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LotjaGi6g1v0101700.2

Overview

Field Value
Gene ID LotjaGi6g1v0101700
Transcript ID LotjaGi6g1v0101700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:22361922..22368351) extracted from Lotus japonicus Gifu genome v1.2.

GTCCCCTGCTTCACAGTGCAAAAGAGACCACAATAGTTGTGTGAGTGCTAGAGACCCAGAGAGTACGTTCAGGTTCAGCA GTATGTGCTACTGCTAGTGGTTGCATTTCTCCTTAATGGAATGCTTGCAATTCTAGTTCAAGTCCTAATCCAAATGCTCT TCAATTTCTCCTCTTTGGTCTTTGCTTCATGCTCTGTGTAAGTATTTTTCCAATTTCACTAACCTTACCACTTTCTCTCT CCCCTAACCCTTTTTCTCCATTTGCTTTTCCTGATTTAGCTTACAGAAACCTCGAGGTGTGTGTTAATCTGTGAAACAAG CTCTTTTCTTTTTATGGCTCCTCTTCTGTTTTTGAGATTGACTAGCAAGAAACCACCGAACAAATGGGTGCACCACTAGT ACTGCAGCTTTTGCAATTTCCTTTTTTGCAGTATAAAGATGACAACTTGAAACATAAAATACAATGACACGGTGGTGGTT TTGTTTATTTGGGTAATATTTTTCAGTGATGGGTATACTATTATTAACCATACTGGGGGCATTACTTCCTTTTGTGGTTG AGTCAGATTGCAACATCCTTTTCCTGAAACCTTGGCTTTCATTATGTGAAAAAATATGCTTTTTTAATGGAATTTCTGTC ATACAAAGCCTTGTGCTTTTTTAGGGTAAAAGGAACCAAACCAAACTTTTTCAATGTACTAGTGTAGTCCGAAGGAAAGT TGAAATTGGCTTCCATAACGCATTGAGCTAGCTTCAGCACCTAACCCAGCATCAAAATATTTAAATTTATTATCAGCTAT TATCTATTTAGATTAATCCTAGGCGTCCTGGAATGATAGCTCAAGTGGTAAGAGCTATGAGACATATGAGTTGGGTGGGG GGGTCCAGGTTCAATCTTTGGAGGGTGCAATTTATCTTTCTGATGTACAAAAAAAAAAGATTAATCCTAGGCAATGATTA ATTACAAAATCAAAGGCATATCTATAATGAGGAAGGTGTAGAGAATCCAAATTGGGTTTCTTCTCCTTAGATTTGGGGCA TTAAATTAAAACATAGGTTTGTGGGGTTTAGATTGATTAGTTTGTGACATTTATGGTTTGGAGGTTAGGTTGTTGGCAAG AGTGTTGGAAGTTCTGAGATGTCAAGTAAGTCATCATTTGTTGGGTTGTTGTTGTTTGTGGGGTCTCATTCAATGACCGA CTCCTGACATTGCTGTGGTAAATGCTAATTATTGGAATCTGAAGGTTTCCCACATTGAAAGTGAAGTTTTTGGTGGTGGT GGTGTAAGTAAGTACATGCTTTTAGGAAGACTTCAAGAGTTAAACACATCACATCTATAGGGCCAATCCCCCACAGGCAC AGATGAAGTAATTTATCAACATATCACATCAATAGGGACTGACTGGTACCGTTTCTTTCTATTTCTATGAAGCAATAAAC TACATAAAGCCATGACTCTCTGTATTATTGATAGTGGGGGCTGCTTCACATCACCATGAGTAATCTCACAATACTAAAAT ACAGCAATCTAGCTATCTGTGAACCCAATGGATGGGATTTGTGGAACACAGTGGACTCCACGGATTTGTGTAATTAGATT CTTTGTTTTGGTTACTATAGACAACATAAGACTTCTTTTTAATTGCATCTCAGGTTGGAGTTTTCCTTCGCTTAGCTTCG GTCTATCATATGATATGCTCAAACTAATTTACACTTATCGGTTCCTATTTCTATTTGCTATGTATTTGTTCTGCTGCAAG ATATTTTCATTGCCTGTTTCAGTTTTTCATTTGCTTCTCCATGGCTTCTAGTTGGCCTGGTAATACAGCCAGCCTAAGAC CAGAAACAAGTAACATAATATTACCTGCTAAGAATAATCAACATATACCTTTCCAAATTAGAAGTTCATAGATTATTGAT AATTTGAGACTGTTTACAATTTTCAGACTCTTAATATGCATTTTTTGGTGTACTTAATTTATACTACTCTTGGTGCTTTT TACTTCTGCCAATCACTATTCCAGTTTCTTTGATTTCTTTGACTTGTTTAATCTGTAATAGAATCTTGAATGATTTTTAT TTTCTTTTGGAGAAACTAAAGCAGCAAACATTATATCATTTGACTTGTAGTTTGCAGATAACTGTTACCATTTGTGTATG AAATTGTGAGGCGTTGTTATGGACTGGAATGTGAAATCTCTCGGGCAATGGGATTGGGAGCATTTCTTCTTGAATTCAAA AGCAACAGAAAATCCCACGTCCCAACCCACTGATTGGAGTAGTGAAGCCGATCGAGAAATAAATGTCGGGGTGTTGTATC CATCAGGCAGTAGTGGTGGTTATTCTGGGTCTGAACTAATACATGCCGCTACTTCCTCAAGGAGTTCAAAATCACCTTCC AACATTTCATCATCAAATGGGGATAGCAAGACATCTATGTTAACTCTTGAAGGTTCTCCAGATGATTCCATTGGTAAGAA AGAATTGACCAAAGGAGAGCCAGTTGACACTTCTACAGAAGCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTC TAAAGCTTGGTAAAAGATTGTATTTTGAGGATGTTTGTGCAGGAATTGATTCCAAAAAGTCACCTGCTTCTGGGGTTACC ATTTCATCTGGAAAGAGATGTAAATCCAGTAATCAGAACTTACAACACACAAGCTGCCAGGTAGAAGGCTGTGGCCTTGA TCTCTCATCTGCTAAAGAATACCATCGCAAGCATAGAGTTTGTGATAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTG GATTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTAAATCTTGAGAAACATTTTATTTATGTTTCATTGAAAATGACAT TTAGTAACAAAATATTTTTCAGAAACATATCATTAAGAATAAAGATTAGTTTTCTGCTTCGTTTTGAATAAATTGATATA ACGCTTTTCACTTAAACTATGATGTTGAAGGTTCCATGCTCTGTCAGAGTTTGATGATAACAAAAGAAGCTGCAGACGGC GTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATCCATCAGCTTTGTCTTCATCG ACCTATGGTATAAATCACAAGGGTACTGACATTCCCCTTCATTATCTTTTTAGCATTGAGTGCTAACAGCTCAGGACCAT GCATAAATACATATATACGTACATATTGATAGGAACTAGAATCTTTTTTTCTCAAAATTGGGATTACAGATTAGAACTTG GAGGATCTATCAAACCACCCAATGCACAGAGGTTCTATACTCTTTTAAATGACTAGACTCCCTCTCCCCTCTCAACCGTT CTTCTATTTCTAGGCAACATGCATTATTCCTTCAAACCAATTAACCACACTTCCAAACAATTATTCAACTAACTAACTAC ATTTTTTTTGATAAGCTGAACTGTTTTAAGCAAGCACAAGGGGTGCTTAAACCCATATACAACACATAATGTAACAAGAT TCAGCAATAGAAAAGGATTATATGACAGATAACAGATAACATAAGGAGCATGGTAGTCAAAATTCTGATTGTAATCCCTT AATCCCACGATTTTGCTGATTACAATGCTCTTGGGCAATTAAAACCAGTTGCATAATCCTTTTCTGGCTTAATCTGACCT TAAACGTGATAAAATCGCATCTTAATCGCGATTATGTGATTATGCGAAGCTCAGCCCATGTGATACGGGTTTGAGTCTTT GATCCGCTTCCTAAACGAGACATGTTTCGCAAAACCCCAGTTGAGCCCCCTTCTCTCCCTCACTAATGTCGGCAAGCCCC TTTTCTCTCCCCCACTGCACCAGTGACAACGCTCCGACACCGGCGACAAGAGACTGGGATTGGGGCTGGTAAGTCAAGTG GTGGTGTTGGGACTGGGGCTGGTACTCAGGCTGTTTTAGTATGGCATTCCTTTGAATTATGAGTTGAGAGTAGAACTATA TTTAAGTGTTTTTAGTGGTTTAAAGTGATTTTTTGTTATTTCTGAAATTTTATATGAATATATATGAACTTTGCTAAATT TTACGATTAATCTTACGACTACACAATTTATGATTAACACCCCCTCCCCAATTAAAGGCATAATACCAATATTGACTGCC TTGCTAAGGAGGTTAACTATCACATACATACATGCATGCCTGTTTTATACTGCTAAATTTGATGAAATGCATCTTCTAAT ATTTTTTCCCATGTCAAAACTCAAACCAAACAAAAACATAGCTTAATTGTTCACTGAGTTACTATGTAGGTTGTAGTTTG TTGGAATTCACTCTTAAAAATTTTTAGGCAAGACATTCTTAAGCACTGGGGATACTTTACTATTACTTACAAATCCAGCC GGGAATGTCCAATCTGTCAATTTAGCATAAATATTTGCCTGCTTCTTTCAGTAACTGATGAGAAGGTATTTAAAATTTGT AGTACCAACGGTAAAAAGTTTTTGCCATGTGACTGAGGTCACACGTTCATGTCCTGGAAACCGTCTCCTTTGTAAGAACA AAGTAACATTGCGGACGTTGACCCCACACATAGCGGGAGCTTTAATGCATCGGGCTTCCCTTTAGTATTATGATAGCACT GCATATTCATGTAATGATGATAGAGTGTTTCTATTCCCACTATCTAATTTATACTAGTGCTGCAGATGGTAGGAAAATAA TGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCATGGCAAGACATGCACAGCAGCAAGCTCCCCCAGACAAAA GATTTTCTTTTGAAGACTGCAAAAGCCTTCAATAAGACATCAAGTATTTCTCCTATGCTTTCTGCTGATTCCAGTCGCCT TCTTACATCCAAAGGCATAGGAACCAAGATTATTGTTCCAGGTTCTGCTCCTCTTTCTTAATAATTGAGCCTTGTGATTT CACATCAAATTTAAATACTTCATTTATTGATCTAATTCCAGAACAGAATTTCCAATATTTGCCTCCTGTTTTGTTTTAAT TTTTTTTTGAAGAATTTATGAAATCGTACTAAAAAAAATCAATAGCCAAATATTTGATGAGCTCTGTACTAAACCACAGC AACTCCTAGCATAGTTCCCTTAAAGGTTAGCTCCACAATCCTCCTAGCCTAGTTCCCTAAAGGGGAAAGAAATAAACCGG TGTATTCAATACTTTGGGAGTCCCAAAACTTGGCTTTTTATTATCTTCTTTTCTCCATGTGATTTGTAGGATTGTCAAGC TCATGTTTTTTGGAAGATAATATAACATTTGTTAATAGCATGTTAGTATCATTTTTTTCCCTCAAAAATCAAAATCAATC CTGACACCTAGGAAGTAGGAACTACTCAAAAAAGCTACTCCGCATAACTGATTTTGGTACAATTGTAGAAGGATTGCCAA ACATTCACTAAGTGCGTGTTCGGATCAGTGCTTGTCACAATTGATATTGGTAAATTTGATTATAGTAAAAGTGATTTGAA ATTGAAGTGATTTATATTCGGATACATTTATGAAAAAGTGAATTTTGTTGGGTAATGCTTGGGAAATTCATTTGTAAAAT CTCACAATTGATTATATGAACACGAGCTACTCTCTCTTGGTTCTACCATAGTTGAATTTGGGTCTGAAATCAATTCTAAG AAAGGACTCGCAAACATCAATATTTTCATCGATAATTGACTTTTCTCATCCAGAAGATTCTGGGGTTTCCCAATGGGAAA TAAAACACTCTTAGAGTGAATAGTTTATTACTGATATAATTAAGGGTTGTCTCTGGGTAGAAAGAATCATTATTCACTTG ATAGGTTGTTTGTTACAGGTATAGAAGATTCCACTACCTCATCTACACAAGAAGTTAACCGTGCTCTCTCTCTTCTGTCA ATCAATTCATGGGGTGCATATGAGACTAAATCCCTGTCCCTAGAGCATTCCAATCAGTCCATAGCAAATGCAATGACTCT TCCTTCATCAGAATATTGGCCCTCTGATCAACTCTCATACTCGGATTGTGACAATAGCAATCGCTTTCAAGACTTTCAGC TGTTGAGCGCGCCCTTTGAGTCAGGTTTTCCTTGCAACCAGCTGGATTAACCTGAGTGTGCTTATTAAGAATGTTACATC CCCATCATATGACATTTATTTCATGTCAGTTTGTAGGGCTTATTATCTGTTGGAATATCATATAACTTAGTATCTTATTA TTTGAAGTAGTGTGTTTGACAATGCACTTCAACGAGTTTAAAGCAGGTTTATAAGCTTGTTTAACTCAACTTTAAGGCGT TTACTGATATTAGACATCTCCCATTTCATTTGCTTAGGAATCAGGAATGTTTTTAAGCTTGTGTCGGGTTACGGCTAAAG CAATGTAGATTTCTGCAACCCTTCACTTTG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0101700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTGGAATGTGAAATCTCTCGGGCAATGGGATTGGGAGCATTTCTTCTTGAATTCAAAAGCAACAGAAAATCCCAC GTCCCAACCCACTGATTGGAGTAGTGAAGCCGATCGAGAAATAAATGTCGGGGTGTTGTATCCATCAGGCAGTAGTGGTG GTTATTCTGGGTCTGAACTAATACATGCCGCTACTTCCTCAAGGAGTTCAAAATCACCTTCCAACATTTCATCATCAAAT GGGGATAGCAAGACATCTATGTTAACTCTTGAAGGTTCTCCAGATGATTCCATTGGTAAGAAAGAATTGACCAAAGGAGA GCCAGTTGACACTTCTACAGAAGCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAAAGAT TGTATTTTGAGGATGTTTGTGCAGGAATTGATTCCAAAAAGTCACCTGCTTCTGGGGTTACCATTTCATCTGGAAAGAGA TGTAAATCCAGTAATCAGAACTTACAACACACAAGCTGCCAGGTAGAAGGCTGTGGCCTTGATCTCTCATCTGCTAAAGA ATACCATCGCAAGCATAGAGTTTGTGATAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGATTGGAACGTCGATTTT GCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGATAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCAC AATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATCCATCAGCTTTGTCTTCATCGACCTATGGTATAAA TCACAAGGATGGTAGGAAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCATGGCAAGACATGCACA GCAGCAAGCTCCCCCAGACAAAAGATTTTCTTTTGAAGACTGCAAAAGCCTTCAATAAGACATCAAGTATTTCTCCTATG CTTTCTGCTGATTCCAGTCGCCTTCTTACATCCAAAGGCATAGGAACCAAGATTATTGTTCCAGGTATAGAAGATTCCAC TACCTCATCTACACAAGAAGTTAACCGTGCTCTCTCTCTTCTGTCAATCAATTCATGGGGTGCATATGAGACTAAATCCC TGTCCCTAGAGCATTCCAATCAGTCCATAGCAAATGCAATGACTCTTCCTTCATCAGAATATTGGCCCTCTGATCAACTC TCATACTCGGATTGTGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGCGCGCCCTTTGAGTCAGGTTTTCCTTG CAACCAGCTGGATTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0101700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDWNVKSLGQWDWEHFFLNSKATENPTSQPTDWSSEADREINVGVLYPSGSSGGYSGSELIHAATSSRSSKSPSNISSSN GDSKTSMLTLEGSPDDSIGKKELTKGEPVDTSTEAEPSSVSGEPLLTLKLGKRLYFEDVCAGIDSKKSPASGVTISSGKR CKSSNQNLQHTSCQVEGCGLDLSSAKEYHRKHRVCDSHSKSPKVVIAGLERRFCQQCSRFHALSEFDDNKRSCRRRLSDH NARRRKPQPEAVQLNPSALSSSTYGINHKDGRKIMSPFAFSRTATNLAWQDMHSSKLPQTKDFLLKTAKAFNKTSSISPM LSADSSRLLTSKGIGTKIIVPGIEDSTTSSTQEVNRALSLLSINSWGAYETKSLSLEHSNQSIANAMTLPSSEYWPSDQL SYSDCDNSNRFQDFQLLSAPFESGFPCNQLD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31251:SF74
28 414 387 1.8E-89 –
PANTHER
PTHR31251
28 414 387 1.8E-89 –
MobiDBLite
mobidb-lite
44 122 79 - –
MobiDBLite
mobidb-lite
49 92 44 - –
MobiDBLite
mobidb-lite
95 109 15 - –
Gene3D
G3DSA:4.10.1100.10
163 234 72 2.7E-33
IPR036893
ProSiteProfiles
PS51141
170 247 78 32.274
IPR004333
SUPERFAMILY
SSF103612
172 252 81 7.72E-39
IPR036893
Pfam
PF03110
173 246 74 1.0E-31
IPR004333

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0101700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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