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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0088600 |
| Transcript ID | LotjaGi6g1v0088600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G30300.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|V7BP84|V7BP84_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0088600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:18392216..18392593) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTCCAATTACAATTGCATTCTTCTTACTTCTCAATAAAACAGACATTGCCCTTTACACAAGCACTGCAGTAATTGG AGTGTGTACTGGAGCAATCACTTCCATAGCTGTTTCCACAACAACTGAGTTATTTGGAACCAAACATTTTTCAGTGAATC ATAATGTGGTCGTGGCCAACATCCCCATTGGTTCGTTTCTGTTTGGCTACTCTGCTGCAATTCTTTACAATAAGGAAGGG AATGAACATGGGAAGTGCATGGGCATGGAGTGCTACAGTAACACGTTTCTCATATGGGGCTCCTTTTGCTTCCTTGGAAC TGTCTTGGCTTTGATTCTTCATGCTAGGACACGCCAGTTTTATTCACAAAAACAATAG
CDS sequence (LotjaGi6g1v0088600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCCAATTACAATTGCATTCTTCTTACTTCTCAATAAAACAGACATTGCCCTTTACACAAGCACTGCAGTAATTGG AGTGTGTACTGGAGCAATCACTTCCATAGCTGTTTCCACAACAACTGAGTTATTTGGAACCAAACATTTTTCAGTGAATC ATAATGTGGTCGTGGCCAACATCCCCATTGGTTCGTTTCTGTTTGGCTACTCTGCTGCAATTCTTTACAATAAGGAAGGG AATGAACATGGGAAGTGCATGGGCATGGAGTGCTACAGTAACACGTTTCTCATATGGGGCTCCTTTTGCTTCCTTGGAAC TGTCTTGGCTTTGATTCTTCATGCTAGGACACGCCAGTTTTATTCACAAAAACAATAG
Protein sequence (LotjaGi6g1v0088600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPITIAFFLLLNKTDIALYTSTAVIGVCTGAITSIAVSTTTELFGTKHFSVNHNVVVANIPIGSFLFGYSAAILYNKEG NEHGKCMGMECYSNTFLIWGSFCFLGTVLALILHARTRQFYSQKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 123 | 123 | 2.0E-61 | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| CDD | 1 | 107 | 107 | 9.65313E-26 | – | |
| PANTHER | 1 | 123 | 123 | 2.0E-61 | – | |
| Gene3D | 1 | 122 | 122 | 1.7E-6 | – | |
| SUPERFAMILY | 6 | 119 | 114 | 1.07E-8 | ||
| Phobius | 17 | 45 | 29 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 46 | 56 | 11 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 57 | 76 | 20 | - | – | |
| Phobius | 77 | 95 | 19 | - | – | |
| TMHMM | 96 | 115 | 20 | - | – | |
| Phobius | 96 | 115 | 20 | - | – | |
| Phobius | 116 | 125 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0088600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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