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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0082300 |
| Transcript ID | LotjaGi6g1v0082300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-soluble NSF attachment protein; TAIR: AT3G56190.1 alpha-soluble NSF attachment protein 2; Swiss-Prot: sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein; TrEMBL-Plants: tr|I3T1G7|I3T1G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0082300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:15881454..15885891) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGATCAGTTATCGAAGGCGGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGTTGGGGCTTGTTTGGTTC CAAATATGAAGACGCTTCTGATCTCTTCGATAAAGCTGCCAATTCCTTCAAGCTCGCCAAATCATGTATTTTCCATTTTC CCCCTTTTTGCAATTGAATTTATTGTTGTTGTTGTTGTGTCCAGTTTCCGATTCGAAATGCTTCATTTTTAGTGAAATAA ATTGTTAGGATGATTTTTAATTGATTAATTAGTTGCGAGAAGTTCGAAAAATGGAATTTAGTGAAATGGGTTGGAATTGT TTTTGTTGTTGATGTTGTTTGTGATTTGATCTTGTTGTATTTTAGGGGACAAAGCGGGATCGACATACCTAAGGCTGGCA AGTTGTCATTTGAAGGTAAAGGGCGCGATTTTGAGTTTTGCGAGTGTGGTTTTATCTTGCTTTATGAGCATGGAATGACA TTGTGGTGTTATGTTTGTAGTTGGAAAGTAAACATGAAGCTGCACAGGCTTATGTTGATGCTGCACATTGCTATAAAAAG ACTAACATAAAAGGTATGCATGTAGCGGTTATATGCTCTAGAACTTTGTTTTCTTGTTGGTAATGTAGTTACTTTATTTT GAACTTACTACTGTGTTGATTGTTGAACTCCTATGCAAAGCAACTTCTGTGTTGCATTAACATAAGGTTTGAAGTAAATA TTAGTACTTATAGTCTCCACACTCATTTGGGTTTCTATTCATCTAAGCAAATGTTTCTTATTTTGCATACAGGATTGGTC CTTGTAGGTTAACTTATTAAGTGATTACTTTATGATGGATCAAATTCTTAGAGATATATGAAACTATAGGGATCTATAAC CAAGAAAATTAAGTTGTAGCGACCAAAACTGAAATGAGTGTAAAGTATATACTGTTGAGACCAAAATCTACCTTAAATGT AAATTCATTAATGTTATTGGCATCGATCATCTGCTGTGCACTCCAAGTGAAAATGACAGTTGCTGTGAATTCATTATCCT TTCATTCTCTTTTTTGGATATTATTTCTCACTTATAATTTCTGCTTTAAATGCTGCTCTAGCCTTCATGCAGCTAGGCTA ATTTCTTTTAGCGTTAATATTTCTGTGATGATTTTAATTCAAATCAGGGAAAGCCATTGCCTCCCTTTTGCATGATCAAA TGATATAAGAAATCCTTATGTTATTTCATTATTTGAGCTTTCCCTATGTTTAAATAAGCTGTAAGCAGGGATTCATACTT TTGTCTAGATTTGTTTTACTCAATAATCAAGATATAGAAATTAATTTGCGCAAGTTTAAGTTGTTGACAATTGAGTTCCA TCTGATTCTTTTCTTTAATGGCTGTCTCAGTGTCATATTTTGATTTGTTACTTGCTGACTATTATATTAGTATATTCAAT TTCTTGATTATGTAGCTTAGCTGGAAATGCCTGGAAAGAAATATAAAGCATTTCTGATGTCATGTTCTTTCTTCTCTCTA TGAATACAGAGGCTGTATCTTGCTTAGACCATGCTGTAAATATTTTCTGTGATATTGGTAGACTCTCTATGGCTGCTAGA TATTTGAAGGTATATCACTGTATCTTTAACGTTATGTTTCAGCATAATTTATATTAATGATGGCTTGGATGGCATATTTG GTTATCTTTAGTATCCCTTCTATTGGATATCATGTTTTCGTTACCCTTTATTGCAGTTTCTGGCTTTTGATTGTTGTTTA ATTAACTATATTGAAGTATAAAACGGTACTGGAATCTCTGTGAACATGTCATAACTGGGTTTCACTTTTACACACACAGG AAATTGCTGAGTTACATGAGTCTGAACAAAACATTGAGCAGGCGGTTGTTTACTTTGAAAAAGCAGCTGATTTTTTTCAA AATGAAGAAGTGACAACTTCTGCGAATCAGTGCAAGCAAAAAGTTGCCCAATTTGCTGCTCAGCTAGAGCAGTAAGATTT TCTACTTTCTGCATATTTATCTCTCTAATTATCCTGATAGCTTGCATGGTTCCATGCCACTCTACCTCCCAGATTAACAT TTGCTCAGGTTACAGTAGATTGTTTGACTTCAAGAATCTTTATCTTAACAGAAGTCTAGTATATTTTTTTCTGCAATCCA TATTATGTTGACTTGTATGCATGGTCTTAACAAAAGTTTGTCCATTGATGCATTTAGTTTGTAATATGCTAGGGTAATAC CTGTGCAATGCAGGAAATAATTAAAATTTAGGGTCTGAAATAACAGTGATACTCATTTGTAACAGTGATACTTATTTGTA GTAATGTACACTATATTTGGTAAAGAATGCCTGTAATATTGCAAATATAAGAGATAGATTATAAAATGCTGTGGACTTTT GTTTTGTGTACTGCAATATGCCATATATAATCAAAGACGGCCACTCAAACTATAGGATAACTAATTATAAGAACGAAAAA ATATGCTTGAATATAAATGATTTAGAGTGCAGTAAAAAGTATAACGAAAACAGCTTATATATGTTTCAAGAGGTACATAC AAAGCTTAAGAAAGGAATAAATATTCAGCTGTTACATATTTGGTTGGACATTTGTGTATGATGTGCTCTAGTTGGGGCAG TAGCTACAAAAGAAATCCAGTCCATATTTTCCTTTTGCTTTATGTTAAACTGAATATTAATCGTTTCACTTTTATGATAA CTCTTCAGATATCAGAAGTCTATTGAGATTTATGAAGAGATAGCTCGCCAATCTCTTAGCAATAATTTGCTGAAGTACGG AGTGAAAGGCCATCTCCTTAATGCTGGCATTTGCCAACTCTGTAAAGGCGATGTTGTTGCCATATCCAATGCATTAGAGA GATATCAGGTCTATAAGACTTTTCAACAATTCACATATTGAGATTGATCATCTCACTAGTTGCTCAAGTCTTTGGATATA TCTTTTTTTTTGCAGGAATTAGATCCGACATTTTCGGGAACACGTGAATATAGATTATTGGCGGTAGGTCAATATTTTGA ATTTTCATTTTGAATTTTTAAAGACCAAATTAATTGGATCATTATATTTGGACTTTTCAATTGCTCCTGCACTACCATAA TGTTTTATTAAAGTGTGGTATTGATTATATCATTGTGAGTATTTTATTGTCTGGTTACTTATATTTTCCGGATGAAATAC ATTTTTTTCTGAGTAGGATATTGCTGCTGCACTTGATGAAGAAGATGTTGTGAAGTTTACTGATGTTGTCAAGGATTTTG ATAGCATGACCCCTCTGGTAAGCTCCAAAAAATTTAATTTGGAATCAACATTTCCTATGTAGTTCGAATTTAACAATACA ATTCTAATGTAGCTTTCATCCACATTTTATAACAGAATAAGCATAACTTTTCATCATTGAAATCTTCGTTTTGTGGCCAG TTAAATAGAAACGTTTTCATTAACTTGTGGATGTTTGGAAATTTCCCCTGAAATTAAAGTTCTATTTGATTACCTAGATT GAAATTTTTATGTTCTGTTGCTTTTCAGTAAGAATTATTTATCTGAATTTCAAGCAGTCTTGTTTGAATGCTAAAATAAT GTCACAAAAAATGGTTTGATTTGACGCATGTCAGCATGGTTATGCTTAGAAACATTTGGTGTTTTGGTCATTTTGGAACA TTTCAACTTTAACAATTAAAAGAGATGGATTGCCGCAGATTGCTTCTTTAGTAGGTCTGAGTTTGGTCAGATATTCATCT GGTGCTTGCCTGTTGGATGTTGGTTCTTTTCTATGTTAAAAGAAAACCATGAAAATATTATTTCTGTATCTTATCTTCTA TGTTATCCTTCCAGTGCTTTGTAAGTATTCTTGAGCGTTTATGCTCCCTGGAGACGATGTTGTGTTTTCTTTTTCCCTCA TGTACCTTGCTCAATTCCTGTAACGATTACTATCTATCTTTTGGTTTAAAGAAGTTGCATATAGGTTAAAAAATAACCAT TGCGTCTGAAATACTGGCTCTTGTGCCCTTGTTTTCTGTATACAAGGCATACTTATTAACTGGTCTGAATTAGTTTAGAA TTGTTGTGACTTAAAAGTCTGACCTTGGGGCTTGGGGTAAATCTTCAGTACTCCCATAGTTCTGAAGACTGAGTTTTTAA GAATTTAAATTTAAAATTTTAAAAACCATGGATAACTAACCATACATGGCCACATGGGTATGTATCATAATGTGTGGAAG TAGTACCGAAGACTCCATCCTCTAGAATTACTGAAAATATTTCCTTTACTTTGTGATATTTTCCCCTCTTCGTATTCCAT GAGTAGCTTTATCCACATTGCCCCTTTGCTTGTGCAGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGC TGAAAGCCAAAGAGCTTGAGGAGGATGATCTTACTTAA
CDS sequence (LotjaGi6g1v0082300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGATCAGTTATCGAAGGCGGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGTTGGGGCTTGTTTGGTTC CAAATATGAAGACGCTTCTGATCTCTTCGATAAAGCTGCCAATTCCTTCAAGCTCGCCAAATCATGGGACAAAGCGGGAT CGACATACCTAAGGCTGGCAAGTTGTCATTTGAAGTTGGAAAGTAAACATGAAGCTGCACAGGCTTATGTTGATGCTGCA CATTGCTATAAAAAGACTAACATAAAAGAGGCTGTATCTTGCTTAGACCATGCTGTAAATATTTTCTGTGATATTGGTAG ACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTACATGAGTCTGAACAAAACATTGAGCAGGCGGTTGTTT ACTTTGAAAAAGCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCGAATCAGTGCAAGCAAAAAGTTGCCCAA TTTGCTGCTCAGCTAGAGCAATATCAGAAGTCTATTGAGATTTATGAAGAGATAGCTCGCCAATCTCTTAGCAATAATTT GCTGAAGTACGGAGTGAAAGGCCATCTCCTTAATGCTGGCATTTGCCAACTCTGTAAAGGCGATGTTGTTGCCATATCCA ATGCATTAGAGAGATATCAGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAGCTT GAGGAGGATGATCTTACTTAA
Protein sequence (LotjaGi6g1v0082300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQLSKAEEFEKKAEKKLNGWGLFGSKYEDASDLFDKAANSFKLAKSWDKAGSTYLRLASCHLKLESKHEAAQAYVDAA HCYKKTNIKEAVSCLDHAVNIFCDIGRLSMAARYLKEIAELHESEQNIEQAVVYFEKAADFFQNEEVTTSANQCKQKVAQ FAAQLEQYQKSIEIYEEIARQSLSNNLLKYGVKGHLLNAGICQLCKGDVVAISNALERYQDSWKTTLLLRVKEKLKAKEL EEDDLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 221 | 221 | 2.2E-143 | – | |
| PANTHER | 1 | 221 | 221 | 2.2E-143 | ||
| Gene3D | 5 | 222 | 218 | 2.7E-78 | ||
| Pfam | 6 | 221 | 216 | 4.5E-85 | – | |
| SUPERFAMILY | 6 | 237 | 232 | 2.47E-55 | ||
| CDD | 23 | 235 | 213 | 1.70052E-89 | ||
| PRINTS | 28 | 47 | 20 | 9.7E-27 | ||
| SMART | 53 | 86 | 34 | 92.0 | ||
| PRINTS | 91 | 108 | 18 | 9.7E-27 | ||
| Coils | 111 | 131 | 21 | - | – | |
| SMART | 112 | 145 | 34 | 0.37 | ||
| Coils | 151 | 178 | 28 | - | – | |
| PRINTS | 152 | 175 | 24 | 9.7E-27 | ||
| PRINTS | 183 | 202 | 20 | 9.7E-27 | ||
| PANTHER | 221 | 246 | 26 | 2.2E-143 | ||
| PANTHER | 221 | 246 | 26 | 2.2E-143 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi6g1v0082300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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