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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0086500 |
| Transcript ID | LotjaGi6g1v0086500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipoxygenase domain-containing 1; TAIR: AT2G22170.1 Lipase/lipooxygenase, PLAT/LH2 family protein; Swiss-Prot: sp|Q9SIE7|PLAT2_ARATH PLAT domain-containing protein 2; TrEMBL-Plants: tr|I3T7H1|I3T7H1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0086500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:17438970..17440365) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATTGATAATAATTATCTTATATGAAAAAAAAGTAAATATAATTAACTCAATCAATCAATAATGTGATGTGATGATT TGCTTTATCTTATCTTCTAGAGTTAGCGGATTTGCAAACTCTTATGTTGAAGGTAACTGAAATGATTCTTAAGTAGCTAG AAATTAAAGAAATTGACAATAACATTTTTCCAAAACTAAGAATAAAAAGGAAAATAATTATATACCCAAACATCACCAAT TCATAATTCCCCATCCACCCTGCACCTGTGCACCACATGGCCCTCCTTTATTTATGAACAAAGAGACCTGTAACACTGTA TCCATCACTGAACAACAAATTAAACTCACTTTCTTCACCAAATACTCCATCTCATGGCAATCAAACTGAGGTTCCTCGCT CTCCTCCTTCTCCTCTCGCTATTCTCCCTCGGAACCGTCACATCGGTAATTTCGTAATCTCACTCTTAATCATCATCTCT ATGTTGTTTGTTTGTTTGTTCCAGCTGAAAAACAACAAAATGAAAATTGTACTTTTTTCACTAGGACGAAGAAGATTGCG TGTACACAGTGTACGTTCGAACCGGGTCGATCATCAAGGGGGGAACAGACTCAATAATCGGGCTCAAACTATACGACAAA TACGGCTACTACATATACATAACAAACTTGGAAGCATGGGGCGGGTTAATGGAACCGGGTCACAACTACTACGAGCGTGG CAACCTGGATATATTCAGTGGAAGAGGGCCTTGTCTTGAAGGATCCGTTTGTGCTGTCAACTTGACTTCAGACGGGTCGG GTCCTCATCATGGGTGGTACTGTAACTACGTGGAGGTTACCACCACCGGGGTGCACTTACCGTGTGCTCAGCAGCAGTTC ACGGTGGAGCAGTGGCTGGCTACCGACACTTCACCTTATCGCCTATGGGCTGTCAATAATTACTGTAATAATGACTTGGG CCAGGCCCGGCCCAAGCCCATGTATAAGCCCATGTCCACATCTATGATTACGTCGAGGACTGGTTCTGGTTTCTCTATTT TGGACTCTACTGTCCTTGTAGGGACAGATAAGTAATTTACTAGGTTCTCATGAGTCATATGATAGTGTTGCTGGGGATTA TTTTGGTGTGTTGTGTGTTTAGTTATTTACTATGCAGGGATAGTGTCTGTCCTCCATGGTATTGTTCGATATCGCCTAAG CTGAATTGAATACCGGGTTCCTATCAAGAACCCTGTTTGTATTATTATAAGTATGGAATAAAATTTGGGCATTTGGCACC TATTGTGTGGTGTTTTGGACGTTTGGGTAGGTGTTGTGAAAATGATACCTGCGGTGTGTGTCCACACCCTGGCCTTAAAA AATATTGCTTCATTTAATAATTCCTAATTTTGATTT
CDS sequence (LotjaGi6g1v0086500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCAAACTGAGGTTCCTCGCTCTCCTCCTTCTCCTCTCGCTATTCTCCCTCGGAACCGTCACATCGGACGAAGA AGATTGCGTGTACACAGTGTACGTTCGAACCGGGTCGATCATCAAGGGGGGAACAGACTCAATAATCGGGCTCAAACTAT ACGACAAATACGGCTACTACATATACATAACAAACTTGGAAGCATGGGGCGGGTTAATGGAACCGGGTCACAACTACTAC GAGCGTGGCAACCTGGATATATTCAGTGGAAGAGGGCCTTGTCTTGAAGGATCCGTTTGTGCTGTCAACTTGACTTCAGA CGGGTCGGGTCCTCATCATGGGTGGTACTGTAACTACGTGGAGGTTACCACCACCGGGGTGCACTTACCGTGTGCTCAGC AGCAGTTCACGGTGGAGCAGTGGCTGGCTACCGACACTTCACCTTATCGCCTATGGGCTGTCAATAATTACTGTAATAAT GACTTGGGCCAGGCCCGGCCCAAGCCCATGTATAAGCCCATGTCCACATCTATGATTACGTCGAGGACTGGTTCTGGTTT CTCTATTTTGGACTCTACTGTCCTTGTAGGGACAGATAAGTAA
Protein sequence (LotjaGi6g1v0086500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIKLRFLALLLLLSLFSLGTVTSDEEDCVYTVYVRTGSIIKGGTDSIIGLKLYDKYGYYIYITNLEAWGGLMEPGHNYY ERGNLDIFSGRGPCLEGSVCAVNLTSDGSGPHHGWYCNYVEVTTTGVHLPCAQQQFTVEQWLATDTSPYRLWAVNNYCNN DLGQARPKPMYKPMSTSMITSRTGSGFSILDSTVLVGTDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 192 | 191 | 4.7E-92 | – | |
| PANTHER | 2 | 192 | 191 | 4.7E-92 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Gene3D | 24 | 149 | 126 | 8.9E-16 | – | |
| Phobius | 25 | 200 | 176 | - | – | |
| CDD | 29 | 156 | 128 | 1.55907E-76 | – | |
| ProSiteProfiles | 29 | 156 | 128 | 22.625 | ||
| SUPERFAMILY | 30 | 147 | 118 | 1.01E-25 | ||
| Pfam | 31 | 148 | 118 | 1.4E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0086500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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