Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0101700 |
| Transcript ID | LotjaGi6g1v0101700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:22361810..22368532) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAACTATTTATCAAGCATGCCAAATATAGCCTTAACCTGAGCTTATTTGATTTGATTTCTCATGGAATTGTTTTTTC CTTTTGTCAAAATCTGTTGATGAGGCTGAGCTGTCCCCTGCTTCACAGTGCAAAAGAGACCACAATAGTTGTGTGAGTGC TAGAGACCCAGAGAGTACGTTCAGGTTCAGCAGTATGTGCTACTGCTAGTGGTTGCATTTCTCCTTAATGGAATGCTTGC AATTCTAGTTCAAGTCCTAATCCAAATGCTCTTCAATTTCTCCTCTTTGGTCTTTGCTTCATGCTCTGTGTAAGTATTTT TCCAATTTCACTAACCTTACCACTTTCTCTCTCCCCTAACCCTTTTTCTCCATTTGCTTTTCCTGATTTAGCTTACAGAA ACCTCGAGGTGTGTGTTAATCTGTGAAACAAGCTCTTTTCTTTTTATGGCTCCTCTTCTGTTTTTGAGATTGACTAGCAA GAAACCACCGAACAAATGGGTGCACCACTAGTACTGCAGCTTTTGCAATTTCCTTTTTTGCAGTATAAAGATGACAACTT GAAACATAAAATACAATGACACGGTGGTGGTTTTGTTTATTTGGGTAATATTTTTCAGTGATGGGTATACTATTATTAAC CATACTGGGGGCATTACTTCCTTTTGTGGTTGAGTCAGATTGCAACATCCTTTTCCTGAAACCTTGGCTTTCATTATGTG AAAAAATATGCTTTTTTAATGGAATTTCTGTCATACAAAGCCTTGTGCTTTTTTAGGGTAAAAGGAACCAAACCAAACTT TTTCAATGTACTAGTGTAGTCCGAAGGAAAGTTGAAATTGGCTTCCATAACGCATTGAGCTAGCTTCAGCACCTAACCCA GCATCAAAATATTTAAATTTATTATCAGCTATTATCTATTTAGATTAATCCTAGGCGTCCTGGAATGATAGCTCAAGTGG TAAGAGCTATGAGACATATGAGTTGGGTGGGGGGGTCCAGGTTCAATCTTTGGAGGGTGCAATTTATCTTTCTGATGTAC AAAAAAAAAAGATTAATCCTAGGCAATGATTAATTACAAAATCAAAGGCATATCTATAATGAGGAAGGTGTAGAGAATCC AAATTGGGTTTCTTCTCCTTAGATTTGGGGCATTAAATTAAAACATAGGTTTGTGGGGTTTAGATTGATTAGTTTGTGAC ATTTATGGTTTGGAGGTTAGGTTGTTGGCAAGAGTGTTGGAAGTTCTGAGATGTCAAGTAAGTCATCATTTGTTGGGTTG TTGTTGTTTGTGGGGTCTCATTCAATGACCGACTCCTGACATTGCTGTGGTAAATGCTAATTATTGGAATCTGAAGGTTT CCCACATTGAAAGTGAAGTTTTTGGTGGTGGTGGTGTAAGTAAGTACATGCTTTTAGGAAGACTTCAAGAGTTAAACACA TCACATCTATAGGGCCAATCCCCCACAGGCACAGATGAAGTAATTTATCAACATATCACATCAATAGGGACTGACTGGTA CCGTTTCTTTCTATTTCTATGAAGCAATAAACTACATAAAGCCATGACTCTCTGTATTATTGATAGTGGGGGCTGCTTCA CATCACCATGAGTAATCTCACAATACTAAAATACAGCAATCTAGCTATCTGTGAACCCAATGGATGGGATTTGTGGAACA CAGTGGACTCCACGGATTTGTGTAATTAGATTCTTTGTTTTGGTTACTATAGACAACATAAGACTTCTTTTTAATTGCAT CTCAGGTTGGAGTTTTCCTTCGCTTAGCTTCGGTCTATCATATGATATGCTCAAACTAATTTACACTTATCGGTTCCTAT TTCTATTTGCTATGTATTTGTTCTGCTGCAAGATATTTTCATTGCCTGTTTCAGTTTTTCATTTGCTTCTCCATGGCTTC TAGTTGGCCTGGTAATACAGCCAGCCTAAGACCAGAAACAAGTAACATAATATTACCTGCTAAGAATAATCAACATATAC CTTTCCAAATTAGAAGTTCATAGATTATTGATAATTTGAGACTGTTTACAATTTTCAGACTCTTAATATGCATTTTTTGG TGTACTTAATTTATACTACTCTTGGTGCTTTTTACTTCTGCCAATCACTATTCCAGTTTCTTTGATTTCTTTGACTTGTT TAATCTGTAATAGAATCTTGAATGATTTTTATTTTCTTTTGGAGAAACTAAAGCAGCAAACATTATATCATTTGACTTGT AGTTTGCAGATAACTGTTACCATTTGTGTATGAAATTGTGAGGCGTTGTTATGGACTGGAATGTGAAATCTCTCGGGCAA TGGGATTGGGAGCATTTCTTCTTGAATTCAAAAGCAACAGAAAATCCCACGTCCCAACCCACTGATTGGAGTAGTGAAGC CGATCGAGAAATAAATGTCGGGGTGTTGTATCCATCAGGCAGTAGTGGTGGTTATTCTGGGTCTGAACTAATACATGCCG CTACTTCCTCAAGGAGTTCAAAATCACCTTCCAACATTTCATCATCAAATGGGGATAGCAAGACATCTATGTTAACTCTT GAAGGTTCTCCAGATGATTCCATTGGTAAGAAAGAATTGACCAAAGGAGAGCCAGTTGACACTTCTACAGAAGCAGAGCC CTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAAAGATTGTATTTTGAGGATGTTTGTGCAGGAATTG ATTCCAAAAAGTCACCTGCTTCTGGGGTTACCATTTCATCTGGAAAGAGATGTAAATCCAGTAATCAGAACTTACAACAC ACAAGCTGCCAGGTAGAAGGCTGTGGCCTTGATCTCTCATCTGCTAAAGAATACCATCGCAAGCATAGAGTTTGTGATAG TCATTCCAAATCCCCTAAGGTGGTTATAGCTGGATTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTAAATCTTGAGAA ACATTTTATTTATGTTTCATTGAAAATGACATTTAGTAACAAAATATTTTTCAGAAACATATCATTAAGAATAAAGATTA GTTTTCTGCTTCGTTTTGAATAAATTGATATAACGCTTTTCACTTAAACTATGATGTTGAAGGTTCCATGCTCTGTCAGA GTTTGATGATAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAG TCCAATTAAATCCATCAGCTTTGTCTTCATCGACCTATGGTATAAATCACAAGGGTACTGACATTCCCCTTCATTATCTT TTTAGCATTGAGTGCTAACAGCTCAGGACCATGCATAAATACATATATACGTACATATTGATAGGAACTAGAATCTTTTT TTCTCAAAATTGGGATTACAGATTAGAACTTGGAGGATCTATCAAACCACCCAATGCACAGAGGTTCTATACTCTTTTAA ATGACTAGACTCCCTCTCCCCTCTCAACCGTTCTTCTATTTCTAGGCAACATGCATTATTCCTTCAAACCAATTAACCAC ACTTCCAAACAATTATTCAACTAACTAACTACATTTTTTTTGATAAGCTGAACTGTTTTAAGCAAGCACAAGGGGTGCTT AAACCCATATACAACACATAATGTAACAAGATTCAGCAATAGAAAAGGATTATATGACAGATAACAGATAACATAAGGAG CATGGTAGTCAAAATTCTGATTGTAATCCCTTAATCCCACGATTTTGCTGATTACAATGCTCTTGGGCAATTAAAACCAG TTGCATAATCCTTTTCTGGCTTAATCTGACCTTAAACGTGATAAAATCGCATCTTAATCGCGATTATGTGATTATGCGAA GCTCAGCCCATGTGATACGGGTTTGAGTCTTTGATCCGCTTCCTAAACGAGACATGTTTCGCAAAACCCCAGTTGAGCCC CCTTCTCTCCCTCACTAATGTCGGCAAGCCCCTTTTCTCTCCCCCACTGCACCAGTGACAACGCTCCGACACCGGCGACA AGAGACTGGGATTGGGGCTGGTAAGTCAAGTGGTGGTGTTGGGACTGGGGCTGGTACTCAGGCTGTTTTAGTATGGCATT CCTTTGAATTATGAGTTGAGAGTAGAACTATATTTAAGTGTTTTTAGTGGTTTAAAGTGATTTTTTGTTATTTCTGAAAT TTTATATGAATATATATGAACTTTGCTAAATTTTACGATTAATCTTACGACTACACAATTTATGATTAACACCCCCTCCC CAATTAAAGGCATAATACCAATATTGACTGCCTTGCTAAGGAGGTTAACTATCACATACATACATGCATGCCTGTTTTAT ACTGCTAAATTTGATGAAATGCATCTTCTAATATTTTTTCCCATGTCAAAACTCAAACCAAACAAAAACATAGCTTAATT GTTCACTGAGTTACTATGTAGGTTGTAGTTTGTTGGAATTCACTCTTAAAAATTTTTAGGCAAGACATTCTTAAGCACTG GGGATACTTTACTATTACTTACAAATCCAGCCGGGAATGTCCAATCTGTCAATTTAGCATAAATATTTGCCTGCTTCTTT CAGTAACTGATGAGAAGGTATTTAAAATTTGTAGTACCAACGGTAAAAAGTTTTTGCCATGTGACTGAGGTCACACGTTC ATGTCCTGGAAACCGTCTCCTTTGTAAGAACAAAGTAACATTGCGGACGTTGACCCCACACATAGCGGGAGCTTTAATGC ATCGGGCTTCCCTTTAGTATTATGATAGCACTGCATATTCATGTAATGATGATAGAGTGTTTCTATTCCCACTATCTAAT TTATACTAGTGCTGCAGATGGTAGGAAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCATGGCAAG ACATGCACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTTTTGAAGACTGCAAAAGCCTTCAATAAGACATCAAGTATT TCTCCTATGCTTTCTGCTGATTCCAGTCGCCTTCTTACATCCAAAGGCATAGGAACCAAGATTATTGTTCCAGGTTCTGC TCCTCTTTCTTAATAATTGAGCCTTGTGATTTCACATCAAATTTAAATACTTCATTTATTGATCTAATTCCAGAACAGAA TTTCCAATATTTGCCTCCTGTTTTGTTTTAATTTTTTTTTGAAGAATTTATGAAATCGTACTAAAAAAAATCAATAGCCA AATATTTGATGAGCTCTGTACTAAACCACAGCAACTCCTAGCATAGTTCCCTTAAAGGTTAGCTCCACAATCCTCCTAGC CTAGTTCCCTAAAGGGGAAAGAAATAAACCGGTGTATTCAATACTTTGGGAGTCCCAAAACTTGGCTTTTTATTATCTTC TTTTCTCCATGTGATTTGTAGGATTGTCAAGCTCATGTTTTTTGGAAGATAATATAACATTTGTTAATAGCATGTTAGTA TCATTTTTTTCCCTCAAAAATCAAAATCAATCCTGACACCTAGGAAGTAGGAACTACTCAAAAAAGCTACTCCGCATAAC TGATTTTGGTACAATTGTAGAAGGATTGCCAAACATTCACTAAGTGCGTGTTCGGATCAGTGCTTGTCACAATTGATATT GGTAAATTTGATTATAGTAAAAGTGATTTGAAATTGAAGTGATTTATATTCGGATACATTTATGAAAAAGTGAATTTTGT TGGGTAATGCTTGGGAAATTCATTTGTAAAATCTCACAATTGATTATATGAACACGAGCTACTCTCTCTTGGTTCTACCA TAGTTGAATTTGGGTCTGAAATCAATTCTAAGAAAGGACTCGCAAACATCAATATTTTCATCGATAATTGACTTTTCTCA TCCAGAAGATTCTGGGGTTTCCCAATGGGAAATAAAACACTCTTAGAGTGAATAGTTTATTACTGATATAATTAAGGGTT GTCTCTGGGTAGAAAGAATCATTATTCACTTGATAGGTTGTTTGTTACAGGTATAGAAGATTCCACTACCTCATCTACAC AAGAAGTTAACCGTGCTCTCTCTCTTCTGTCAATCAATTCATGGGGTGCATATGAGACTAAATCCCTGTCCCTAGAGCAT TCCAATCAGTCCATAGCAAATGCAATGACTCTTCCTTCATCAGAATATTGGCCCTCTGATCAACTCTCATACTCGGATTG TGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGCGCGCCCTTTGAGTCAGGTTTTCCTTGCAACCAGCTGGATT AACCTGAGTGTGCTTATTAAGAATGTTACATCCCCATCATATGACATTTATTTCATGTCAGTTTGTAGGGCTTATTATCT GTTGGAATATCATATAACTTAGTATCTTATTATTTGAAGTAGTGTGTTTGACAATGCACTTCAACGAGTTTAAAGCAGGT TTATAAGCTTGTTTAACTCAACTTTAAGGCGTTTACTGATATTAGACATCTCCCATTTCATTTGCTTAGGAATCAGGAAT GTTTTTAAGCTTGTGTCGGGTTACGGCTAAAGCAATGTAGATTTCTGCAACCCTTCACTTTGGGTCGTTTCTGTTTGTTT ATTTAATATGAAATAATCACTTATTTTCAAAAAAATAATGGCTAATTGCATTGAACTTCCATCTATTATTTAACAAGACA CTAATTACCATTATTTTATTAGAAGCATTTCACTAACCTTCCTTGAGGTTTATTATTATTGCGGTGGTCTTCCCTAAGAT TTA
CDS sequence (LotjaGi6g1v0101700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGGAATGTGAAATCTCTCGGGCAATGGGATTGGGAGCATTTCTTCTTGAATTCAAAAGCAACAGAAAATCCCAC GTCCCAACCCACTGATTGGAGTAGTGAAGCCGATCGAGAAATAAATGTCGGGGTGTTGTATCCATCAGGCAGTAGTGGTG GTTATTCTGGGTCTGAACTAATACATGCCGCTACTTCCTCAAGGAGTTCAAAATCACCTTCCAACATTTCATCATCAAAT GGGGATAGCAAGACATCTATGTTAACTCTTGAAGGTTCTCCAGATGATTCCATTGGTAAGAAAGAATTGACCAAAGGAGA GCCAGTTGACACTTCTACAGAAGCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAAAGAT TGTATTTTGAGGATGTTTGTGCAGGAATTGATTCCAAAAAGTCACCTGCTTCTGGGGTTACCATTTCATCTGGAAAGAGA TGTAAATCCAGTAATCAGAACTTACAACACACAAGCTGCCAGGTAGAAGGCTGTGGCCTTGATCTCTCATCTGCTAAAGA ATACCATCGCAAGCATAGAGTTTGTGATAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGATTGGAACGTCGATTTT GCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGATAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCAC AATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATCCATCAGCTTTGTCTTCATCGACCTATGGTATAAA TCACAAGGATGGTAGGAAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCATGGCAAGACATGCACA GCAGCAAGCTCCCCCAGACAAAAGATTTTCTTTTGAAGACTGCAAAAGCCTTCAATAAGACATCAAGTATTTCTCCTATG CTTTCTGCTGATTCCAGTCGCCTTCTTACATCCAAAGGCATAGGAACCAAGATTATTGTTCCAGGTATAGAAGATTCCAC TACCTCATCTACACAAGAAGTTAACCGTGCTCTCTCTCTTCTGTCAATCAATTCATGGGGTGCATATGAGACTAAATCCC TGTCCCTAGAGCATTCCAATCAGTCCATAGCAAATGCAATGACTCTTCCTTCATCAGAATATTGGCCCTCTGATCAACTC TCATACTCGGATTGTGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGCGCGCCCTTTGAGTCAGGTTTTCCTTG CAACCAGCTGGATTAA
Protein sequence (LotjaGi6g1v0101700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWNVKSLGQWDWEHFFLNSKATENPTSQPTDWSSEADREINVGVLYPSGSSGGYSGSELIHAATSSRSSKSPSNISSSN GDSKTSMLTLEGSPDDSIGKKELTKGEPVDTSTEAEPSSVSGEPLLTLKLGKRLYFEDVCAGIDSKKSPASGVTISSGKR CKSSNQNLQHTSCQVEGCGLDLSSAKEYHRKHRVCDSHSKSPKVVIAGLERRFCQQCSRFHALSEFDDNKRSCRRRLSDH NARRRKPQPEAVQLNPSALSSSTYGINHKDGRKIMSPFAFSRTATNLAWQDMHSSKLPQTKDFLLKTAKAFNKTSSISPM LSADSSRLLTSKGIGTKIIVPGIEDSTTSSTQEVNRALSLLSINSWGAYETKSLSLEHSNQSIANAMTLPSSEYWPSDQL SYSDCDNSNRFQDFQLLSAPFESGFPCNQLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 414 | 387 | 1.8E-89 | – | |
| PANTHER | 28 | 414 | 387 | 1.8E-89 | – | |
| MobiDBLite | 44 | 122 | 79 | - | – | |
| MobiDBLite | 49 | 92 | 44 | - | – | |
| MobiDBLite | 95 | 109 | 15 | - | – | |
| Gene3D | 163 | 234 | 72 | 2.7E-33 | ||
| ProSiteProfiles | 170 | 247 | 78 | 32.274 | ||
| SUPERFAMILY | 172 | 252 | 81 | 7.72E-39 | ||
| Pfam | 173 | 246 | 74 | 1.0E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi6g1v0101700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…