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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0087100 |
| Transcript ID | LotjaGi6g1v0087100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Extracellular matrix-binding protein ebh; TAIR: AT4G39840.1 cell wall integrity/stress response component-like protein; Swiss-Prot: sp|A7X2C5|EBHB_STAA1 Extracellular matrix-binding protein EbhB; TrEMBL-Plants: tr|I1MYS9|I1MYS9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0087100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:17598134..17600153) extracted from Lotus japonicus Gifu genome v1.2.
ACCTTCCATTTTTCTATTTTAGATATTATTAAATTCAAAATTAATTGTGAGTTAACAAAATGAAGGGATGTGATTGAATG ATGGTGTAAAACTTATTTACAAATGTGTTAAAAAACATGTTTAATGAAACTTCCTAATTTTTTGAAGTCTTTGTCGGTTA TACTGTACTGTGATTTGTATATCATTATTGTTTAACTAATACCATACCCTCATTCATTATGATCCATAAACTAAGAGCAG AAACTATATATAAAAGTAAAACCATTCACACCGCAGTTCCTTATTATCTCTCTCTTCCCATGTTGATATTATAAATTCGC GGGTTGTTAGGCTCAGGACCAATCTCTATTTGCGTGCATATCTAGATTTTCTACCACCTGCCTCTTTAGATCTTAGAGGA AATTGTGTTGAGTGTGTACCTTGCTTTCACAAAATGGCTCCAAAGGTGCTACTTCTCTCTGTTCTCTTGTTCCTTTTCGT TTCTGTTTGCTTCAGTTCCTGCTCTGAACCTCAACTAGGAAGCAAACACTTGTCAAGAAGTAGCAGAAGAATGCTGGAGG AGGAGGATTCTGAAAATGAACAAGAGTTTGAGCAACCACTGAAGAAGAAACCAACCAAACCAATCACCACCAATCTTTCC TCCAAAAACCAAACCAAATCCATCAAATCCAATAACAACAACCTCTCCTCCAAAAACCAAACCAAAACCACCCTCAACGC CTCCACCTTCAAGAAACTCAATTCCACTTCCATCAAGATCAAGAAGCTAAACAACTCCACATCAAAATCCTTCACTAATT CCTCAAAAACCAGCACCACCAGCAAGAAACAATTGGATCTCACCAAGCTAGCAGGCGCAATCGCCAAGAACAAAACAACA AAAGCAACCACCGCCACCGACACAAAGAACAAGATCAAGGTAAATCCAGGTCATATTGAAGAAGAAAAGCTGAATAAACA GAGCAATAAGAAAAAACAATCACCACCCAATTGGATGTTTGAAGATGAAGATTCTGATTTGGTTTCAGACTTCAAAGATC TACCAATCAGGTTTCAGAAATCATTGATCCCGGACCTGGAACGAATCTCAACAACTTCAAAGTCTTACTTCACAAGAGCC AACAAGGAATTCACAAAAGGATTCAAACCTTACGTTGGTAACAAATACGCACCCACCATTGCAACTTTGCTATCATGTGC ATTCGTTCTGATCCCATTGCTTTTAGCTTCTCTTGTTTTGAACAAGATCAAAGCCTATTTCTCACTTCAGAAGCTCTTGC TCTTCATCCAAGCTTACCTCTCTATCTACTTCTCAATCCTCTGCCTCTCTTCTTTTGTTACCGGGCTTGAGCCGCTGAGG TTTTTCTTCTCTACTTCGCAGTCGAGTTATCTCTTCCTGCAGGTTATCCAAACGCTAGCTTATGTTCTCTACCTTCTCTT GCTTCTCATGTACCTTGTTTTGGTTTTCTCCACGGACTCTGGGCTAGGCTCGAAGTTTTTGGGCCTAACCCAAACGTTCG TGGGGTTTGCTGTCGGGTTACATTATTACATGACGGTGTTTCACAGGGTGGTGTTGCGGCAACCGCCCAAGACCAATTGG AAGGTTCACGGGATTTACGCCACGTGTTTCTTCGTGATTTGTGTCCTTGCTGGGGCGGATAGAAGGAAGAAGAGTTACTT GGAAGAAGGTGGAGAAGAAGGGAAGAAAAATTAGCTAGCTCAATAGTTAGTTACATTTTAGTTCCTCTCCTTATTTCATC ATTTTGACTAAAAGAAAAAATTATCCAAAGCAACATACAAAGCTTGTTCATGTGATGTAATGCCGCAAGGCTAGCTATGG CTTTTCAGCCAGAAAGCATTCAAATTCATTTCATAAATAAGTGGAATTCGGGACATATAACAATTGTATGATTCATCATT TTGTAAGTCTCATATTGTAGCACTTCATCACTTCCTCAATTCAATTTCTGGGCTATTGATTTCACTGTTCTCTTTAATAT ATACTACATTTTAATGTCAT
CDS sequence (LotjaGi6g1v0087100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAAAGGTGCTACTTCTCTCTGTTCTCTTGTTCCTTTTCGTTTCTGTTTGCTTCAGTTCCTGCTCTGAACCTCA ACTAGGAAGCAAACACTTGTCAAGAAGTAGCAGAAGAATGCTGGAGGAGGAGGATTCTGAAAATGAACAAGAGTTTGAGC AACCACTGAAGAAGAAACCAACCAAACCAATCACCACCAATCTTTCCTCCAAAAACCAAACCAAATCCATCAAATCCAAT AACAACAACCTCTCCTCCAAAAACCAAACCAAAACCACCCTCAACGCCTCCACCTTCAAGAAACTCAATTCCACTTCCAT CAAGATCAAGAAGCTAAACAACTCCACATCAAAATCCTTCACTAATTCCTCAAAAACCAGCACCACCAGCAAGAAACAAT TGGATCTCACCAAGCTAGCAGGCGCAATCGCCAAGAACAAAACAACAAAAGCAACCACCGCCACCGACACAAAGAACAAG ATCAAGGTAAATCCAGGTCATATTGAAGAAGAAAAGCTGAATAAACAGAGCAATAAGAAAAAACAATCACCACCCAATTG GATGTTTGAAGATGAAGATTCTGATTTGGTTTCAGACTTCAAAGATCTACCAATCAGGTTTCAGAAATCATTGATCCCGG ACCTGGAACGAATCTCAACAACTTCAAAGTCTTACTTCACAAGAGCCAACAAGGAATTCACAAAAGGATTCAAACCTTAC GTTGGTAACAAATACGCACCCACCATTGCAACTTTGCTATCATGTGCATTCGTTCTGATCCCATTGCTTTTAGCTTCTCT TGTTTTGAACAAGATCAAAGCCTATTTCTCACTTCAGAAGCTCTTGCTCTTCATCCAAGCTTACCTCTCTATCTACTTCT CAATCCTCTGCCTCTCTTCTTTTGTTACCGGGCTTGAGCCGCTGAGGTTTTTCTTCTCTACTTCGCAGTCGAGTTATCTC TTCCTGCAGGTTATCCAAACGCTAGCTTATGTTCTCTACCTTCTCTTGCTTCTCATGTACCTTGTTTTGGTTTTCTCCAC GGACTCTGGGCTAGGCTCGAAGTTTTTGGGCCTAACCCAAACGTTCGTGGGGTTTGCTGTCGGGTTACATTATTACATGA CGGTGTTTCACAGGGTGGTGTTGCGGCAACCGCCCAAGACCAATTGGAAGGTTCACGGGATTTACGCCACGTGTTTCTTC GTGATTTGTGTCCTTGCTGGGGCGGATAGAAGGAAGAAGAGTTACTTGGAAGAAGGTGGAGAAGAAGGGAAGAAAAATTA G
Protein sequence (LotjaGi6g1v0087100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKVLLLSVLLFLFVSVCFSSCSEPQLGSKHLSRSSRRMLEEEDSENEQEFEQPLKKKPTKPITTNLSSKNQTKSIKSN NNNLSSKNQTKTTLNASTFKKLNSTSIKIKKLNNSTSKSFTNSSKTSTTSKKQLDLTKLAGAIAKNKTTKATTATDTKNK IKVNPGHIEEEKLNKQSNKKKQSPPNWMFEDEDSDLVSDFKDLPIRFQKSLIPDLERISTTSKSYFTRANKEFTKGFKPY VGNKYAPTIATLLSCAFVLIPLLLASLVLNKIKAYFSLQKLLLFIQAYLSIYFSILCLSSFVTGLEPLRFFFSTSQSSYL FLQVIQTLAYVLYLLLLLMYLVLVFSTDSGLGSKFLGLTQTFVGFAVGLHYYMTVFHRVVLRQPPKTNWKVHGIYATCFF VICVLAGADRRKKSYLEEGGEEGKKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 426 | 423 | 2.6E-171 | – | |
| PANTHER | 4 | 426 | 423 | 2.6E-171 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 244 | 223 | - | – | |
| MobiDBLite | 25 | 97 | 73 | - | – | |
| MobiDBLite | 35 | 58 | 24 | - | – | |
| MobiDBLite | 60 | 97 | 38 | - | – | |
| MobiDBLite | 147 | 188 | 42 | - | – | |
| MobiDBLite | 162 | 178 | 17 | - | – | |
| Phobius | 245 | 269 | 25 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 270 | 280 | 11 | - | – | |
| Phobius | 281 | 301 | 21 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 302 | 320 | 19 | - | – | |
| Phobius | 321 | 343 | 23 | - | – | |
| TMHMM | 323 | 345 | 23 | - | – | |
| Phobius | 344 | 354 | 11 | - | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| Phobius | 355 | 372 | 18 | - | – | |
| Phobius | 373 | 391 | 19 | - | – | |
| TMHMM | 391 | 408 | 18 | - | – | |
| Phobius | 392 | 408 | 17 | - | – | |
| Phobius | 409 | 426 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0087100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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