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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0084800 |
| Transcript ID | LotjaGi6g1v0084800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulation of nuclear pre-mRNA domain-containing protein 1B; TAIR: AT5G10060.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B; TrEMBL-Plants: tr|K7LRU4|K7LRU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0084800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16842826..16849306) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAACCCAATTTTCATGAACCCACCCCAACCCTTACATCCAAACATGTTACTGCGGAATACCGATACTAGATTCACCC CGCGCCGTTTAGACAAGTTCCCATGTTTGCGCCAAATACCCAACCCTTAACTTAAACCTCTGCATGTAACGCATCTTTCT TCTTCTTCTTCAATTAGGGTTTTTTCAAATCTGAAACACCTACAATCCCTGTTTTCCAATTTGCCCCAAGTGCCTTTGTG AATTGTGATTATCACTGATTTCATGCTCTGCATTCGCTTAATTATGCGGCATTCGTTGATTTTTCGATAACACTTCAATT TTCCCTCTTTGATTTTTCTTTTCTTTTTGGCCAATTGGCTATTGGTACTGATATTGATGCAGTTCCGTTCTAGGGTTTCT GTGTTCGTAGATTGAGGCGTTTTTCGATTAGTTAGATTTACAGGGGATAGGGTTTGTGGTGAGGTGAGGGTAAAGAGTTG AACATGAATGGCGTTTTCAGCGATCAGATACTTGCGGATAAGCTTTCCAAGCTTAATAACACCCAGCAGTGCATTGAAAG TATCCTTTTTGTTTTCTATTACTTGATTAACGATGCTTTATTTTTTCTCTGTATTTGGGGATTCCAGATTTTACCCTGGA ATCAAAGTAATCTTCATGATTATTGGGCTTAATTTTTTGTTTTTTGTGTTACTGATAGTGCCAATTTTTTACGTTGTTCG TAGCTGAATTGTCGCAGTGTGTTTTGGGGGGTTGGGAGTTTTCCTGATTATATGTATTCTAGTTTATTGAAATTAAAATG CAATATATGTACAAAATGCTTACCACGATTATTGGTATGGGATATATGTGCTAGGATGGCAGTAGGGAATTGAAATGTGT AGTCTGAGGTTGTTATTATCCTTAACTTTCTGATATAGCTTTATCACATTGGTGTATATTTCACCGGAGCAAAGCTGAAC TGGTTGTTGCAACATGGAAAAAACAATTTGACATATCGGAGATGGCTCAAAGAGTACCCCTTTTGTATCTTGCAAATGAC ATCCTGCAGAACAGCAAGCGTAAAGGAAATGAGTTTGTGAATGAGTTCTGGAAGGTTCTTCCTGAAGCACTAAAAGATGT TATTGAAAAAAATGATGATCAAGGAAAACGTGTGGTGTCTAGACTGGTAAGCCCCTTTTTCAGTTTTTGGTGTAAGTATT TCAAGTGAAATCAATAAATGGTAAAGGGTGGGGCAGAGTTTTAAATTGAGGTTGTGGTAACTGTCGATCCCATTAAGGTT GTGTTGCGGTCATTCGTATCGCGAAAAATTGTAATAAATGTAGTTGTCGCGGCCGAAATCAGTTACGGTCATGTCGCAGT TTTGGTTAAAACCATACGGGGGTGGGGGTGAATGATTCAAATATGCAGTTTGTTTCAGATAGTTGTTTATGCTGATTGGA ATTGGTATAAAGAAGATAGAATGCTTCTTGGTATTCAAGAGACCAGCACTCTCCCACTCTAGATCCTTTTCTGAAACCAA AGAAGATCCTCACTAATTGCCTTCTCTTATTAAAAACCTCTCATTTCTAAATCCCCAAACTGACTATTCTAACTAACTTT ATCTATTACCAATTCTCTCTAACTAACTAACTAACTAACTAACTAACTAAGTAAGTAACTGGCCATGGAGTTACCTATCA CATGCATTTGCTGAAACTTAAGACATGGCTGGCATATACATGCTGATCATATGATTTGCATACCTTGATATTGATTTTAA CTTGGTTCTTACATTGCGTTAGTTTGAAGTATGGGAGCAAAGAAAGGTGTTCGGATCTCAGGCAAGGAACCTTAAAGATC TAATGCTTGGAGAAAAAGCACCTCCACCATTGGAAATCAGCAAAAAGCGATCACGTTCTGTAAGAATTGTGAAAAGGGAT TCTCGATCCATCAAATTGGTGAGACTCAGTAACTCCAGGCCTTTGTGACTTCACTTCTTCCTCTTCCCATTTTTGTACCT ATCATTTTATTGATGCTAGATTATGGCATCTTTCAAAGTGGTTTGTTATGCTTTTTTCATATCTCACTTATATGATATAT GATATTTTATTGGTGCCAGAAATTGTCCATAGGAGGTACAGAAGAAAAAATAGTGTCTGCATTTCATTTGGTGCTCAGTG AACAATCCATTGAAGATGCAGAAATGGGTAGATGCAAGTCAGCTGTTCAACGTGTGAAGAAAATTGAAAAAGATGTTGAT ATTGCGTGCTCTAGTGGTATGCATACAATAGAATAGAAGCAACATCTGAATTTTGGAGGATAGGTTTCTAATATTGCTTT CTTTTTCAGCTAAGGATCCTAAGCGAAAAACTTTGGCTAGGGAGCTAGAAGAGGAAGAGAATCTTTTGAAACAATGCATA GAAAAACTTAAATTAGCTGAAGCAAATAGAGTAGCACTTGTATCTCAGTTGAAAGTAGCGTTGCTTGAGCAGGTACATTA TAATGCCCATGTGCTTGAGAAATCTATTATTTTCTTTCTTCAGGTGTTTAGATTTTGGCTGTTTGGTTGTTCCTAACTTC ATCTTCTTTCTATTGCTCGTGAATGTTTGTATTAGGAATCTGAACTGGAGAATGTTCGTACACAAATGCAGGTATGTATT ACTAATGAATGATTCTTTTTCACATAAAGCTGTCATTTTTTGACAGTCATATGGTATGAGAATTGAGAAGTGTTATGCAT TAATGATTTAGGTATCTCAATATCTCATGATTTAGTTACTTCCCTAGTGATACCTCTTCTACAAATACTACTAAGAAGTT CTGATTTGGCATATTGTGAAGTCACTTCGCTGCTTGATGTTTGTGTTGGTGGTTGTAAAACATTATCTAGGATAAATCAC ACTGATCCGACCTCCCTTGAAGTTTGTGAAACCTATTCAAAGTCACAAAACCCCCCTTACAGTTTTATTATTTCCTTTTC AGGGGATTAATTGTCTCCGACATTTAAACGGGAGGGGATGCTTTGCCTGATGAAAATTTAAATAGGGGAGGTCAGTGTAA TAAGCTATATTTATAAAAGAAAAAAGCAATTTCCATTGGAAAATCACTTAGTGAAAGAACCACCACACCAATATGGAGTA ATGGATTCTTGTTATGAGTGTTGGTTATTACTTATTGCGTCTGCTTTCATAAGGTTGGAACTTGGATGTGTTTTATCTAA TAACAATGCTAATGAATTTGGACTTTATGCTTATATATCTTATTAATGATTAATGATATCTAGGTTGCTCAAGCACAAGT AGAAGAGGCCAGCAACATGCGGGAGCGACTTGATAATGAAGGTTCTTCACAGAAAGCTTCCACTGCAGCTCCTAATGCAA ATGGAAAATCAGAAGCAGCAACCAAAAAGTCAGCTGCAGCAATTGCTGCGGAGGTTGCGGATAAGCTTGCGGCTTCTTCA TCATCTCAAATGATCATGACTTCTGTTCTCTCATCATTTGCAGCAGAAGAGGCAAAAAGTGCTCGTCTAACGTCTGATTC TAGATCAACACATGAGAAATCAATGCCTACTCCAGATCCCCATTTCTATATGTCTGCGCAACAGTTGGCAGCGGCACCAA ACCATTCATATCCTTCAGTTTTGGTAACCCAACCAATCATGCAAAATCCAGCCCCTGCGTCCCAAGGTCAATACCACATG CTTTGCAATCCATCATCACAGCAATACATGCAGTCAACAGGAGGGGGCATCTCTCCATATGGTTATGGCAGCATCTCATC ATTACCACCCCAACCTCATGTAGTCGGGGCAATGGCGCCGCCTTTGACACATCAGACACAGCAAATAATACAGCATCAAC CATTATCAATACCACAGCAAGCTCCAGCAGCTCCTAGTTTTCGACCACTTCAGCCACCAGGAATGGTGTACTATGCAACT CATCAGCATCCTATATGAGACCTGCACTAGGTAGAGTGTGTTCAAAGTGACCCTTACTGAAACAAGGGAATTCTGGAGGT TTGAAATTTTATTTTATGCCAATGATATGCTGTGACCGGAGGTGAAATTGCCAGATTTTGCAATAATGTTTAAGGAAACT AGCCTGCCGCAGAATCTAAAAATGAAGTCTGTCCCTAAGTGAACAGGGATCTCGAATGGACAAGGCATTGATTTCAAATG AATTGGACAAAAACCTATAGAATAAATTAGCAAGAACAATGTAAACAAAGATTTTGACTAACCTTTTAAATTAATATCAT ATATTTGACTTCTCAAATGATTCGTCGATCGTATCCCAAAACTATTTTGTGCATTTTCGAATAAACGTTGGAAAATTGCT GTGAACTAAAAGACTGAAGTCATGGATAAAAGCAAGTTTCTTAGCCGTGAATTTCAGTGGTTAATTAACCCTTGATTTTA TAAAGAAATTCTGACAAGGATTTTAAGGTTTTCACTTCATGGCTTCATGGAATGACTGGCTAGCAGATTTTGGGGAGCAT AGTCCTTGCACTACTTCATAAATGGGTTGAGACTCCATTGCATTTTCCAATACAATTTTCTGTTTGTACTTTGTATAGAA CATGAACACGGGGTACAGTGCCTGAGTGCCAATATCTTTTTTTTATGAGTTTTCATCCTCCTTTTTATCCAGTTTTTGAA AATTTCAGTGGAAGAAAGCATTAACGGTCGTAGAAACGCACAGTTTCATTTTCATTATTGTTTTGAAATACTGCCTTTCT TTGAGTAGATTTGCCTTTCTTTGAGTAGATTTGTGTTTTTATTGGAACTTAAGAGGACTAGTCACAGGAGGTTGTTGTCC AGGACCTCAAACTAAGACGTATCTTGCCGTTGTAATTCGTTCCTATCATAAATCAAGATCACAAGATGTAATTTGTAATT CAATCCTGTGCAACATGCATAACAATCATTTTTATTTTATTTCTTAAACTAACGGTTGCAGGAAAAATAGATGATATAAG TTTACATAATGGTAAAGCTAGCCAGATTTCCACTAAAAAATCTGTCCTGTGTTCATCGGTGTTTTGTTAGTTTGAGATGG GCACCAAAACCAATGTACTTCTATGCAAAAGTCACACTTTTGTAATTTTTATTATAATTGATATTGGAATTTAAATTGAT TTGCAAAAGCCAAACTAAACACACTTCATAAACCCTAGCAAGACATTCATCAACAATATCTCCTGCTAAACTGGGAATGT CTTAACAGATTGTCCAACAATACTATGTGCAAAAGTTGGGTACATCCAGCTGTAGCTCAACACTTCATTATTTTCTTCAA AATAAAGTCTCTAACACAGATTGGTAAATGGTACATGATAGCCATGGCGGTTGAGTAAGGCCCATAGGAGAACCATGCAG GTGGGTTCTTCTTGAGGATGACAGCTACAGTGTTTTTAGCAAACATATCTGCAGGGGTTGTCCTGCTCCTCTGAGAAAAA TTGGCTCGCTCTCTAATTCTCGCTTCAAAAGGCTTGAATAACTCCAACTCAGGCATGCGATCGTACCTGGCTAAGGCAGA ATTTCCAATGTTTGACTTGATAGCACCAGGGACAACATTGACAACATCAATTCCAAAGAGTGCAAGTTCCAATCTGTGCA TGACATGTGCATGTTGTTGAGCAGAAAATAAAAAAAACTGGTTGACTCCAGGCACCACATCTCAAATGGTGTCTTGTTGC ATCTACTAAATTTTAACTTCAGTACAGTATATACAAATCTAGTGCAGTGCTTAACACACTCCACTACATTCCAGTTTCAT CAAATTACCACTTTGATTTAAAAGCATGCACATAACATTGAAACAATATCTATTAACCAAGGTGAATTTCTATTGCCAAC ACTGTTGCTTCTAGTTGATTTGATGCAGATATGAACAAGTCTAATGGTAATGCATGTTTGAATTTGAAGAAGAAAAAAAA CCTTAATGTATCTGTCAAAGCATGAAGAGCAGCTTTAGAAGCAGAGTAAGCGCCTGACCAAGGTCCAGAAGCAAGAGCAG AAACACTACCAACGTTCACAATCTTTCCTTGTTTCCTAGTTGCCATGTGAGGAACAACAGCCTGAACCATCCTCAAGGAA CCTGCATGTGTCCAATGAAATACAGAATCTCGTTAAACGTGCAGTTCATCGTCATGAATACTAGATAGACAGCAGGCAAG AGTGACTTAAGTTAAGATTCTTTCCATCACAGATTCATTCAGAATAATTAATTTTAAAAGTGTAACTGGCAAAAAGTGCT TCTGATAGCTTGTCTAGATTCGCTTTTGTTCCTCCCAGAATCACTTCTCCCCACTAAGGCCCCGTTTGGAAGAGCTTATT TGAGCTTATCTGATAGCATGTTTGGATCAGGCTATGTCATAATTGATGTGGACAAAATGGATTTAGTGAAAATTAATTAA GGTAAAAGTAAGTTGAAAGTGAAGTGATGTGGGATACATTTATAAGAGAAGTGATTTCTATAGGGTAAGTTTTTTAAATT C
CDS sequence (LotjaGi6g1v0084800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGGCGTTTTCAGCGATCAGATACTTGCGGATAAGCTTTCCAAGCTTAATAACACCCAGCAGTGCATTGAAACTTT ATCACATTGGTGTATATTTCACCGGAGCAAAGCTGAACTGGTTGTTGCAACATGGAAAAAACAATTTGACATATCGGAGA TGGCTCAAAGAGTACCCCTTTTGTATCTTGCAAATGACATCCTGCAGAACAGCAAGCGTAAAGGAAATGAGTTTGTGAAT GAGTTCTGGAAGGTTCTTCCTGAAGCACTAAAAGATGTTATTGAAAAAAATGATGATCAAGGAAAACGTGTGGTGTCTAG ACTGTTTGAAGTATGGGAGCAAAGAAAGGTGTTCGGATCTCAGGCAAGGAACCTTAAAGATCTAATGCTTGGAGAAAAAG CACCTCCACCATTGGAAATCAGCAAAAAGCGATCACGTTCTGTAAGAATTGTGAAAAGGGATTCTCGATCCATCAAATTG AAATTGTCCATAGGAGGTACAGAAGAAAAAATAGTGTCTGCATTTCATTTGGTGCTCAGTGAACAATCCATTGAAGATGC AGAAATGGGTAGATGCAAGTCAGCTGTTCAACGTGTGAAGAAAATTGAAAAAGATGTTGATATTGCGTGCTCTAGTGCTA AGGATCCTAAGCGAAAAACTTTGGCTAGGGAGCTAGAAGAGGAAGAGAATCTTTTGAAACAATGCATAGAAAAACTTAAA TTAGCTGAAGCAAATAGAGTAGCACTTGTATCTCAGTTGAAAGTAGCGTTGCTTGAGCAGGAATCTGAACTGGAGAATGT TCGTACACAAATGCAGGTTGCTCAAGCACAAGTAGAAGAGGCCAGCAACATGCGGGAGCGACTTGATAATGAAGGTTCTT CACAGAAAGCTTCCACTGCAGCTCCTAATGCAAATGGAAAATCAGAAGCAGCAACCAAAAAGTCAGCTGCAGCAATTGCT GCGGAGGTTGCGGATAAGCTTGCGGCTTCTTCATCATCTCAAATGATCATGACTTCTGTTCTCTCATCATTTGCAGCAGA AGAGGCAAAAAGTGCTCGTCTAACGTCTGATTCTAGATCAACACATGAGAAATCAATGCCTACTCCAGATCCCCATTTCT ATATGTCTGCGCAACAGTTGGCAGCGGCACCAAACCATTCATATCCTTCAGTTTTGGTAACCCAACCAATCATGCAAAAT CCAGCCCCTGCGTCCCAAGGTCAATACCACATGCTTTGCAATCCATCATCACAGCAATACATGCAGTCAACAGGAGGGGG CATCTCTCCATATGGTTATGGCAGCATCTCATCATTACCACCCCAACCTCATGTAGTCGGGGCAATGGCGCCGCCTTTGA CACATCAGACACAGCAAATAATACAGCATCAACCATTATCAATACCACAGCAAGCTCCAGCAGCTCCTAGTTTTCGACCA CTTCAGCCACCAGGAATGGTGTACTATGCAACTCATCAGCATCCTATATGA
Protein sequence (LotjaGi6g1v0084800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGVFSDQILADKLSKLNNTQQCIETLSHWCIFHRSKAELVVATWKKQFDISEMAQRVPLLYLANDILQNSKRKGNEFVN EFWKVLPEALKDVIEKNDDQGKRVVSRLFEVWEQRKVFGSQARNLKDLMLGEKAPPPLEISKKRSRSVRIVKRDSRSIKL KLSIGGTEEKIVSAFHLVLSEQSIEDAEMGRCKSAVQRVKKIEKDVDIACSSAKDPKRKTLARELEEEENLLKQCIEKLK LAEANRVALVSQLKVALLEQESELENVRTQMQVAQAQVEEASNMRERLDNEGSSQKASTAAPNANGKSEAATKKSAAAIA AEVADKLAASSSSQMIMTSVLSSFAAEEAKSARLTSDSRSTHEKSMPTPDPHFYMSAQQLAAAPNHSYPSVLVTQPIMQN PAPASQGQYHMLCNPSSQQYMQSTGGGISPYGYGSISSLPPQPHVVGAMAPPLTHQTQQIIQHQPLSIPQQAPAAPSFRP LQPPGMVYYATHQHPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 134 | 133 | 41.532 | ||
| Gene3D | 3 | 130 | 128 | 3.1E-33 | ||
| PANTHER | 3 | 484 | 482 | 2.5E-144 | – | |
| CDD | 8 | 120 | 113 | 1.98417E-54 | – | |
| SUPERFAMILY | 9 | 120 | 112 | 1.27E-16 | ||
| SMART | 9 | 131 | 123 | 3.6E-39 | ||
| Pfam | 57 | 118 | 62 | 4.9E-20 | ||
| Coils | 218 | 245 | 28 | - | – | |
| Coils | 250 | 291 | 42 | - | – | |
| MobiDBLite | 275 | 310 | 36 | - | – | |
| MobiDBLite | 293 | 310 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0084800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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