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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0083500 |
| Transcript ID | LotjaGi6g1v0083500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uroporphyrinogen decarboxylase; TAIR: AT2G40490.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic; TrEMBL-Plants: tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi6g1v0083500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16373936..16376884) extracted from Lotus japonicus Gifu genome v1.2.
ACAGTTGCTGAACCAAAATTAACAGCTGCTGCTGAACCACTATTGCTTAATGCAGTTCGTGGGCTAGATGTTGAAAGGCC CCCAGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGGCAGGTTTTTGAAGTTACTTGTTATGGTTTCAGTTCCGCA TTTGGGAATCCTATCATTGTTGAAGAAGACTAACTTAATCCTAATTATAGAATTAGTTCTCGTATAGGTCTTTGGCTTTG TATCTATTGTTTCATTTAGGTTTTTCCCTGTGGTCGAGGGTGGTTTTTTGTTGTGGTTAGGAGGTTGTGTTTTCCTGTGG ATGGTTGGGGATTTTTGTTTTTGTTATCCTCTTTGTCTGCCTATTTTTGCCAGGTCTATACTTTCTATCCCTTCCCTTGA CCTCTTTATCAAAAAAATTGGATTTCCAAAAAAAAGACATTTTGAACATCCAAGTTTGGTGAATTTTCTCAATATTCTTT GGAAGTTAGTAGTTAGTGTTCTGAATTACTTTCTTGTTCTAACCAATATGAAAGACTGAAATTGAATCTTTTTCACTTGT GCTGTTGGAGTGTGTTGCTTTATGAAAAGGAAATTGGTATAAATAGATATTTTTTTTTAGGCTCTGTCTCTTTTAATCTT TCATTTTGTCTGAAGCTAAAGATAGCTAAGGGAATGTTTAACATTTTCCAATCCGTATCTCCATTTCAGAATTTTTTCAA GAGTGTTTTTTCAGACTGAATTCGGTCCAAGTATTTGTTTGAATTGTCACAAACCATATCTGGTTGCATCACTTTTAAAT TTTACTTTCCTGTTTTAAATGCCACCAAGCATCAAATGGGTTGGTCTTTTATCCTTCATGATTGAGTTTAGTAATTAGGA GTATGTTTATTTACTGAAAGTATATCTAACTTTCCGAACCTTATTATTTACCAGAGTTACCAAACCATCTGTGAGAAACA TCCTTCATTCCGTGAAAGGTCTGAAAATGTCGATCTTGTGGTGGAAATTTCATTGCAACCATGGAAGGTTTTCAAGCCTG ATGGGGTAAGATATGTCTCTGTCACTCATTTATATATTTATGCTTGCTGCAATATTTTGTTATCTAACTTCTTCGGGTAT GGCTCTGATTTTGTTGTTGTTAATAATTTTCCTGGATGGTACGGATTCTGTAACAGGTGATTTTATTCTCCGATATTCTT ACCCCACTTTCTGGGATGAATATACCCTTTGATATTGTCAAGGGTAAGGGTCCGGTCATATTTGATCCCATTCACTCAGC TGCCCAGGTTGATCAAGTGACGGAGTTTATTCCTCAAGGTTCAGTTCCATACGTTGGTGAAGCACTTACTATCTTGAGGA AAGAGGTATGACTTATCTCATGTTGCTATGCATTCTTTTTTTCTTCGTTCATACCATACTTCCTTTTACAGCTAAAGCCT CTTTGTAGTAAAATACCATAAAACATGAAATTATTTAGATCAGTTAAATGGTATTCTTCATTTTACAACCATAGGTGGAG CCTTTACATGGACTAATGAAAAAAGCGAGGCATATCTTATGTGGAACCGGACCTGAGGGAACATATAATCTTGAAAACTT GCAGAACTATCTATTTTATCAAATTGTCCATCCTGCTGGTTGTTGTGAATATAATATGAGTTGATCTTCTACCCCCTGTT GTATTCAAAAGCTGTTTTATGTTGTAGACAAATGGCGGAGCTTCAGATAGACTCTAACTATCTTGCTTCTATATTTCTAA TTATTGTTGCTTTATTGTTATTCTTTATGGCCAATGTATAATGCCCTAAGGTCTATTATCTTATTGAATTTAAAAAGTAT TGATTTCAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTTGGTGCTCCGTTCACCCTGGCATCATATGTGGTTGAAGG TGGTTCATCAAAACACTTCTCAAAAATAAAGAGATTGGCTTTCTCTCAACCCAAGGTAATCTTCAACCATCTTTCCCCAT TAGATGCAATTAACTTGTCCCCAAGGCAACCTACGGATGTGCTTAAATATTTTTAGTTTTACTCAGCATTTTGAAACCTG AAATGCACTGATGAGACCACATAACCAGTGACTTAAGCTGGCCATTTGATTAGAAAGTTATTCAGTTGAATTGGAAAACA GTAGCATTGGATCATTCATATTACCATAACTGGTTAGGGTAATTTTTGTGTGTGTACTGTACATCAATGGAACAACTTGA ACTATTGATCTTATCATAAAACAGTTAGCATGGTTCATGTTAACCAATCCTTTTTTTCCTTATTATTATTTGATTTTGAG AAACATATATATTTATCCTGTTATGCTTTCAACTTCATGGTGGAAACAAGTTCAGGATTATTTCTTTAACTCATTACTCC CATTTACTTCATTGAACTGTGATTCGTCCACAGGTTCTGCATTCATTACTGCAGAAGTTTACAACGTCAATGGCGAGATA CATTCAATACCAAGCTGATAATGGAGCTCAAGCTGTTCAGATCTTTGACTCATGGGCGACAGAGCTAAGTCCAGTGGATT TCGAAGAGTTCAGTTTGCCTTACTTGAAGCAGATCGTTGATACCGTGAAAAAAACCCACCCAGAACTCCCTCTGATCCTC TATGCAAGTGGCTCTGGAGGCTTGCTCGAGAGACTAGCTTTGACAGGTGTGGATGTTGTTAGCTTGGATTGGACGGTTGA TATGGCTGATGGTAGGAGAAGACTAGGACCGAATATAACTGTCCAAGGTAACGTGGATCCTGGTGTTCTTTTCGGTTCAA AAGAGATCATCACTGATAGAATACATGATACTGTGAGAAAAGCAGGCAGAGGGAAACATATCTTGAATCTTGGTCATGGC ATTGTAGTAGGTACACCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCTAAAGGAATCAGATACTAA
CDS sequence (LotjaGi6g1v0083500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCAAGTTACCAAACCATCTGTGAGAAACATCCTTCATTCCGTGAAAGGTCTGAAAATGTCGATCTTGTGGTGGA AATTTCATTGCAACCATGGAAGGTTTTCAAGCCTGATGGGGTGATTTTATTCTCCGATATTCTTACCCCACTTTCTGGGA TGAATATACCCTTTGATATTGTCAAGGGTAAGGGTCCGGTCATATTTGATCCCATTCACTCAGCTGCCCAGGTTGATCAA GTGACGGAGTTTATTCCTCAAGGTTCAGTTCCATACGTTGGTGAAGCACTTACTATCTTGAGGAAAGAGGTGGATAATAA AGCTGCAGTCCTTGGTTTTGTTGGTGCTCCGTTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCATCAAAACACTTCT CAAAAATAAAGAGATTGGCTTTCTCTCAACCCAAGGTTCTGCATTCATTACTGCAGAAGTTTACAACGTCAATGGCGAGA TACATTCAATACCAAGCTGATAATGGAGCTCAAGCTGTTCAGATCTTTGACTCATGGGCGACAGAGCTAAGTCCAGTGGA TTTCGAAGAGTTCAGTTTGCCTTACTTGAAGCAGATCGTTGATACCGTGAAAAAAACCCACCCAGAACTCCCTCTGATCC TCTATGCAAGTGGCTCTGGAGGCTTGCTCGAGAGACTAGCTTTGACAGGTGTGGATGTTGTTAGCTTGGATTGGACGGTT GATATGGCTGATGGTAGGAGAAGACTAGGACCGAATATAACTGTCCAAGGTAACGTGGATCCTGGTGTTCTTTTCGGTTC AAAAGAGATCATCACTGATAGAATACATGATACTGTGAGAAAAGCAGGCAGAGGGAAACATATCTTGAATCTTGGTCATG GCATTGTAGTAGGTACACCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCTAAAGGAATCAGATACTAA
Protein sequence (LotjaGi6g1v0083500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSYQTICEKHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHSAAQVDQ VTEFIPQGSVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHSLLQKFTTSMAR YIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKKTHPELPLILYASGSGGLLERLALTGVDVVSLDWTV DMADGRRRLGPNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEVAKGIRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 316 | 316 | 1.6E-131 | ||
| PANTHER | 3 | 316 | 314 | 4.1E-160 | – | |
| PANTHER | 3 | 316 | 314 | 4.1E-160 | – | |
| TIGRFAM | 3 | 312 | 310 | 1.5E-112 | ||
| CDD | 4 | 312 | 309 | 3.28403E-158 | ||
| Pfam | 5 | 312 | 308 | 1.2E-102 | ||
| SUPERFAMILY | 5 | 315 | 311 | 1.29E-91 | ||
| ProSitePatterns | 111 | 127 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Uroporphyrinogen decarboxylase activity | Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2. | ||
| Biological process | Porphyrin-containing compound biosynthetic process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. |
Expression pattern of LotjaGi6g1v0083500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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