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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0135600 |
| Transcript ID | LotjaGi6g1v0135600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ycf20-like protein; TAIR: AT5G43050.1 YCF20-like protein (DUF565); Swiss-Prot: sp|Q1XDS2|YCF20_PYRYE Uncharacterized protein ycf20; TrEMBL-Plants: tr|V7BQ42|V7BQ42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0135600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:39127330..39132568) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTGAACCCCTGAAATTTGAAAATTGCACCCAGGTCCCAGTCAACACTCAGTCACTCATTCCTCACTCCTCTCTCTC TCTCTCTTCCTCACGCACTCACTCTCTCACGGTCTCAACTCTCACCTTCACGATCCAGAGTTCCAGACCACCACCGGCCA CCAGCCCACCACCACGGTACCACTCATTGATTCACGGTTCGACTGTTTCAGTGTTCACTCTTTTCTCTCTCTCTCTCAAC GCTGCAACCCACCAGGCGGCAGCCACAGCCCACCAACGCCACCAGTCCACCACCACCGCCCAACGCACCACCACTCTCTC TCTCTGCTGTTGTTGAAGACTTGAAGCTTGAAGGTTAGTTAGAAATTGAAAACCCCAAATTGAAAAACTAAACCCCCAAA TTGAAAACCCCAAATTGAAAAACCCCAATACTTTTTATCAAATCATTGTGCTGCTGTTGAAGCAATCTGAAAGTTAGGAA TTGAGTTTGAGTTTAGTTAGTTAGGAATTGTGTATATCATATATGAAGGGAATTGAGTTTAGTTTATTTAGCATAAGCTT GTTGCCCTGATGTAGGAATTGAGTTATAAGCTTGTTGTCTTGCTTTTCCTTTTGCTGAATTTAGTTTGTGTATATGAAAT TGAATTGAAATTAGACTGGGAAATAAGCTTGTTGTCTTGGTTTGAGATTGGAAATTTGGAATGTGAAGGGAAATGAACGC GGGTAATTGCTCATTCCTTTGCTTTTCTTTGTTTCTGTTTTCTGTTTTCTCATTCTCGAGTGTTCTTTGTTTTTCCTTTT TTTAAGGTTTGTAATTTTTAAGGTTGTTGCTTATAAGTTATACGTTCTTGCTTTGCTCAACTGTAGTGTGAATCTCCAAC CACTGTTAATTTCAACTGTCTGGTACCTGAGTGAATCTATACTGATTTTTTGGGGGTTGGAATTTGAACAATGCTTTTTC TGTTTTGTTTTCTCCCCATTGAATTAGGAGGAAATTTCACCAATTTATCATCAGATTCTAATTTTTCAATTCCTAGTAAT TAAATTAAACCCCTTTTGGGGCTGTTTTTCATGTGGGGGGTTCTTTGATTTTGTTTTTTAAACTGTATTAGTGGGTGAAT TGGTCTTTCTTGTTATGAAAATCTCTGCTGAACCATGAAACAGTTTGTGGCTCTGCTCTTTGGTAAATGATGTATAGTTA AACAAAGGAAACTTGAATTATCATCTGGTGAAATTTATGAATGCAGTACCTAGTAAATGGGAGCACTTTCATAAATTCTT GTATTGAAATGTTATCTACATTTTCATGTTGACAAATCATGATATGCTAAGCATCAAATTAAGCTGAAAGCTTCCCTGGG TTGACCCTTTTGTTCTAGTTTGCTTTTTGGTATTTTATATTACCGAGTATTTCATGAGCTTCATCATGCCTTGTGCTTGT GCAACTCTAAGAGGCTATAATGAATTTGCAGGATGGACTAATAGGCTTGTCTATTTAATCTTTGAGGGAAGAAAAAGCTC TAATAACACCAGATTTTTGTTCCACCAGATTTTGAACCCCCTGACCCCGGGGTCCTGGATCCGCCACTGAAGGCAAGTAC CTCATTACTTCAGACTAAAGACTCACTCATATCTTGACATTCCACACATTCTAATGTTTAAGATGTTTTCATAGTGGAGG CAATTGATTTTTATTTTTTTTGAAATTGGAGGCAATTGATGCTATGGAATAATATGATTGGTTGAATATTTTGGCTCATT TTCAACTAAGTCCTACGAATATGAGAATAAGGATTTTTAATTAAAATAACATCTCAAATTATCATATAATGTAAGCTACA TAATAATATCATATGTGCATGATTCTATTCAGGTTTGTCAACAACCCTACATACTCGTGAAGACAACACTCCTATCTACG CAACCTTAATCCTTATTTCTCTTTATTCTTTTTTTTTTGGAAAGGCTTATTTGTCTTTGTTCTTGCTCTTGAGCGTCAGA TGCCTCTTTGGTGACAATATGATTGCAAGAGACAAGAAGAACAAGGTCTTTCCATGAAAGAACAATCCAACAGAGCAATC TTACCACCCGACCCGACCTACGTCCTATACTCAGGTTCAATTTTTCCTTACCCCAAATATTTTTTCTATTATTATTGTTA GATTAATTGATGAATTTCAATTCAGTTAAATTCTACCATTTCAAAATTTCCATTAAGTCAGTTACTTATTGAGAATTTGA GATTTAGGTTTATTTATATGAATAGTTGAGACATAGATTTTTTTGGGCTCATATTATATCTCTTTTGGTCCATGCATGTT ATTGGACCTGGCTCCTCCTATAAGCTATGGGGCCCAAACTACTAAAACCCCTTATGCTTTGAATTAGGGAATTACTATTT TCACCACTCTAACTTTCTCTCTACACCACCCAACATTTTTAATTTCCAAAAACTAAAAAAAAAAAAACCAAACCACAAGT TGTGGTCTCACATCTCACTGGACTTGAAGCTGGTTCAACTTTCTCTCTCTACTCTGGTTCTGGCCCTCTCTGTCTCTCCT CGCAGGTGATTCTAGCTTCTGGGCAATTAGGTGAAGTTCACAAAATCGTATCTTTCATTCATTGGTCACTCTTGTGGCCA CGTTTATTGATAAGTGTAGTTTGCAATTGGTAGAATAATTTATGCTCAAGAACTGTTTGATAAAATGTCTCAGAGAAACC TTGTTTGGTATCTCCTGAACAATGTGGTTGAACATGACAACTAGTTGCTTGACATAATGCCTGAAAGATTTACAACAAAT TTTCTGTAATGATCAACATGATTATGACAGATTCATCTAATTGGTGGCTTTTGGTTTGAAATTATTGATATGATAGAATT CATCTGAAAGGAGGCATTTCATGCCTATTGACTTCTTTACCACTGTTTCATTTTAGCTTGGTAAACGTAGTTTTACACAT GGATATTGCTATGAGAAGCATGACCATTTGAATACTGAGTGTATTGCGGCACCTCCCTTATTCATGTCACTTCTTTACTT GTGTATCCAGTTTGAACCTTGTTTCTTTTGTTCAAATGTGAAAATGTTTGGCTAGATTGACCTCTGGTCGTTATCTTTCT GCATATTAACTTAAGTTGTTTTCCTTAACCTGTACATTTATTTTCTTGGTGTATTTAGTTTTATATTTCAGTATTTATTT TGATTAGTTCAGACGCTCTTCTATAACTTAATATCAAATATTGTGATATCTATTTGACGAAAAAAATGTAGTGTAATTAT CTCTCGGTGTGATGGTGCCTTCTGCACCTTCAAGGGCACAAATAAGGAGAGGTTAGGTAATGCTGTTGCAGATATTTTCC TCTGTCTACAATTCCTTGTAATCAAATCAACTCATCAATGGCCTCTTATTGAAAGTTGTCTCAAATGTGCTTACCACTAG TTTTATAGATTTTTTATTAGATTTTACTTCATGTAAAACAGAAAGGTTCTGATAATCCAAGAGACACTTTCTTTCGTTAG AACTACATGGAGTAGGTAAATTGAAATACCCCTCTGTGTTGCTGGCATATGCTATATGTTTAGGGAAATTTAACAGTGAA TGATCATGCATCTGTAAATAATTGCTAATATGATGCAAATTGCCTTTAGTAAAAAACTATGGACCACTTTTCAAGTTCCA CTGACAATACTGTATGAATAATCAATTTTGTAATCCATATTAAACTCCTGAAGTCCTGATACTACTATGGTTGCTCTACT GAGTTGATAATTCTAAATTGTACCTGTGATGTTCTTGATGGTATGACTTTTTATGTCCTGACATGTATATATTTACCAAC TCTCCTAGGCTGGGGTTCTTTCTGGTTTGACCATACTAATTCTTGATAAGAAGAAAGAAAGACTAATGGCACAATCATTG AGCTTGATCTCTGGAGGCCTCGGATTTCGTCCAATTCCGATAACCAAAGTCAGTGTATCAGGAAGGTTTACACCCAGATC TTCAGCAGTGCTTCGCATTCGGGCTGTGCAGGAGAATGGTGGACCGCGTAGACTAGTGGACATAGTCAGGCTCATTCCTG AGCTCTCAAAGAACTACTTTAAAAGTCCTTCTCGCAGGGCCCTATTTGGCGGAATCTCATTGCTTGGTGGATTTTATGTT GCACAAACAATCTCTCTGTCTTTTGGAGCTTTAGGAGTCAATGATGTTATTGCAGCAGTTTTATGTGTTCTTCTTACAGA GTATGTTACAAAGTTTTATTACAGCCGGCCAAAAGTTACTTTCCCAATTGCTCTTCTCAACAACTTCAAAATGGGTTTCA CCTATGGACTCTTCATTGATGCATTTAAGCTTGCCAGTTGATTCTTTAACATCTAAGTGCAACTTCTCAAGATTCCTGAC AAACCTGACGACTCTTTGAGATCGGGTTGGTTGTGTTCGATCACCAAGCTTGTACATGTTAGAAATGGTTGACATCTAAA TGCAACTTCTCAAGATACATGCTTACATGGTCGTCGCTCTCCAAATTTGGTCTGGATGTGTTTAACCACCAGGCTTGTAC ATATTAGAATTGAATCTAAGAACATCCTTCTATTTATTGTATATCAACCATTCCTGCAATCTATATGAATCTATAAAGCA TTATATTTTTCCTTTACATTTCTTCTTTTTCATCAATTGTTTGGCTAATATGGTCTTTTCACTATTCTTTGGTACCTGAT AGGTTCTAAATATTGTACCTTGTTATATTTGTGTCATGAGCCAATGACCACATTTGTAATGTTCTTGATTACATTTTTTA TTTTTGTGGACCGTTCTTTGCAGTGGTTGTATGGACAATTTGGAAAGGTATGTGTGATGCTGACTTTGTAGGGGCACGGT TCAGCCTGTTGCTTTGATTCGCTGATCGCATGAGGTCTTGCATCAGGTGTGTGAAGCGCCATTGTTGTTACTTCAGTTGT TACTCAGCATTGGTGGCTTGGACCTTGGAAGCGTCCTCCGGATGGGTGGGTGGCTCTGAATGTGGATGGCAATTCCATGG GGAACCCGGTAGAGTTGGCTTTGGCGGTCTTGTGAGGAATGAGGCTAGCGATTGGTTGCTTGGTTTCCATTTTAGTATTG GCTTTTACTGTACAATGATGTTGGTTTCAGTAAAGTGCTTGGTTTCAATCATGTTAGTGCTAATACTAAAATTTTGAATT TGATTAAATTTTGAAGCTATTTCGAGATTTAAGAAATTG
CDS sequence (LotjaGi6g1v0135600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAATCATTGAGCTTGATCTCTGGAGGCCTCGGATTTCGTCCAATTCCGATAACCAAAGTCAGTGTATCAGGAAG GTTTACACCCAGATCTTCAGCAGTGCTTCGCATTCGGGCTGTGCAGGAGAATGGTGGACCGCGTAGACTAGTGGACATAG TCAGGCTCATTCCTGAGCTCTCAAAGAACTACTTTAAAAGTCCTTCTCGCAGGGCCCTATTTGGCGGAATCTCATTGCTT GGTGGATTTTATGTTGCACAAACAATCTCTCTGTCTTTTGGAGCTTTAGGAGTCAATGATGTTATTGCAGCAGTTTTATG TGTTCTTCTTACAGAGTATGTTACAAAGTTTTATTACAGCCGGCCAAAAGTTACTTTCCCAATTGCTCTTCTCAACAACT TCAAAATGGGTTTCACCTATGGACTCTTCATTGATGCATTTAAGCTTGCCAGTTGA
Protein sequence (LotjaGi6g1v0135600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQSLSLISGGLGFRPIPITKVSVSGRFTPRSSAVLRIRAVQENGGPRRLVDIVRLIPELSKNYFKSPSRRALFGGISLL GGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 71 | 71 | - | – | |
| PANTHER | 14 | 151 | 138 | 2.2E-75 | ||
| PANTHER | 14 | 151 | 138 | 2.2E-75 | – | |
| TMHMM | 72 | 91 | 20 | - | – | |
| Phobius | 72 | 95 | 24 | - | – | |
| Phobius | 96 | 100 | 5 | - | – | |
| Pfam | 97 | 151 | 55 | 1.6E-18 | ||
| Phobius | 101 | 119 | 19 | - | – | |
| TMHMM | 101 | 120 | 20 | - | – | |
| Phobius | 120 | 151 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0135600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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