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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0084300 |
| Transcript ID | LotjaGi6g1v0084300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT5G10030.1 TGACG motif-binding factor 4; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|Q93XA2|Q93XA2_PHAVU TGA-type basic leucine zipper protein TGA1.1; Found in the gene: LotjaGi6g1v0084300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16527669..16530740) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATTCACCATCCGCGCAGTTTGTTTCCTCGAGAAGGATGAGCGTTTACGATCCGATCCACCAGATTAGTATGTGGGG AGAAAGCTTCAAAAGTAATGGTAATTTAAGTGCACAAATCCCCTTAATTGATGAGGCAGACATGAAGTTTGATAGTCAGG TGCAATTTTACAAATTCTATGGTTTTGTTGCATTGGAAAATGGGAATCCCTATTCTGTCTATTAAGTACTAACTATTTTT TCTGTTTGATGCATAGTCAGAGGATGCTTCTTTTGATATACTGGGAACATCTAACAACTATGAACAAGAAGCTAACAGAC CTATTGATAAGGTAAGAGCATGATATGCAACCCATTGCATATATTCCATATGCAGGTATTTGTGCTTTACAATTTCTAGT TGATTTCCAAGGTTATAAATTGGGGTTGCAGTTACGCCGTGATCCTTGATATTGTGGAAAATTACGGACAAATGTGGCTG CAATTGCGGTCTAGATGAGGTTCGGGTGAACCAAAGACATTGCAGGCGCAATTGCAGTTGCAAACCGAAATTTGAAACAT GTTTTATTTGAGTGGGAAATTTGTTTAGCAACCGCTTTCATTCTATATGTTGCCATTTCTAAGTTTAATGTGATCCATTC AAATCATTTAAAATTATGGACAGAATCATTGGGGATATTTTAGCCCAGGAAATCACACCTTATTCACTTTTCTTTTTCCC TCCATGTTCTGCTTTGAAGCATCTGTATTCAGCGCACATTTCCATGCTTCCAAATTTTGTGGTTTTGGCATTTCCTCATG GTTATTTTATCACAATAATGGTAGAAAATGAGGATCTGACATGATGAAACATGCAGATACAAAGACGTCTCGCACAAAAT CGAGAGGCTGCTCGTAAGAGCCGTCTGCGGAAAAAGGTATGAATGATCACACATTGATAAATATGATAGACGCGCAATTA CTGGTTAGATATACTGATGGTTCAAGTTATTAATTTCTGATTTTTCCTTCCAGGCCTATGTTCAGCAGCTAGAATCAAGT CGTTTGAAATTGATGCAGTTGGAGCAAGAGCTTGATCGTGCAAGACATCAGGTGCGTGCGGTGAAGATGAGTTATTATAC TTGTAGCTTCTCTTGTGGATCATATTATGTTTCAGTATCTTCTTTCATTTCGCTCGCTCTTTAATTTCTTGTGTCAACAA TACTGCAGGGAATGTATATAGGTGGTGGTGGATTGGATTCTAATAACATGGGTTTTGCAGGATGTGCAAATTCAGGTTGG TTTTTTAATTATGCTGCTACTGTGAGATAGCATTGAACTTGAGTTTTCCTTGTCTTGGTAATTAATATTTTCATTCTTGT TTTTTCAACCTTGACTAAATCCGTTTGCTTTCATCGTTATCACTTCTGATAATGGAAAAGCAGCTACTTCTTCAAAACAG AAAAAAAAGTCCCGTTTTCTGTTTTGCTGATTGGATAACAAATGGTCTCAGTGGACAGCTAAAATATTGTTTAGCATCTG TCATATGAAAATATTGAATTATGTTTTCTCTTAGTTCCATAGAAACTTTTTTGTTCCAAATCTTAACCAATTTTAGAGAT AATATTCATTCTTTTTCCTCCAAGTATCCAGAAATTTAAGCCTGGTCTGTGCTTATAGGCAGAGTAAAAAAAATATTGTT CTTGTCTTTCTTTGAGCATCCTATCTTCTTGCATTATACTCTTTTTTCCAATTTGTTCTTCTTGCACTCTAAGGATAGCC TATTTTTCAGGAATTACAACCTTTGAGATGGAGTATGGAAATTGGGTGGAGGAACAAAGTAGGCGAATCACAGAAATGAG AGGTGCTTTAAATGCTCATATTGGTGACATGGAGCTTAGGATTCTGGTAGATGGCATGATGAACCACTATGCCGAAATCT TCCGCATGAAATCCGCTGCTGCAAAAGCAGATGTTTTCTATGTAATGTCTGGTATGTGGAAAACAACAGCCGAAAGATTT TTCTTGTGGATTGGAGGCTTTCGCCCCTCCGAGCTTCTAAAGGTGATGATGACTCAGATTATTTTTTAATGAAACTAGTT GATTAACTTGAGACTATTTCTAGATTGAGCTCTTGTCTCTTTGATTCGTAGCTCTGAAGAAAAAACTTGAGACTAGTTCT ATTGCCATATTCAACTTCGGCATGACAATTTTTTGAGTGTTTGATTGCAGGTTCTTGCCCCTATGATTGAACCCTTGACC GAGCAACAACGGTTGGATATTGAGAACCTTGGACAATCATGTCAACAAGCAGAGGATGCCCTGTCACAAGGTATGGTTAA ACTCCGGCAAACGCTAGCCGATAGTGTAGCGGCTGGACAATATGTTGAAGTTCCGCAGATGACTTCTGCCTTGGAGAAGT TGGAAGCTCTTGTGAGCTTTGTCAACCAGGTAATATAGGATCAAATTAGAAAAATAGAAAGAAAAAAAGGTTTACAGTGC CTTAAATATCATTATTTCGAGTCATGAAATAGGACCAGAAGTGGTAGTTGGTTATGCAAAATGTTCCTTGCTGCCATTAA TCATAAATCAATTTCATACCAAAACTAGCAGTTTTACATATTTCTCTCTATATCGCACACTAGAGGAATTTATCTGGTTT TTGAATATGTAGGTTCATGCATAATTTGAAAAGTATTTTTATTTTCAATCACTAGTTCTTAATGAGGATGCTGGATTTGA AATACTCATTCTAAACAATGCTGTGACTTTTGATTCACTTGAAGACCTTTTACTTTACAACTTCTGATCACAATGTGTCG GTTTGATTTACTGTTATAAAAGTAAAGTATGAAAACAGAAAAAATAACACATCCTGACACACTTTTTGTTGAAGTATAGT GTGGCTATTAGAGATTTAACCGTGTTTTATGTACAACAGGCTGATCATCTTCGGCAAGAAACCTTGCTGCAATTGTCGCG AATACTTACAATCCGCCAATCAGCTCGATGCTTACTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTAAGCTCAC TATGGTCGAATCGACCCCGTGAACCTGCTTAG
CDS sequence (LotjaGi6g1v0084300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCACCATCCGCGCAGTTTGTTTCCTCGAGAAGGATGAGCGTTTACGATCCGATCCACCAGATTAGTATGTGGGG AGAAAGCTTCAAAAGTAATGGTAATTTAAGTGCACAAATCCCCTTAATTGATGAGGCAGACATGAAGTTTGATAGTCAGT CAGAGGATGCTTCTTTTGATATACTGGGAACATCTAACAACTATGAACAAGAAGCTAACAGACCTATTGATAAGATACAA AGACGTCTCGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTCTGCGGAAAAAGGCCTATGTTCAGCAGCTAGAATCAAG TCGTTTGAAATTGATGCAGTTGGAGCAAGAGCTTGATCGTGCAAGACATCAGGGAATGTATATAGGTGGTGGTGGATTGG ATTCTAATAACATGGGTTTTGCAGGATGTGCAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGAAATTGGGTGGAG GAACAAAGTAGGCGAATCACAGAAATGAGAGGTGCTTTAAATGCTCATATTGGTGACATGGAGCTTAGGATTCTGGTAGA TGGCATGATGAACCACTATGCCGAAATCTTCCGCATGAAATCCGCTGCTGCAAAAGCAGATGTTTTCTATGTAATGTCTG GTATGTGGAAAACAACAGCCGAAAGATTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCCGAGCTTCTAAAGGTTCTTGCC CCTATGATTGAACCCTTGACCGAGCAACAACGGTTGGATATTGAGAACCTTGGACAATCATGTCAACAAGCAGAGGATGC CCTGTCACAAGGTATGGTTAAACTCCGGCAAACGCTAGCCGATAGTGTAGCGGCTGGACAATATGTTGAAGTTCCGCAGA TGACTTCTGCCTTGGAGAAGTTGGAAGCTCTTGTGAGCTTTGTCAACCAGGCTGATCATCTTCGGCAAGAAACCTTGCTG CAATTGTCGCGAATACTTACAATCCGCCAATCAGCTCGATGCTTACTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGC TTTAAGCTCACTATGGTCGAATCGACCCCGTGAACCTGCTTAG
Protein sequence (LotjaGi6g1v0084300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSPSAQFVSSRRMSVYDPIHQISMWGESFKSNGNLSAQIPLIDEADMKFDSQSEDASFDILGTSNNYEQEANRPIDKIQ RRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELDRARHQGMYIGGGGLDSNNMGFAGCANSGITTFEMEYGNWVE EQSRRITEMRGALNAHIGDMELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLA PMIEPLTEQQRLDIENLGQSCQQAEDALSQGMVKLRQTLADSVAAGQYVEVPQMTSALEKLEALVSFVNQADHLRQETLL QLSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 360 | 360 | 4.5E-175 | – | |
| PANTHER | 1 | 360 | 360 | 4.5E-175 | – | |
| SMART | 74 | 139 | 66 | 1.1E-4 | ||
| ProSiteProfiles | 76 | 118 | 43 | 8.783 | ||
| Gene3D | 78 | 126 | 49 | 6.5E-10 | – | |
| SUPERFAMILY | 78 | 117 | 40 | 5.63E-7 | – | |
| Pfam | 78 | 110 | 33 | 2.3E-8 | ||
| ProSitePatterns | 81 | 96 | 16 | - | ||
| Coils | 97 | 124 | 28 | - | – | |
| ProSiteProfiles | 148 | 355 | 208 | 32.003 | ||
| Pfam | 166 | 240 | 75 | 5.3E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0084300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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