobius | 215 | 238 | 24 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 239 | 249 | 11 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 250 | 272 | 23 | - | – | |
| Phobius | 273 | 315 | 43 | - | – | |
| TIGRFAM | 308 | 440 | 133 | 2.8E-28 | ||
| Pfam | 309 | 439 | 131 | 1.6E-18 | ||
| Phobius | 316 | 336 | 21 | - | – | |
| TMHMM | 320 | 337 | 18 | - | – | |
| Phobius | 337 | 347 | 11 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 348 | 367 | 20 | - | – | |
| Phobius | 368 | 378 | 11 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 379 | 398 | 20 | - | – | |
| Phobius | 399 | 543 | 145 | - | – | |
| MobiDBLite | 524 | 543 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0082200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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