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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0134900 |
| Transcript ID | LotjaGi6g1v0134900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proliferating cell nuclear antigen; TAIR: AT2G29570.1 proliferating cell nuclear antigen 2; Swiss-Prot: sp|O82134|PCNA_PEA Proliferating cell nuclear antigen; TrEMBL-Plants: tr|I3SD25|I3SD25_LOTJA Proliferating cell nuclear antigen; Found in the gene: LotjaGi6g1v0134900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38958042..38960265) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCCCAAACCAGCTTCCAGAACTTTCCACTATTTATACCCTTTTCCCTCCCATCTCTCCTACTCTCATTTCATTTTCC CACCAATTTTCCCGAGAAAATCGAAACCCTCAAAACCCTAGCTCCGTGAGAAGAAACCGCCACCGCCAGATCAAGATGTT GGAACTCCGTTTGGTTCAAGGTTCTCTGCTGAAGAAGGTTCTGGAGTCAATCAAGGAGCTGGTCAACGATGCCAACTTCG ATTGCTCCACCACCGGATTCTCCCTCCAGGCCATGGACTCCAGCCACGTCGCACTGGTGGCGCTGCTGCTCCGTTCGGAG GGGTTTGAACACTACCGCTGTGACCGCAACATTTCCATGGGTATGAATCTCAGCAACATGTCTAAGATGCTCAAATGCGC TGGAAATGATGATATCATCACCATCAAGGCCGATGATGGCAGTGACACTGTCACCTTCATGTTTGAAAGCCCTAGTAAGT TTTGTTTTCCCCAATTTTTTATTTTCATTTTTGGAATTTCAGTGTTAGGGTTTGGTGTTTATAGCATTTTGCGATTTTGG GTTTTGTTTGAGTATTAGGATTCTGTGAATCTTGCGATTTTGGGTTTCTTGAAGACTGTTAGGATTCTTGATTATACATT CGTAGCTATGTTCATTTGAAGAGTTTTTCTATTTTGCTATCACTTTAATTTGATATGCTTTTAGGTTTTGTTTGAGTATT AGGATTCTGTGATGAATCTTTCTTTTCTCACGTACGTTCAATGTAGCTAGCTATGTCCTATTTTGAGAAATGATCTCTTT AGAATAGTAACTGTGCTTTGGGAATTTTAGAATGCATTGATGTTTGTAGCATGATTAGATTGTCCAGGACTTACTAAATG TTAGGGTTTTGGTGTTTAATTTTGCTGGTGTAAGGTTAATGTGTAGCTGGTTCATGTTTTAGAGTTGGGATTATATTTCT TGGGTTTCTTGTCAATTTAGCATATGTAATTTCTTAGCAGTTTAAGATGAGGTCTAATTTGAATGTTTGCATGATTTGTC ATTTTTCTTGTCTGACTTGTTTTTGTTTCATGTCTTAAAGCACAAGACAAGATTTCTGATTTTGAAATGAAGCTGATGGA CATTGATAGTGAGCACCTTGGGATTCCAGAGGCAGAATACCATGCCATTGTTAGGATGCCATCTGCTGAGTTTGCTAGGA TCTGCAAAGATCTCAGTAGCATTGGTGACACTGGTAACCATTTCTGCTCATTGATATTCTGAGGTTTTCTATTTCTTGAC TGTTTTTGTTCTAAAATTTCTCATTTTGTAATGTATGTTGTTAGTGGTCATTTCTGTTACCAAGGAAGGTGTGAAGTTTT CCACCAAAGGAGACATTGGGACTGCAAATATAGTCTGTAGGCAGAATACTTCTGTGGACAAGGTAAGATTGAATGAAATG TTTATGTTTTCATTCTTCATGTTTGATTGTGGAATTGCATACTGACTGATGTTTTTACATGAATGCATTTGTGGGTTGAT ATTACAGCCTGAAGAAGCCACAGTCATAGAGATGAATGAGCCTGTCTCATTGACCTTTGCTTTGCGATACATGAACTCAT TCACAAAAGCAACACCATTATCTAGTACTGTCACCATTAGCCTGTCAAGTGAGCTTCCAGTTGTTGTTGAGTACAAGATT GCAGAGATGGGATATGTTCGGTTCTACTTGGCTCCCAAGATAGAGGAGGAGGAAGAAGAGACTAAACCTCAAGTTTAGTT TTGGTGTTGCATTGTTTGTTTCTGAATTTGGTTGTAGTTGTAGGATGCTTTTATACATTTCCTATCCAGTACATGTAACT GTTTTTCCCTAAATCAATGGTCAATTTCTGAATTTTGGGGAGAGCCATATTGGATCCTGCACTATTTTGCCTTATTGTTG CTTAGAACCATCTTACACAAGGGCCTTGTATTTTTCATCTTGATGCATTACTTTTGTAGTCTTCATTAATCTGAACAACT TTTTAATGAAATGATAAATATAAGTAGTCATTGGTAAATAGTTAGGCGTAATGTGCAAAATTAACATAGCATCCTTCAAT ATTGTTGCTTTGAAACCATGGCCACACCTGTACTTAACAGAAGCTCTATCCTCACTTGAAGGAGCCATATTGGTTCCTGC ACTATTTTGCCTTATTGTTGCTTAGAACCATCATACACAATGGCCTTGTATTTTTCATCTTGAG
CDS sequence (LotjaGi6g1v0134900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAACTCCGTTTGGTTCAAGGTTCTCTGCTGAAGAAGGTTCTGGAGTCAATCAAGGAGCTGGTCAACGATGCCAA CTTCGATTGCTCCACCACCGGATTCTCCCTCCAGGCCATGGACTCCAGCCACGTCGCACTGGTGGCGCTGCTGCTCCGTT CGGAGGGGTTTGAACACTACCGCTGTGACCGCAACATTTCCATGGGTATGAATCTCAGCAACATGTCTAAGATGCTCAAA TGCGCTGGAAATGATGATATCATCACCATCAAGGCCGATGATGGCAGTGACACTGTCACCTTCATGTTTGAAAGCCCTAC ACAAGACAAGATTTCTGATTTTGAAATGAAGCTGATGGACATTGATAGTGAGCACCTTGGGATTCCAGAGGCAGAATACC ATGCCATTGTTAGGATGCCATCTGCTGAGTTTGCTAGGATCTGCAAAGATCTCAGTAGCATTGGTGACACTGTGGTCATT TCTGTTACCAAGGAAGGTGTGAAGTTTTCCACCAAAGGAGACATTGGGACTGCAAATATAGTCTGTAGGCAGAATACTTC TGTGGACAAGCCTGAAGAAGCCACAGTCATAGAGATGAATGAGCCTGTCTCATTGACCTTTGCTTTGCGATACATGAACT CATTCACAAAAGCAACACCATTATCTAGTACTGTCACCATTAGCCTGTCAAGTGAGCTTCCAGTTGTTGTTGAGTACAAG ATTGCAGAGATGGGATATGTTCGGTTCTACTTGGCTCCCAAGATAGAGGAGGAGGAAGAAGAGACTAAACCTCAAGTTTA G
Protein sequence (LotjaGi6g1v0134900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLELRLVQGSLLKKVLESIKELVNDANFDCSTTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLSNMSKMLK CAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVI SVTKEGVKFSTKGDIGTANIVCRQNTSVDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYK IAEMGYVRFYLAPKIEEEEEETKPQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 261 | 261 | 1.9E-179 | – | |
| TIGRFAM | 1 | 259 | 259 | 2.4E-129 | ||
| Pfam | 1 | 125 | 125 | 4.0E-58 | ||
| PANTHER | 1 | 261 | 261 | 1.9E-179 | – | |
| SUPERFAMILY | 1 | 126 | 126 | 8.38E-47 | – | |
| Gene3D | 1 | 163 | 163 | 2.5E-78 | – | |
| Hamap | 2 | 255 | 254 | 20.25 | ||
| CDD | 5 | 255 | 251 | 5.45135E-104 | – | |
| PRINTS | 10 | 29 | 20 | 4.0E-71 | ||
| ProSitePatterns | 34 | 57 | 24 | - | ||
| PRINTS | 34 | 52 | 19 | 4.0E-71 | ||
| PRINTS | 56 | 80 | 25 | 4.0E-71 | ||
| ProSitePatterns | 61 | 79 | 19 | - | ||
| PRINTS | 110 | 132 | 23 | 4.0E-71 | ||
| SUPERFAMILY | 127 | 255 | 129 | 1.22E-44 | – | |
| Pfam | 127 | 254 | 128 | 2.6E-61 | ||
| Gene3D | 165 | 252 | 88 | 1.7E-36 | – | |
| PRINTS | 203 | 217 | 15 | 4.0E-71 | ||
| PRINTS | 241 | 258 | 18 | 4.0E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of DNA replication | Any process that modulates the frequency, rate or extent of DNA replication. | ||
| Molecular function | DNA polymerase processivity factor activity | An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it. |
Expression pattern of LotjaGi6g1v0134900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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