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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0126100 |
| Transcript ID | LotjaGi6g1v0126100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G30100.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q0WNN7|PP176_ARATH Pentatricopeptide repeat-containing protein At2g30100, chloroplastic; TrEMBL-Plants: tr|V7BLH6|V7BLH6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0126100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:32575468..32579870) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGAATCTATATCTATATAAATTAAAGAACAAATCCACAATCAGCGTCCAATGGTTGCTTCGCATTTTATCTTGGATT AAGCGGTGTTACGGTGTGAACTCTGCAGTGGCGGTTGATACACGTATTCGCACCTTAAAGAAATAGAGTCCTCTAACCGC TGCAAATTGCAAGTTTTGCTGTCTCTGTCTTTTCCAACCCGATCATTTTATTGAATTTTTATGGTAATGATAATTTTCCA TCTATTTTCTTTCTCTCATTGAAGTCACTTTCTTTCCTCTTAGTTGGATGGATTAAATTTTAGCAGCATCTCGTTTGGAT GCTGAGATAATTTGTCTTCTTTTTCCCTTCTGTTTTTGGAGTTTCTGGGGTTTAATTTTGACTTGAAATTCACTATACCC GAAAACAAAGATTCAATTTTCCCCCATCTTTCTCTGTTCTAGGAGTGGATGGACACTTCCTTGTGCCCCTGAATTGATTT GATTGAAGTATAGAAATGGCATATGCACATGGGTTTACTCCAGTATTCAAATTTGGTTTTGTGTTTTCTTCACTGTCTTC ACCAAAACAAGGGTACCCTTTGGCGTTTCCTGCATCAAAGTGTCGATTTTCACTGAAACTCTGTGATGGGGTTTCAGCTA AGGTTTGTAAGTTTCAATATCCTACCTTTTTTGCGGCAAAACCCAGTTTAATCAGAGGTTGTAGGAGGATGAAATCGGTG GAACTGGACCAGTTTGTGACCAGTGATGATGAGGAAGAAGAAGAAGAAGAGGAAATGGGTGATGGGTTCTTTGAGGCAAT TGAGGAGCTTGAGAGGATGACAAGGGAACCTTCTGATATTCTTGAAGAGATGAATGAACGTCTCTCTGCGAGGGAGCTGC AGCTCGTGTTGGTTTATTTCTCGCAGGATGGGAGGGACTCGTGGTGTGCTTTGGAGGTGTTTGATTGGCTCAGGAAGGAG AACAGGGTGGACAAGGAGACTATGGAGCTTATGGTTGCTATCATGTGTGGGTGGGTGAAGAAGTTGATTCAGGAGCAGCA TGGTGTTGGTGATGTTGTTGACTTGCTTGTGGACATGGATTGTGTGGGCTTGAGGCCTGGTTTTAGCATGGTTGATAAGG TGATTTCCTTGTATTGGGAGATGGGGGAGAAGGAAGGTGCGGCCTCTTTCGTGGAAGAGGTTTTGAGGCGCGGGATTTCT CGTGCTGATGATGATCCAGAAGGGCATAAAGGAGGGCCAACTGGGTATCTTGCTTGGAAGATGATGGTAAGCATTTGCTA TTTGATGTCAAGTTCTTTATTTTTATTTTTTTTTACTTGGTTGTTGAATTAGCTCTTTTTTTAAACTTTGAATCTGGTAT TGAATAACATCTTGGTGGAATGAGTCTGTTTAATGAGTTGGTCATCATTTTGTCCCCTTGACTTAGATGTTTTGTTGCTA GGATGATAGGTACTCCTAGTTAGTTAGTTAGTTGAGTTAGTCAGGGTGTTAGTAGTTTAGTTAGTGGAGAGAGCCAGCTA TAATGTTGGGGAGAGAATATTATAAACAGGAGAGAGCTAAGCGGGATTATCATCTTTGGGGATCATTATGATTGGAAATT GGGAGAGGCCCGGTTCCCTTGAATAACCTGGAAATTCATAGTGTTATTCCAATAAAATTAGTTTTCTTTGTTCAGTGGAT GGTACTTATCTACTGGAAGAATTAGTTAGTTAACTCGTAAGTTAATAGAATAATAGTAGTTAGTTAGTTATTGGGTTAGT AAGGCATGTTGCCTATAAATAGGAAGAGGGGCTGAGAGGGAAGGGGTGTCTAGTCATTTGAGAAAGAGTAGGGCCTTTGG GCATTACGAGGCTTAGCAGATCCTTGAAAATGTGCTACTTTGTATCAGTAATCAAGGGAGGATTTCCCTATTTTCAGCAG TCAAGATGCTAGTTCCTATCAAGTACTAGGCTAGGATCTCACTGCTCTTCTTCATTGATCACAGTTGTAGTCAATCCCAT AGTTTCAGCAATAGCTTGGAAGTCAACCATATCTCTTTTCCAGAACAGTTGCAAACTCCCTTGTCACTCTTTGATGTGAG TTCTGGTTAGTTAGTAGTTTAGTTGCTTATCTTAAAAAAGATTTATTAGTTTAGTTAGTTGAGAGAGTTAGTTATAGTAG GGGAGTGAAAGGAATATTATAAATAAGAGAGAGCTAAGGGGGATTGTCATCTTTGGGGATCACTGTAATTGGGAATTGGG AATTGGGAGAGGCCAAGTTCTCTCAAATAACCTGGAAATTCTTAGTGTTACTTTTAAAATCAGTTTACTTTCTTCTTCAA TGGCTGGTGCCTTTCATGGGAGCTGTGTTCTTTTTTACTTCGACTGATTTGTATTCGTTGTCTAATATTGCTTCACGTTG AGTCAAATTTGATGACATAGTTGCTGGTGAGTTGTCATTATTATTATGGTTAGTCTATCTTGTGTACTCTCAAGGAGCTG AATGCCTCCCCACCCTCTCCCTCCCTGTCTTCCATTATTAGAAATCTTTTAAACAAGGGCTTGGGCAGCATTTTTTCCTT CCCTGCCCCTCATTATCCCCATTCTCCATCCAAGCACAGAATTGGAGCTTTTGAATTATTAACTTCAGTGCTTCTTGGAT ACTGGAAATGCTTGTTTTGGTTGTTTTTTGGTTAATCTTGATTAGGTCGAATATACTACCTTGATTTTGAAAACTCAAAC TTGTAAGTCGTATTTGCTGCTAGAGTACGGTCTAACTTGTAGCTGACTTTGGTGTTAGCAATAGCATCTTTGACCTGCGA TATTTCGTGTGCGAGGTCAATTTATTCTTTCTTGGCCCGGGAATGGAACTTCTTTAGATTTTGCTGAGCGCAAATTGTGG AATAACATTAAGATAGCCGAGAGCGTGTTTGGGTAGATTTTGAAAGATGGTGCACAAGTTCAAATGCTCCATTTTATGAA GTTGAATGTATCTTGGACACACATCCAACTGAAATACAAATATGTACCTAATGTGTAGGACCCTTGTATATCACTCTTCC CGATACATGTTGCAGTTTCATTTAAAAACTTTCCTTTCATGTGTCTATTTGAATGATGAGTTTCTGTGTAAATTTTATTT TTTCCCAGGCTGACGGCGAGTACAAAAGTGCTGTTAGATTGGTAATTCGTTTTAGAGAAGCTGGCTTGAAGCCAGAGGTC TACAGCTACCTTGTTGCAATGACTGCTGTGGTTAAGGAGCTGAATGAATTTGCCAAAGCACTGCGCAAGTTGAAAACTTT CGTGAAGGCTGGATCGGTAGCTGCATTAGATCTTGAAGATGTTGAGCTTGCAGAGAAGTATCAATCCGAACTTCTAGCTG ACGGAGTGCGCTTGTCCAAATGGGTGATTCAAGATGGCAGCCCATCACTCCATGGAGTAATTCATGAGAGGCTCCTTGCG ATGTACATTTGTGCTGGTCACGGAATCGAGGCTGAGAGGCAGTTGTGGGAGATGAAGCTTGTAGGCAAGGAGGCTGATGC AGATCTCTACGACATTGTCCTCGCCATTTGCGCTTCGCAGAAGGAGGCGGCTGCCACGGCAAGGTTGCTGACCCGGGTAG AGGTTGCGAGCTCCCCGCAGAAGAAGAAAAGTCTGTCCTGGTTGTTAAGAGGCTATATTAAAGGTGGTCATTTCAATGAG GCAGCAGAGACTGTCATGAAAATGGTTGGAATGGGGTTGTATCCTGAGTATTTGGATAGGACAGCCGTACTGCAAGGATT AAGGAAAAGGATTCAGCACCATGGAAATTTAGATGCTTATATCAAGCTCTGTAAGTCCCTCTCTGATGCAAGTCTCATCG GACCATGTCTTGTTTATTTGTATATAAGAAAATATAAGCTTTGGGTTGTGAAAATGATCTGAAAAAATGAGCTGGAACCA TGCCAATTTTCCAACCTGTGGTTTCGGAAGCATAGTTGTATATCTCTGGCACTGATTTTCTTGGTGCTTGCTTACATGTA TAAATTTGTATAGGTTTAATGGACCAATTCTAGTGTCTAGAGCAATGTTGTAGTGAGTATGTATGTATGTGCACACAAAC ACCATCTTCATATACCATTGGATATATTATTATTTTAAATAATGGATATGATTAATTACTGGTTACCGAAAATTGAGCTT CTTGGTTCATTTTTACTTATGAACATCAATTTGCTCCTCTTCCTTCCTTATAGCAGATTAATAGTAATAAGTTGGGCAGA ATACCAGGTCAAGAACCTATTGCTTATATCAATTTTTTTCAAGAACCTATTGATTGGACCCATTTGAAATTGAATTGAAA TGAGGTATGAAAGAATTCATTGATCTGAAAGCTTTAGAATTTTTTGCAACCCGTCTGCCGATTTTAGTTAGGCTTGATGT TTC
CDS sequence (LotjaGi6g1v0126100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATATGCACATGGGTTTACTCCAGTATTCAAATTTGGTTTTGTGTTTTCTTCACTGTCTTCACCAAAACAAGGGTA CCCTTTGGCGTTTCCTGCATCAAAGTGTCGATTTTCACTGAAACTCTGTGATGGGGTTTCAGCTAAGGTTTGTAAGTTTC AATATCCTACCTTTTTTGCGGCAAAACCCAGTTTAATCAGAGGTTGTAGGAGGATGAAATCGGTGGAACTGGACCAGTTT GTGACCAGTGATGATGAGGAAGAAGAAGAAGAAGAGGAAATGGGTGATGGGTTCTTTGAGGCAATTGAGGAGCTTGAGAG GATGACAAGGGAACCTTCTGATATTCTTGAAGAGATGAATGAACGTCTCTCTGCGAGGGAGCTGCAGCTCGTGTTGGTTT ATTTCTCGCAGGATGGGAGGGACTCGTGGTGTGCTTTGGAGGTGTTTGATTGGCTCAGGAAGGAGAACAGGGTGGACAAG GAGACTATGGAGCTTATGGTTGCTATCATGTGTGGGTGGGTGAAGAAGTTGATTCAGGAGCAGCATGGTGTTGGTGATGT TGTTGACTTGCTTGTGGACATGGATTGTGTGGGCTTGAGGCCTGGTTTTAGCATGGTTGATAAGGTGATTTCCTTGTATT GGGAGATGGGGGAGAAGGAAGGTGCGGCCTCTTTCGTGGAAGAGGTTTTGAGGCGCGGGATTTCTCGTGCTGATGATGAT CCAGAAGGGCATAAAGGAGGGCCAACTGGGTATCTTGCTTGGAAGATGATGGCTGACGGCGAGTACAAAAGTGCTGTTAG ATTGGTAATTCGTTTTAGAGAAGCTGGCTTGAAGCCAGAGGTCTACAGCTACCTTGTTGCAATGACTGCTGTGGTTAAGG AGCTGAATGAATTTGCCAAAGCACTGCGCAAGTTGAAAACTTTCGTGAAGGCTGGATCGGTAGCTGCATTAGATCTTGAA GATGTTGAGCTTGCAGAGAAGTATCAATCCGAACTTCTAGCTGACGGAGTGCGCTTGTCCAAATGGGTGATTCAAGATGG CAGCCCATCACTCCATGGAGTAATTCATGAGAGGCTCCTTGCGATGTACATTTGTGCTGGTCACGGAATCGAGGCTGAGA GGCAGTTGTGGGAGATGAAGCTTGTAGGCAAGGAGGCTGATGCAGATCTCTACGACATTGTCCTCGCCATTTGCGCTTCG CAGAAGGAGGCGGCTGCCACGGCAAGGTTGCTGACCCGGGTAGAGGTTGCGAGCTCCCCGCAGAAGAAGAAAAGTCTGTC CTGGTTGTTAAGAGGCTATATTAAAGGTGGTCATTTCAATGAGGCAGCAGAGACTGTCATGAAAATGGTTGGAATGGGGT TGTATCCTGAGTATTTGGATAGGACAGCCGTACTGCAAGGATTAAGGAAAAGGATTCAGCACCATGGAAATTTAGATGCT TATATCAAGCTCTGTAAGTCCCTCTCTGATGCAAGTCTCATCGGACCATGTCTTGTTTATTTGTATATAAGAAAATATAA GCTTTGGGTTGTGAAAATGATCTGA
Protein sequence (LotjaGi6g1v0126100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYAHGFTPVFKFGFVFSSLSSPKQGYPLAFPASKCRFSLKLCDGVSAKVCKFQYPTFFAAKPSLIRGCRRMKSVELDQF VTSDDEEEEEEEEMGDGFFEAIEELERMTREPSDILEEMNERLSARELQLVLVYFSQDGRDSWCALEVFDWLRKENRVDK ETMELMVAIMCGWVKKLIQEQHGVGDVVDLLVDMDCVGLRPGFSMVDKVISLYWEMGEKEGAASFVEEVLRRGISRADDD PEGHKGGPTGYLAWKMMADGEYKSAVRLVIRFREAGLKPEVYSYLVAMTAVVKELNEFAKALRKLKTFVKAGSVAALDLE DVELAEKYQSELLADGVRLSKWVIQDGSPSLHGVIHERLLAMYICAGHGIEAERQLWEMKLVGKEADADLYDIVLAICAS QKEAAATARLLTRVEVASSPQKKKSLSWLLRGYIKGGHFNEAAETVMKMVGMGLYPEYLDRTAVLQGLRKRIQHHGNLDA YIKLCKSLSDASLIGPCLVYLYIRKYKLWVVKMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 514 | 514 | 2.1E-262 | – | |
| Gene3D | 98 | 239 | 142 | 1.4E-5 | ||
| ProSiteProfiles | 202 | 236 | 35 | 5.842 | ||
| Gene3D | 255 | 495 | 241 | 1.8E-9 | ||
| ProSiteProfiles | 280 | 315 | 36 | 5.053 | ||
| ProSiteProfiles | 422 | 456 | 35 | 8.594 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0126100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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