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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0114000 |
| Transcript ID | LotjaGi6g1v0114000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|B1XI09|IF2_SYNP2 Translation initiation factor IF-2; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi6g1v0114000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:27300142..27302551) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAGGTTTGCTTCTAAATAAGCTGAGTGTAAACCAAATAAAAATCAAACAACTGTTTGAGGTTCCTGAAGATGTTGAA CTTGACGAGGTTGTTAGCATCCCTGGTAATGATGGTGATCATGAGGATTCAGACATTGACAATTATGTTGCTGACATTCA ATTAAATGATAGTGGGGAGGAGAGGGATGCTGAAGGTGATGGGTTTGAGAATGGTGAGATGGGGGTGGCTGAAGCATTAT TGAATGAACAAATTATGAAGATGAAGGGTCTTTCAACAGATGAAGCCATGGGTTTGGATTCTCAAGCAGCCAAAGGATAT CACAATGACCATGATATGGATGATGGATGGGAGAGTGAAGAGTTGTTGAGCATGTCTATTGGTAGTGACTCTGAAGCTGA GGATTTCATCAGAAGGTATCCACAATACCACCAACAAGACATGAAGGCTGAGTTTCAATTCAAGCTGGGAATGGAGTTTG GTTCTATCCAACAGTTCAGACAGGTAGTAAGAGACTACTCTGTGTTTAATGGGAAGAGTGTTTATATGGAGAAAAATGAC ACTGTCAGATGCAGAGTTCAATGCAAGAAGGCAGACAATTGTGACTTTGTTATACTATGCAGCAAAGTGGGGAGAAAACA TACATTCAGGATCAAGACTCTAAATGACCGCCACATATGTGGGAGAGTTTTCAACAACCCAACTGCAAATTCAAAATGGG TGGCTGATAAGATGCTTGACAAAATCAGGACAAGGAAGAAGATGAGCATGAGTGAGATTGTTGATGAAGTTAGGGTTGGA TTCTGCACTGGCATAACAAGATACAATGCATGGAAGGCTAGACAAATTGCTACTAAGATAGTGGAGGGTGATGCAGCTAA ACAATATAATATGCTGTACAGATTTAGTGCTGAGTTGAGGAGAGTTTGTTTTGGCAACACATGTAAGATGAATCTAGAGA ATCCTGCAGGGAGTATACAGCCAAGGTTTGGTAGGTTTTACATGTGCCTTGATGGATGCAAGAGAGGGTTTATTGCTGGG TGTAGGCCTTTTATTGGAGTTGATGGGTGCCATTTGAAAACCCAATTTGGTGGGATTTTGTTGTGTGCGGTGGCTAGGGA CCCTAATGATCAATACTTTCCATTGGCCTTTGTGGTGGTGGAGTCAGAGGCAAAGGACAGTTGGAACTGGTTTATTGACC TTCTGTTACAAGACATTGGTGAGGATAAGAGGTGGATATTCATATCTGACCAACAGAAGGTACTCTCTATGTCCCTTATT CACTTCCATTTTAATCTGAACTGCAATTTAGGATGATGTATTTAATATGTGCATTATGTCATTTCCATTTCCATTTCAGG GCTTGATGCAAGTGCTTGATGAGAGGAGACTGGAACACAGATTTTGCTTAAGGCACTTATATGCAAATTTTAAAAAGAAA TTTGGGGGTGGAGTGAAGATAAGAGATCTAATGATGGCAGCTGCCAAGGCTACATACCATCAGGTGTGGACTGAGAAGAT GTTGGAGTTGAGAGAGGTAGATCTGGCTGCTTACACATGGTTGCTTGCAATCCCTACAAAGTCATGGTGTAAGCATTCTT TTACCTTTTATCCCAAATGCGATGTGTTGATGAATAACCTTTCAGAGTCCTTTAATGCTACAATCCTGCTGGCTAGAGAC AAGCCCATCTTAACAATGATGGAGTGGATTAGAACTTACTGTATGGGAAGGTTTGCTACATTGATGGAGAAATTTAGGAA ATTTAGAGGGACTGTGATGCCAAAGCCTCTAAAGAGGTTGGAATGGGAGACTAAGAAAAGTGCCAGATGGGTTCCGCAAT TATGTGGGGCTGACAAGTTTGAGGTAGCCTATCTTGAGACTTGGACAGATTCGTTGTGGATCTAAGGAAGGGTACATGCA GCTGCAATTTCTGGGAGTTAGTGGGCATCCCTTGCAGACATGTTGTGGCTGCAATTTCCTACAATGGTGGATCTGTAGAA CAATATGTTGATCCATATTACAAGAGGGTAGCTTATGAAGCAACTTATAGTTGGGAGATTCATCCAGTCAATGGCCAAAA GATGTGGCCAGCAACTAATGATCCAGAAATACTACCTCCTGCATACAAGAGAGGCCCTGGAAGGCCTAAAAAATTAAGAA GGAGAGACCCCCATGAGGAACCAAATGCAGCAAGAGGACCAAGGAATAGATGCAGTAGATGTGGTGAATATGGCCACAAT GTAAGAGGTTGCAGGAACAATGCAGTGAGCACTAACTCAGGACCATGTCAACCTATGAGGAGAAGAAGAGCTAATGGACA GAATGGAACCAACACAGAAGCTGAAGTGGAAGGTGGAACAAACCAAGAAGCTGGAGTGTGAAGGTATGAAAAACGGTAGA AAGGGGGGGG
CDS sequence (LotjaGi6g1v0114000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTGGCTGAAGCATTATTGAATGAACAAATTATGAAGATGAAGGGTCTTTCAACAGATGAAGCCATGGGTTTGGA TTCTCAAGCAGCCAAAGGATATCACAATGACCATGATATGGATGATGGATGGGAGAGTGAAGAGTTGTTGAGCATGTCTA TTGGTAGTGACTCTGAAGCTGAGGATTTCATCAGAAGGTATCCACAATACCACCAACAAGACATGAAGGCTGAGTTTCAA TTCAAGCTGGGAATGGAGTTTGGTTCTATCCAACAGTTCAGACAGGTAGTAAGAGACTACTCTGTGTTTAATGGGAAGAG TGTTTATATGGAGAAAAATGACACTGTCAGATGCAGAGTTCAATGCAAGAAGGCAGACAATTGTGACTTTGTTATACTAT GCAGCAAAGTGGGGAGAAAACATACATTCAGGATCAAGACTCTAAATGACCGCCACATATGTGGGAGAGTTTTCAACAAC CCAACTGCAAATTCAAAATGGGTGGCTGATAAGATGCTTGACAAAATCAGGACAAGGAAGAAGATGAGCATGAGTGAGAT TGTTGATGAAGTTAGGGTTGGATTCTGCACTGGCATAACAAGATACAATGCATGGAAGGCTAGACAAATTGCTACTAAGA TAGTGGAGGGTGATGCAGCTAAACAATATAATATGCTGTACAGATTTAGTGCTGAGTTGAGGAGAGTTTGTTTTGGCAAC ACATGTAAGATGAATCTAGAGAATCCTGCAGGGAGTATACAGCCAAGGTTTGGTAGGTTTTACATGTGCCTTGATGGATG CAAGAGAGGGTTTATTGCTGGGTGTAGGCCTTTTATTGGAGTTGATGGGTGCCATTTGAAAACCCAATTTGGTGGGATTT TGTTGTGTGCGGTGGCTAGGGACCCTAATGATCAATACTTTCCATTGGCCTTTGTGGTGGTGGAGTCAGAGGCAAAGGAC AGTTGGAACTGGTTTATTGACCTTCTGTTACAAGACATTGGTGAGGATAAGAGGTGGATATTCATATCTGACCAACAGAA GGTACTCTCTATGTCCCTTATTCACTTCCATTTTAATCTGAACTGCAATTTAGGATGA
Protein sequence (LotjaGi6g1v0114000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVAEALLNEQIMKMKGLSTDEAMGLDSQAAKGYHNDHDMDDGWESEELLSMSIGSDSEAEDFIRRYPQYHQQDMKAEFQ FKLGMEFGSIQQFRQVVRDYSVFNGKSVYMEKNDTVRCRVQCKKADNCDFVILCSKVGRKHTFRIKTLNDRHICGRVFNN PTANSKWVADKMLDKIRTRKKMSMSEIVDEVRVGFCTGITRYNAWKARQIATKIVEGDAAKQYNMLYRFSAELRRVCFGN TCKMNLENPAGSIQPRFGRFYMCLDGCKRGFIAGCRPFIGVDGCHLKTQFGGILLCAVARDPNDQYFPLAFVVVESEAKD SWNWFIDLLLQDIGEDKRWIFISDQQKVLSMSLIHFHFNLNCNLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 78 | 353 | 276 | 3.2E-55 | – | |
| PANTHER | 78 | 353 | 276 | 3.2E-55 | – | |
| Pfam | 79 | 145 | 67 | 1.7E-7 | ||
| Pfam | 279 | 349 | 71 | 7.5E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0114000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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