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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0082800 |
| Transcript ID | LotjaGi6g1v0082800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain protein; TAIR: AT3G56230.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9LYL9|Y3623_ARATH BTB/POZ domain-containing protein At3g56230; TrEMBL-Plants: tr|G7J2Y2|G7J2Y2_MEDTR BTB/POZ domain protein; Found in the gene: LotjaGi6g1v0082800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16144632..16148865) extracted from Lotus japonicus Gifu genome v1.2.
TCCTTCTTTACATACTTTCCTCCACTTCTTTATTATACAATAATCATGAAACAGAAAAGGATTGCACATCTACAAATTGT TATGAGGTTACATCCACCCTATCATTCACTTTAAACTATAAAATATACATAGAGCTAATGATGTATCTCTTCTAATAAAA TTAAATAGACATGAGACTGGAATCATTTATAATAGGGTCCAATTAAAGGAACATATTTTATGAGGAATGAACGTGGATGG CAACTATTTATGGATAGCAAGGTCAGAACTTAGAAGAAGCAAGTGTCTCCTTCATCTCCTTCTTCATCTTTCTGTGATTT TAGAGAGCAGAGGAGGGAAATTAACTAAGGGGCAGAGACATGGATTGTTGTGTCTGCACAACCATGCCATTGATATTAAG GCCTCCAAGGAATACAATATGCGGGTCTTGTTATGAAGGGGTTAGGAGTATAATCGATATTATGCACAATCTCGAAAGTG AGAAGGCAAAAGCAATCACCAACCCAAACGATTCTCCAGTTTCAAAGCGAAATTCTAGTAAGGCAAGCTATAATTCTTTT CATAATTCATATGCCTGATATTTCATAAAAAATTATGTAGAGTTCATGTTTCCTCTCTCTCTCTGGCTCCCATGTTTGCA TAATATCTTGCTTATTTTTAGTAATTTATATAATAACCAATGTGCCTCATGTAGTTGATTACGTTTTACAATTGGCATCA CTAACTAGTAATTTTGTTCTACAAGTCATGTTTGCTCCTTAGATCGGAATCGAATTGTTTATTAGTGTATTAAATTGTTC TCACAATTTTGAGTCACGTAGGATTACTTTGAGCGGCAAAACTCAGGGCTCGTTTGGCACGCCGTATTAGGCATGATAGT ATAAGCTTATACAATACATTATGAGTTTATTCATTGTTTGGTGATGACATTGTATTGTATAAGCTTATCCATCAAAGTCC CTTTATACGTTAAAATGACGTATTATTTAATCCATCATGTGAGTGATGAACAAGGCATGATAAGGTTGTGACGTATAAGT CACCATCACCACCACCCTCCATTGCTACCAACTTACACCATCATTGGCCCCACCGCCGCCACCGGTGTTGCCGCCACCAC CCGATCACCACCGCCGCCGCCACCACCGCCCTACCGTAACCCCTGGTGTTGCCGCCACCACCACCACCGACACCACAACC ACCACCCTATCGCCACAACCACCACCATTGCCTCCACCGTCGTCGCCACCCTACTGCAGCCGCCACCGCCACCGCCTTAC CACCACCACCCTATCGTCGCCAACACCACAACCACCATCGCCGCCACCACCCGATCACCACCAACGCCCTACCGCCACCA CCGACACCACAACCACCAACCTATCGCCACCACCACCATAATCGTCGCCACCACTCTATTGCCACCACCGCCACCACCGA TACCACAACCACCACCCTATCGCCACCACCACCACCATTACCTCCACCCTCCACCGTAGCCGCCACCCTATCACAACGGC CACCGCCTTACCACCACCACCACCACCCTATCATCGCCACCACCACAACAATCATCGCTGCCACCACAACCACCAACCTA TCTCCACTGTCACCACCACCGCCACCAACACCAACCTACCACCATTGCCACCACCACCACCAACCTACCACCACTTCCAT CACAACCGCCAACACCGTTATAATCACCTCCATATTCGATTTTTATTATATATCATTATTCAATACTTCACTAAACATAA AATTGCATTAATTTAAACGATATGGTAAATTATACAGAGTATGGCCAAACGCTAGATAGTATAAGAAAGTTATCAGGGCT TATACTATCAGGTCTAATACTATCAGGTCTTATACTATCAGGCTTTATACTATACGTCGCACCAAACGGACCCTCAATCT ACGAAGTATTTATCTATGCTTAAGTTAAACAATCTCGTCTCAGTTAATCTAGGCACTTTATCTGCCACATTAGCTGCTAA ATAATGGAGATAGTCTTACATAGATAAAATAATTATATTTAATCTAATTTTGCATCCCTCCATTATATTTCTAACTTCGA AAATCAAACTTGTTCTGTGGTTTCTCATAGATAAGATTTTAAGGCATGATTTGACCTTTTACGGTCACATATATTAATCT TAATCTGCTTACAAGTCTATTTAACAGAAAATGTCATTTTAAAAAGATAAATAAATCAGCGGGCAATGGGTCGCTTTTAT ATTTGTTGTATCCTGTTAAGTTTTGCTGTTACCCTGTTATATTTGCTTTCAATTGAGTTCAGACACACATGCTTCCCCTG TTATATGTTGCTATTGCTGGTGTAGCTTAGCTATATATAACTGAATTGGCAATGGCAGAACTATTAATTGTATGGATACT TTTGTTTGAATTATTTGTTTTCTTTCAAATTCAGTTGTGGCTCAATTTGTATGGATATGGCAGAGTGCTACCTTTCCATT GATTGTGATTAAAAAAATGCCTTTGGATGCTATGGCATTAATAAGATATTTTTCCTCCATAGGCCATTGAGGATAATGCA AGACGGTGGTTTGATCATATAAACCTCTGTAATCAACAAAAAGAAGAGTTGGCTTTCCTCAGAGGCTTTGTTGCTGCATT CAAGGAACAGATTCACACTGATATACTGGTCAATCCAGGCAACAATGGTCCACCTATACCTGCACATAAATCCGTTTTGG TGAGTTATTTTTGTTTTGCCCACTAAATATTTTCCATAATTATTAAAACAATAAAGATTGGTGGGCGTACACGGTACACC ACTAGAGAGTTAAGAAAAGAGGAAAGATAAGTGATAAATGTGATACATTATGAATTGATCGAAAAAATGAGAGGGGGAGA AAATGTGTTCCACATTGTTTGCATTGTTTTGTGGTACAAGTATCATTACTCAAGTTAAAATCATTCATAAAGTTTTTGGG GGTGTGAACTTACAACCTCATACAACAAAATCATTCCAAAATCATTGGTGATAGGTTGCTAAGGAAACTTTTAACTACAA TAGCCTTAATTAAATTTTTGGTCCTATAGTTTCATAAAACGTGATTTTAGTTTTTTATTTTCAATTGCTCAAATTAAGTT TCTCTTCTTTCAAAATTAAACAAATTTGGTTCAATTGTAATGAAAAAATTGACATGTATCACTTTTTTTTTATCCACATA AATCGTCTTATATTGTAATTCATGTAAATAATTTGTGATGGACATCTACTTTTTTTCATTTTTTTCCTTAATTATTGGAT GATAATTTAACGTTTGAACTCAATTTGTTCAATTTTAGAAGTAAAGAGATTTAATTTGAGCAGCTGAGGCTAATGACCAA AGTCACAAATTTCTAAAATTATGAGGACTAAAAGTTAATTAAGCCTTTGAAATATGAATTAATTAATTCTTGTTTCATGT AAAATTATATATGCATAATTCTAACGAGGCTATATACACATGTTATTCTGTTGTAGGCAGCGAGATCAGAAATTTTCAAG AACATGCTAGAATGTGACCAATGCAAAGCTTCACCTAATAATAACACCATAACAATACCCGATTTGAACCATGATGAACT AGAGTCTCTCTTGGAGTTTCTGTACAGTGGAACCATGGCTTCAGAAAAATTGGAGAAACATGTGTATGCATTGTCACAAG CAGCTGATAAGTATGATATCCCACACTTGCTCAAAAAGTGTGAGATATATCTGCTAAGTTCACTTAGCACCTCTAATGCA CTTGAAACGCTAGAGATTGCTGATACTTGTTCTAACAACAAGTTGAAGGAGACAACCTTGGATTTCTTAGTTAAGAACAT TGAGCATGTCGTGTCCTCCGCTAAATTTGAAGCTTTTGTACATCGGAGTCCGCAGTTAACTGTGGAGCTAGTTACTAGGG CATTTGTGAACGGTGCCAAATCATCAATATCTCCCCAAGTTTAAAGAGGCACGATTATTTAATTCTTTCAATTTCGTATG TATTTATCAAGACCTATTGATTGAGATCTTCAACAAGTACAAAGTAATTCATACTTTGATCTCTTTTGTAACCAGATCTC CCATTTTATTTTCTTTTGAGTTGTAGTTTCAATTAGGGTGCGCTTGTATAAAATTTAATTAAACGCTTGATTATGTCAAT AATCCCCTATCATGTAAGCATGTGTTTATAAGTTCTATTTAACAAATTGAAATAAGCTTTTAGTTTATTTTGTG
CDS sequence (LotjaGi6g1v0082800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGTTGTGTCTGCACAACCATGCCATTGATATTAAGGCCTCCAAGGAATACAATATGCGGGTCTTGTTATGAAGG GGTTAGGAGTATAATCGATATTATGCACAATCTCGAAAGTGAGAAGGCAAAAGCAATCACCAACCCAAACGATTCTCCAG TTTCAAAGCGAAATTCTAGTAAGGCCATTGAGGATAATGCAAGACGGTGGTTTGATCATATAAACCTCTGTAATCAACAA AAAGAAGAGTTGGCTTTCCTCAGAGGCTTTGTTGCTGCATTCAAGGAACAGATTCACACTGATATACTGGTCAATCCAGG CAACAATGGTCCACCTATACCTGCACATAAATCCGTTTTGGCAGCGAGATCAGAAATTTTCAAGAACATGCTAGAATGTG ACCAATGCAAAGCTTCACCTAATAATAACACCATAACAATACCCGATTTGAACCATGATGAACTAGAGTCTCTCTTGGAG TTTCTGTACAGTGGAACCATGGCTTCAGAAAAATTGGAGAAACATGTGTATGCATTGTCACAAGCAGCTGATAAGTATGA TATCCCACACTTGCTCAAAAAGTGTGAGATATATCTGCTAAGTTCACTTAGCACCTCTAATGCACTTGAAACGCTAGAGA TTGCTGATACTTGTTCTAACAACAAGTTGAAGGAGACAACCTTGGATTTCTTAGTTAAGAACATTGAGCATGTCGTGTCC TCCGCTAAATTTGAAGCTTTTGTACATCGGAGTCCGCAGTTAACTGTGGAGCTAGTTACTAGGGCATTTGTGAACGGTGC CAAATCATCAATATCTCCCCAAGTTTAA
Protein sequence (LotjaGi6g1v0082800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCCVCTTMPLILRPPRNTICGSCYEGVRSIIDIMHNLESEKAKAITNPNDSPVSKRNSSKAIEDNARRWFDHINLCNQQ KEELAFLRGFVAAFKEQIHTDILVNPGNNGPPIPAHKSVLAARSEIFKNMLECDQCKASPNNNTITIPDLNHDELESLLE FLYSGTMASEKLEKHVYALSQAADKYDIPHLLKKCEIYLLSSLSTSNALETLEIADTCSNNKLKETTLDFLVKNIEHVVS SAKFEAFVHRSPQLTVELVTRAFVNGAKSSISPQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 268 | 268 | 9.1E-97 | – | |
| PANTHER | 1 | 268 | 268 | 9.1E-97 | – | |
| Gene3D | 72 | 204 | 133 | 2.0E-22 | – | |
| SUPERFAMILY | 86 | 202 | 117 | 4.71E-20 | ||
| Pfam | 94 | 202 | 109 | 2.8E-21 | ||
| CDD | 99 | 186 | 88 | 4.39846E-17 | – | |
| ProSiteProfiles | 100 | 171 | 72 | 16.569 | ||
| SMART | 100 | 203 | 104 | 9.0E-19 | ||
| CDD | 203 | 273 | 71 | 1.96785E-5 | – | |
| Gene3D | 205 | 273 | 69 | 1.8E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0082800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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