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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0115000 |
| Transcript ID | LotjaGi6g1v0115000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ammonium transporter; TAIR: AT1G64780.1 ammonium transporter 1;2; Swiss-Prot: sp|Q9FVN0|AMT13_SOLLC Ammonium transporter 1 member 3; TrEMBL-Plants: tr|A0A072UXS9|A0A072UXS9_MEDTR Ammonium transporter; Found in the gene: LotjaGi6g1v0115000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:27462196..27463575) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGTTTCATGGGAGCAAAGTGTAACTTATTCCATCAATGCAATCTACCTTCTCTTCTCTGCGTACCTTGTCTTTGT GATGCAGATTGGTTTTGCCATGATATGTGCAGGTTCTGTGCGTGCCAAAAATGCCACCAACATAATGCTCACCAACGTGG TTGATGCAGTGGTAGGTAGTATCTCCTTCTACCTTTTTGGTTTTGCATTTGCATATGGCAATTCCAACCCTTTCATAGGC ACAAATTTCTTTGCTCTAGCTTACATTCCATATGAAAATTATGACTACGGTTTCTTCCTTTACCAATGGGCTTTTGCTAT AGCAGTAGCAGGCATCACAAGTGGGTCCATAGCTGAGAGAACCCAATTCACTGCCTATCTTGTATTTTCATTTTTCCTTA CCGGGTTTGTGTACCCGGTTGTGGCCCATTGGGTATGGTCTTCAAGTGGTTGGCTTTGCCCCAGTTCTAGTGACTTGTTT CTGGGCTCCGGTGCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGTGCCATTGCCGGGCTTTGGGGATCTAT CATGGAAGGCCCGCGGGTTGGCCGGTTTGATGCTTATGGAAAACCTGTTCCCCTCAGAGGCCATAGTGCAACACTTGTGG TGCTCGGGACGTTCTTGCTATGGTTTGGTTGGTTTGGGTTTAATCCGGGTTCGTTCGATCGAATCCTCGTGGCCTACCCT GGCACGTTGGGTGAGGGCAATTGGACTTCGGTAGGTCGGACAGCCGTGACAACCACATTAGCCGGCTCAAGTGCCGGAAT CATCACGTTGTTCGGCCGTCGGTTGCTAATTGGCCATTGGGATGCAATGGATGTTTGCAATGGCTTGCTTGGTGGGTTTG TTGCCATCACCTCAGGGTGCTCAGTTGTTGAGCCATGGGCTGCCATTCTCTGTGGGTTTGTCGCGGCTTGGGTCTTAATT GGGCTCAATATCTTGGCACTTAAAATGAACTATGATGACCCATTAGAGGCAGCCCAATTGCATGGAGGGTGTGGCACATG GGGTTTGTTGTTTACAGGGTTGTTTGCAAAGGAAGAATTTGTGGTTCAAGCCTATAATTCAGGGGTAGCAGTGAAAAGAC CCTATGGACTTCTACTTGGAGGTGGATGGGGATTGATTGGAGCTCAAGTGGTTGAGATTTTGGTCATCTTTGCTTGGGTT AGTGCGACAATGGGCTCTATGTTCTACATCTTGCACAAGCTTGAGATACTAAGAATTCCTTTGGATGATGAACTTGCTGG TCTTGATATCTCAATCCATGGAGGCTCTGCTTATGCTCAAGAGGATAATCATCCTCGATCTTATCAAGACTATATGCGTA TTCAGAGTAACCAATCATAG
CDS sequence (LotjaGi6g1v0115000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTTCATGGGAGCAAAGTGTAACTTATTCCATCAATGCAATCTACCTTCTCTTCTCTGCGTACCTTGTCTTTGT GATGCAGATTGGTTTTGCCATGATATGTGCAGGTTCTGTGCGTGCCAAAAATGCCACCAACATAATGCTCACCAACGTGG TTGATGCAGTGGTAGGTAGTATCTCCTTCTACCTTTTTGGTTTTGCATTTGCATATGGCAATTCCAACCCTTTCATAGGC ACAAATTTCTTTGCTCTAGCTTACATTCCATATGAAAATTATGACTACGGTTTCTTCCTTTACCAATGGGCTTTTGCTAT AGCAGTAGCAGGCATCACAAGTGGGTCCATAGCTGAGAGAACCCAATTCACTGCCTATCTTGTATTTTCATTTTTCCTTA CCGGGTTTGTGTACCCGGTTGTGGCCCATTGGGTATGGTCTTCAAGTGGTTGGCTTTGCCCCAGTTCTAGTGACTTGTTT CTGGGCTCCGGTGCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGTGCCATTGCCGGGCTTTGGGGATCTAT CATGGAAGGCCCGCGGGTTGGCCGGTTTGATGCTTATGGAAAACCTGTTCCCCTCAGAGGCCATAGTGCAACACTTGTGG TGCTCGGGACGTTCTTGCTATGGTTTGGTTGGTTTGGGTTTAATCCGGGTTCGTTCGATCGAATCCTCGTGGCCTACCCT GGCACGTTGGGTGAGGGCAATTGGACTTCGGTAGGTCGGACAGCCGTGACAACCACATTAGCCGGCTCAAGTGCCGGAAT CATCACGTTGTTCGGCCGTCGGTTGCTAATTGGCCATTGGGATGCAATGGATGTTTGCAATGGCTTGCTTGGTGGGTTTG TTGCCATCACCTCAGGGTGCTCAGTTGTTGAGCCATGGGCTGCCATTCTCTGTGGGTTTGTCGCGGCTTGGGTCTTAATT GGGCTCAATATCTTGGCACTTAAAATGAACTATGATGACCCATTAGAGGCAGCCCAATTGCATGGAGGGTGTGGCACATG GGGTTTGTTGTTTACAGGGTTGTTTGCAAAGGAAGAATTTGTGGTTCAAGCCTATAATTCAGGGGTAGCAGTGAAAAGAC CCTATGGACTTCTACTTGGAGGTGGATGGGGATTGATTGGAGCTCAAGTGGTTGAGATTTTGGTCATCTTTGCTTGGGTT AGTGCGACAATGGGCTCTATGTTCTACATCTTGCACAAGCTTGAGATACTAAGAATTCCTTTGGATGATGAACTTGCTGG TCTTGATATCTCAATCCATGGAGGCTCTGCTTATGCTCAAGAGGATAATCATCCTCGATCTTATCAAGACTATATGCGTA TTCAGAGTAACCAATCATAG
Protein sequence (LotjaGi6g1v0115000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSWEQSVTYSINAIYLLFSAYLVFVMQIGFAMICAGSVRAKNATNIMLTNVVDAVVGSISFYLFGFAFAYGNSNPFIG TNFFALAYIPYENYDYGFFLYQWAFAIAVAGITSGSIAERTQFTAYLVFSFFLTGFVYPVVAHWVWSSSGWLCPSSSDLF LGSGAIDFAGSGVVHLVGAIAGLWGSIMEGPRVGRFDAYGKPVPLRGHSATLVVLGTFLLWFGWFGFNPGSFDRILVAYP GTLGEGNWTSVGRTAVTTTLAGSSAGIITLFGRRLLIGHWDAMDVCNGLLGGFVAITSGCSVVEPWAAILCGFVAAWVLI GLNILALKMNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVVQAYNSGVAVKRPYGLLLGGGWGLIGAQVVEILVIFAWV SATMGSMFYILHKLEILRIPLDDELAGLDISIHGGSAYAQEDNHPRSYQDYMRIQSNQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 457 | 457 | 1.4E-250 | – | |
| PANTHER | 1 | 457 | 457 | 1.4E-250 | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| Gene3D | 2 | 458 | 457 | 3.8E-139 | ||
| SUPERFAMILY | 11 | 419 | 409 | 3.53E-100 | – | |
| TIGRFAM | 14 | 438 | 425 | 1.6E-130 | ||
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 15 | 37 | 23 | - | – | |
| Pfam | 17 | 438 | 422 | 1.7E-122 | ||
| Phobius | 38 | 48 | 11 | - | – | |
| Phobius | 49 | 72 | 24 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 73 | 97 | 25 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 98 | 118 | 21 | - | – | |
| Phobius | 119 | 124 | 6 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 125 | 146 | 22 | - | – | |
| Phobius | 147 | 165 | 19 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 166 | 187 | 22 | - | – | |
| ProSitePatterns | 167 | 192 | 26 | - | ||
| Phobius | 188 | 207 | 20 | - | – | |
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 208 | 227 | 20 | - | – | |
| Phobius | 228 | 305 | 78 | - | – | |
| TMHMM | 255 | 277 | 23 | - | – | |
| TMHMM | 305 | 327 | 23 | - | – | |
| Phobius | 306 | 326 | 21 | - | – | |
| Phobius | 327 | 337 | 11 | - | – | |
| TMHMM | 337 | 356 | 20 | - | – | |
| Phobius | 338 | 356 | 19 | - | – | |
| Phobius | 357 | 382 | 26 | - | – | |
| TMHMM | 377 | 399 | 23 | - | – | |
| Phobius | 383 | 411 | 29 | - | – | |
| Phobius | 412 | 459 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ammonium transmembrane transporter activity | Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. | ||
| Biological process | Ammonium transport | The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Ammonium transmembrane transport | The process in which ammonium is transported across a membrane. Ammonium is the cation NH4+. |
Expression pattern of LotjaGi6g1v0115000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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