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LotjaGi6g1v0095600.2

Overview

Field Value
Gene ID LotjaGi6g1v0095600
Transcript ID LotjaGi6g1v0095600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT3G53570.1 serine/threonine-protein kinase AFC1; Swiss-Prot: sp|P51566|AFC1_ARATH Serine/threonine-protein kinase AFC1; TrEMBL-Plants: tr|W9RKJ5|W9RKJ5_9ROSA Serine/threonine-protein kinase AFC2; Found in the gene: LotjaGi6g1v0095600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:20582573..20586383) extracted from Lotus japonicus Gifu genome v1.2.

ACATAGAGACGACTGAGGACGAGGAATGATGTTCAGGGTCTGATTCGGTTGTGACAAACAAGCAAAAGAAATAGTTCAAT TCAATCAATCGATCGATCGAATTGGGATTAGGGTTCCTCATTCGACAGAGATGAACTACGGCTACACTACAGAATTTCCG ACGGATCGGCGTCCCCGGAAAAGGGCTAAATTGGTTTGGGATCTTCCTCAGGGTCAAACCCTCCCAAAGGTAATAACACC TTTCAATTTCGTTAGTTTTTTTTTTTAATTATCCATTCTGGGGGGAAATCCATCATGATTTTATTAAAAAAAATAGATCT GCCCGTTTATTTCTTGATAATTTCAAATTTGAGTACTTTAAGGTTTGCGGTTCGATGATAGATTTGGTAATTAGCTTAAA ATTAATTGGCTGTTAATTTTGTTCAAATGTTATATTGAATCTATTTTGTTCATATAGCATAATTTCTTTGCTTAAATAAC TTTTGAGATAGATGTCCGTTTCAATGATTTTATAAGTGGAAAATTGGGGATGGGGATGCATTTTTTAATATTGTTTCTTA ATCTTTAGTGTAGTATGAGTAAGTAATTTAATTCTGTGTAGGCTCATTCGGGATGGTATTGTGGACAAGAGGTTCCTAAT GTGGCAACAAGCAATGGAGTGCCACGGGTACAACCTGACCATGCTGGTCTTTTTGTAAATGGATATGCAGAAAAAGGCTC TCCCCAATGGCGAGATGATGACAAAGATGGACATTACATGTTTGCACTTGGAGACAATTTAACATCTCGGTGTAATGCAT TTAGCCACCATCAAAGAGCTTTTCTAAGTTTACTATTTTTGTTAGATATTCTTATGCTGCTTGCTCAATATTCTAATATC CGTTAGTTATATGATTTTTGAGACTACTTCAATGATAAATTTCAGAGGGATAATTATTTTCTCATTTTTTGAAGAAAGGA TAAATTCTTTTGACATGCATGTTCAAAATGTATATTTGAAGTTTGTTTAAGTTGCATGATTACTTTATACTTTTTTACCC TAAAATTTACTGCCCTATCTTCTTCAATCCACATCTTTTTTTAAACCTTCCTGTGTGCTTGTGTTAATGTAAGAACTGAA AAGATCCTTCCCTATAGTTTTTCTTCTCATATTTGCCTATTAAAATATTTCCACTAATGTCCTTGCGAATCTTGACAAGT GATGAGTTGTTTTGAATTTCGATGCCTTGATTTGTATACATTTTTTATTTCGTCTAATCATTATGTCTTTGTTTCTATAC TTGCAGATAAGATCCTCAGGAAAATTGGTGAAGGTTGTTATTACAATTATCTTGTTTACTTCTTTAAGCATTGTTTTGTT TATGGATTTTGAGTCCTATCCTTATGCTATCTGTTCTATGTTTGAAGGGACTTTTGGTCAGGTTCTAGAATGCTGGGATA GAGAAACGAGGGAGCTGGTTGCCATAAAAGTTGTGCGTAGTATTAAGAAATATCGTGAAGCAGCAATGTTAGAAGTTGAT GTGCTCCAATTGGTTGGGAAGTATGACAAGAATGGCAGCCGGTAAGTTTGTTTTCTTTTATTATTCTGTATGTAATGTAC TACTGGCTATGAATTGAGGTTTGTGCCAGTTGTTAAGTCATTTTATCATATGCAGCTGTGTTCAAATACGCAACTGGTTT GACTACCGTAACCATATTTGCATTGTGAGTATCTAATTGACATATGGTGAAATCATTTCCAAACTTCACAAATATTTCTG GGGGATAAGACTTGTCAGTGAAATTTCAATGGTCTTAACAGGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTT CGGAAGAACAATTATCGCCCATTTCCGGTTGATCTTGTCCGTGAGCTTGGCAGGCAACTGTTGGAATGTGTAGCATGTAC GTAATTGCTTCTTCCACTGTTTCTATTCTTTCCAAACTTTGTGGCAAAAGTCATATAAATGGCACTGTTCTCTCTTCTTT AGGGAGTTATGATGGTTACTTTGGGATTTATTCAGTAAAAAAAGTCAACTGGTCACTTATTTTTCCCAACAGTACTTTTA TAACTCTTTTTGAATCATTTAAAACCATTAGACTATTGTGGATGGTTAGAGATATCTCACTCCCCATGACAGTTGGAAAA AAAAAGGAGGAAATTGTTCAATTTTTTTATAATACCTGTGTTGACTGTGTTTCGAAAATTGCAGTCATGCATGATTTGCG CCTCATCCACACAGACTTGAAGCCTGAAAATATACTTTTTATTTCCTCAGAATATGTAGTTCCTGACTACAAGGTATTTC TGCTTTTTTTTTGGTGTTCAAATTTTAGAATTTTTAGATTATGTTCTATTTTTGTGTGCTAGTGGCGCAATGGTTCTGTT TCACCACATGCCTAAACGTTTATCTATATCTTAGTCAAGTAATAACAAATTTTTAAAAATTGAAGGTTACATTCCGGTCA CCAAAAGATCCCATCTCTTTTAAGAGACTGCCAAAGTCAAGTGCTATTAAGGTTATCGACTTTGGTAGTACGGCCTATGA GCACCAAGGTCACAACTATATTGTCTCTACTAGGCATTATCGGGCACCTGAGGTTATTCTCGGTAAGTTTCTATTTCTCT TCATATGCCTATGATTTTTTATGGTCAGCTTATTTGAAGTTTTAGTGTGTTTTTATGGTCAGCTTATTTCTCTTCATGTG GTTCAAAAGTAATTCTAGCTTGTTTGCTTGCTTCTAGGACTTGGGTGGAGTTCTCCTTGTGACATATGGAGTGTTGGATG CATTTTGATGGAGTTGTGCTCGGTATGTGGAGTTCCTCAGTATAGTGATTTCTAAGCTAGAAAGTTTTATCCAAGTTTAC TAAATGAGCAATGTTATGAACTGCAAAATGGTTTCAGGGAGAAGCTTTGTTTCAGACGCATGAGAATTTGGAGCACCTAG CCATGATGGAGAGGGTTTTAGGCCCTTTACCACAGCACATGTTGAAAAGAGCAGAGTGAGTGGGGCATTTCAAAGTAGTG TGTTTTTTTAATTGTTCTCTCGTGTAGATGTTTCACTTATTCATAATCTCCAACTGCTTCTTGCACAGCCGGCTTGGAGA GAAGTATGTCAGAAGGGGTAGACTGAACTGGCCTGAAGGAGCAGTCTCTCGAGAAAGCATCAAGGCAGTCTTGAAACTGC CTCGTCTTCCTGTCTGTTAATATTTTACCTGTCTAGTTCCATTTTATTTTCCTTCTCTTTCATTCTACATTCTTATGCTT GTTGTTTTAACAGAATCTGGTGATGCAGCATGTGGATCACTCTGCTGGGGATCTTCTTGATCTCTTGCAGGGCCTTCTTC GATTTGATCCCTTCTGCAGGCTAAAGGCCCACGAAGCGCTCAGGCATCCCTTTTTTACCAGGGAGCATTACCAGAGATTT TAATATAGGGTGCGTTTCCCCTGCCGGGAATGGATTGACGTCCATTACTGCTGATATTTGCCTGGTTGTTGTATATTTTG CTATAGTGAATTGTAATGTCTTGTAAGGGTTCTGAGTGGTGGTTCTCTTTTCTTGATATCATCATGTCAAGTGTGGGGGT TTATTTTCCCCTTTTGATACCTAGGTTTTGTAGATATTTTTTGTGTGGAGGATCTTTTTCCATCTCCAATTTTGTACGAT GGAAGTGTAATGAGAAGCGTTTTACTTATGATACAACTCTTGCTTTGACCAGCTGGCCTGATACTCGGTGATAATCATCA TGCAATATGGGAGGTTCTCTTCACATTTCTATTAACACTTTATTATACTAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0095600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTGGACCAAGCTTATATGATTTTCTTCGGAAGAACAATTATCGCCCATTTCCGGTTGATCTTGTCCGTGAGCTTGG CAGGCAACTGTTGGAATGTGTAGCATTCATGCATGATTTGCGCCTCATCCACACAGACTTGAAGCCTGAAAATATACTTT TTATTTCCTCAGAATATGTAGTTCCTGACTACAAGGTTACATTCCGGTCACCAAAAGATCCCATCTCTTTTAAGAGACTG CCAAAGTCAAGTGCTATTAAGGTTATCGACTTTGGTAGTACGGCCTATGAGCACCAAGGTCACAACTATATTGTCTCTAC TAGGCATTATCGGGCACCTGAGGTTATTCTCGGACTTGGGTGGAGTTCTCCTTGTGACATATGGAGTGTTGGATGCATTT TGATGGAGTTGTGCTCGGGAGAAGCTTTGTTTCAGACGCATGAGAATTTGGAGCACCTAGCCATGATGGAGAGGGTTTTA GGCCCTTTACCACAGCACATGTTGAAAAGAGCAGACCGGCTTGGAGAGAAGTATGTCAGAAGGGGTAGACTGAACTGGCC TGAAGGAGCAGTCTCTCGAGAAAGCATCAAGGCAGTCTTGAAACTGCCTCGTCTTCCTAATCTGGTGATGCAGCATGTGG ATCACTCTGCTGGGGATCTTCTTGATCTCTTGCAGGGCCTTCTTCGATTTGATCCCTTCTGCAGGCTAAAGGCCCACGAA GCGCTCAGGCATCCCTTTTTTACCAGGGAGCATTACCAGAGATTTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0095600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLGPSLYDFLRKNNYRPFPVDLVRELGRQLLECVAFMHDLRLIHTDLKPENILFISSEYVVPDYKVTFRSPKDPISFKRL PKSSAIKVIDFGSTAYEHQGHNYIVSTRHYRAPEVILGLGWSSPCDIWSVGCILMELCSGEALFQTHENLEHLAMMERVL GPLPQHMLKRADRLGEKYVRRGRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLLDLLQGLLRFDPFCRLKAHE ALRHPFFTREHYQRF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45646:SF14
1 253 253 1.3E-159 –
PANTHER
PTHR45646
1 253 253 1.3E-159 –
SMART
SM00220
1 247 247 1.0E-17
IPR000719
ProSiteProfiles
PS50011
1 247 247 28.202
IPR000719
SUPERFAMILY
SSF56112
1 251 251 1.05E-53
IPR011009
Gene3D
G3DSA:1.10.510.10
2 246 245 2.9E-74 –
Pfam
PF00069
5 247 243 1.0E-32
IPR000719
ProSitePatterns
PS00108
42 54 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0095600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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