Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0137500 |
| Transcript ID | LotjaGi6g1v0137500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid permease; TAIR: AT5G23810.1 amino acid permease 7; Swiss-Prot: sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7; TrEMBL-Plants: tr|I1N062|I1N062_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0137500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40068474..40070564) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGTGAAAAACTCTCTCCAAATAGCTAGAACTGCTTCTGATGCTTATGATGATGATGGGAGAGCCAAAAGGACTGG TAAAAATCAAAGTCTCTAAGTAACAAACCAATTTCATTTACTTGAGCTTGAATCCTGAATTTTAGTTAATTTTTGCAGGA ACTGTGGGGAGTGCTGTGGCTCATATCATTACTGCAGTTATTGGTTCTGGTGTTTTGTCTCTGGCATGGAGTACTTCTCA ACTAGGATGGATTGGAGGGCCAGTTGCCTTGCTTTGCTTTGCAATTATCACCTATGTTTCTTCATTCCTCATGTCTGATT GTTACAGACACCCTGATCCTGTCACTGGGAAGAGAAACTACTCATACATGGCTGCTGTTAGAATCAATCTTGGTACTAAA ATCTTCTCCATTTTCTTTTACAATAACTGCAGCCAAACACTGCTATGCTTTTCATGCACTAAAGAGCACTTATCGGAGGT TATCTACTCGAAAAAGCACCGGATAAGCCCCGGTAGTGCTCTTTGGTCCATATCCAAAAAGGCTCAAAGTCTAACTACAT TTTGTGCTAGTTCAGGTGAGAGAAGGACATATATGGCTGGTTTCCTTCAATTCTTGACCTTGTATGGGACTTGTATTGCT TATGTACTCACAACAGCAAATAGTCTAAGGTGCTACTCCTGTTAAACCCCTCATGAGATTGGAAGATTACCCTAATACTA TATACTATTTGTATGAAAATGTGATATTATAGAGACTTTTTATGAATGAATGACACATTTTTGTCTTACTAATACAGAGC GATTATGAAATCAAATTGCTATCACAAGGAAGGGCATCAAGCTCCTTGTGGTTATGGGGGTAGTTTGTATATGGTGATGT TTGGAATTGTTCAGATTCTAATGTCATTCATACCAGATCTTCACAACATGGCATGGGTTTCAGTTGTTGCTGCAATTATG TCCTTCACATACTCATTCATTGGACTAGGACTTGGAATATCCACAGTCATAAGTAATTTTTGTTTTGACTCATTTTCTGT CAATTTAAGATTCAACTTATTTGACAATTTTAAGCTTTCTGACAATTGATAACTTTTGTTGCACTTGCAGAAAATGGAAG AATTATGGGCAGCTTAACAGGAGTACCAGCTGCTAATATTGCTGACAAGTTATGGCTAGTCTTCCAAGCACTTGGTGACA TAGCATTTGCCTATCCTTACTCAATTATCCTTCTTGAGATACAGGTACTTTAAATTTCATATTCAAATTGGGTGCATAGA GGGTAGGGTGATTTAAGTTAGAAAGGAAGACAAAAAAATATTTTGATAGCTGAAACAAAGTATGAAATTTTGTTGAACAA AGGACACACTAGAGTCTCCTCCACCAGAAAATCAAACAATGAAAAAGGCCTCCATGATGGCAATCTTCATCACAACATTC TTCTATCTCTGCTGTGGATGCTTTGGATATGCTGCTTTTGGAAATGCTACACCAGGGAACCTCTTGACAGGTTTTGGGTT TTATGAGCCTTTCTGGCTCATTGACCTTGCTAATGCTTGCATTATTCTTCATTTGGTGGGAGGATATCAGGTACTACTAG TGTTACTAATCAAAGTTGACTAAGGAGAACTTTTTAATGTTAACTGACTATTAATACTTTTGTGTCATTTTGCATGGTCT TCTCTTCAGATTTTCTGCCAGCCAATATACAGTTCTGTTGATAGATGGTCTTCAAGAAGATTCCCAGACAGTGGCTTTGT GAATAACTCCTACAAAGTAAAACTGCCTCTGTTGCCTGCTTTTCAGCTGAATCTTTTCAGGTTCTGTTTTAGAACAGCCT ATGTGATTTCAACCACTGGACTTGCAATCTTGTTTCCTTACTTCAACCAAGTTCTTGGAGTGTTAGGAGCTGTAAACTTC TGGCCACTGGCTATATATTTCCCAGTAGAGATGTACTTTGTGCAGCAGAATGTTGGTGCTTGGACTAAAAAATGGATCAT TCTCAGGACTTTTAGCTTTGCTTGCTTTCTTGTCACAGTGGTAGGCCTCATCGGGTCAATTGAAGGAATCATAAAAGAAA AACTTGGATGA
CDS sequence (LotjaGi6g1v0137500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGAAAAACTCTCTCCAAATAGCTAGAACTGCTTCTGATGCTTATGATGATGATGGGAGAGCCAAAAGGACTGG AACTGTGGGGAGTGCTGTGGCTCATATCATTACTGCAGTTATTGGTTCTGGTGTTTTGTCTCTGGCATGGAGTACTTCTC AACTAGGATGGATTGGAGGGCCAGTTGCCTTGCTTTGCTTTGCAATTATCACCTATGTTTCTTCATTCCTCATGTCTGAT TGTTACAGACACCCTGATCCTGTCACTGGGAAGAGAAACTACTCATACATGGCTGCTGTTAGAATCAATCTTGGTGAGAG AAGGACATATATGGCTGGTTTCCTTCAATTCTTGACCTTGTATGGGACTTGTATTGCTTATGTACTCACAACAGCAAATA GTCTAAGAGCGATTATGAAATCAAATTGCTATCACAAGGAAGGGCATCAAGCTCCTTGTGGTTATGGGGGTAGTTTGTAT ATGGTGATGTTTGGAATTGTTCAGATTCTAATGTCATTCATACCAGATCTTCACAACATGGCATGGGTTTCAGTTGTTGC TGCAATTATGTCCTTCACATACTCATTCATTGGACTAGGACTTGGAATATCCACAGTCATAAAAAATGGAAGAATTATGG GCAGCTTAACAGGAGTACCAGCTGCTAATATTGCTGACAAGTTATGGCTAGTCTTCCAAGCACTTGGTGACATAGCATTT GCCTATCCTTACTCAATTATCCTTCTTGAGATACAGGACACACTAGAGTCTCCTCCACCAGAAAATCAAACAATGAAAAA GGCCTCCATGATGGCAATCTTCATCACAACATTCTTCTATCTCTGCTGTGGATGCTTTGGATATGCTGCTTTTGGAAATG CTACACCAGGGAACCTCTTGACAGGTTTTGGGTTTTATGAGCCTTTCTGGCTCATTGACCTTGCTAATGCTTGCATTATT CTTCATTTGGTGGGAGGATATCAGATTTTCTGCCAGCCAATATACAGTTCTGTTGATAGATGGTCTTCAAGAAGATTCCC AGACAGTGGCTTTGTGAATAACTCCTACAAAGTAAAACTGCCTCTGTTGCCTGCTTTTCAGCTGAATCTTTTCAGGTTCT GTTTTAGAACAGCCTATGTGATTTCAACCACTGGACTTGCAATCTTGTTTCCTTACTTCAACCAAGTTCTTGGAGTGTTA GGAGCTGTAAACTTCTGGCCACTGGCTATATATTTCCCAGTAGAGATGTACTTTGTGCAGCAGAATGTTGGTGCTTGGAC TAAAAAATGGATCATTCTCAGGACTTTTAGCTTTGCTTGCTTTCTTGTCACAGTGGTAGGCCTCATCGGGTCAATTGAAG GAATCATAAAAGAAAAACTTGGATGA
Protein sequence (LotjaGi6g1v0137500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVKNSLQIARTASDAYDDDGRAKRTGTVGSAVAHIITAVIGSGVLSLAWSTSQLGWIGGPVALLCFAIITYVSSFLMSD CYRHPDPVTGKRNYSYMAAVRINLGERRTYMAGFLQFLTLYGTCIAYVLTTANSLRAIMKSNCYHKEGHQAPCGYGGSLY MVMFGIVQILMSFIPDLHNMAWVSVVAAIMSFTYSFIGLGLGISTVIKNGRIMGSLTGVPAANIADKLWLVFQALGDIAF AYPYSIILLEIQDTLESPPPENQTMKKASMMAIFITTFFYLCCGCFGYAAFGNATPGNLLTGFGFYEPFWLIDLANACII LHLVGGYQIFCQPIYSSVDRWSSRRFPDSGFVNNSYKVKLPLLPAFQLNLFRFCFRTAYVISTTGLAILFPYFNQVLGVL GAVNFWPLAIYFPVEMYFVQQNVGAWTKKWIILRTFSFACFLVTVVGLIGSIEGIIKEKLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 23 | 460 | 438 | 2.9E-207 | – | |
| PANTHER | 23 | 460 | 438 | 2.9E-207 | – | |
| Pfam | 25 | 456 | 432 | 1.2E-100 | ||
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 32 | 50 | 19 | - | – | |
| Phobius | 51 | 56 | 6 | - | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 57 | 78 | 22 | - | – | |
| Phobius | 79 | 109 | 31 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 110 | 132 | 23 | - | – | |
| Phobius | 133 | 152 | 20 | - | – | |
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 153 | 174 | 22 | - | – | |
| Phobius | 175 | 179 | 5 | - | – | |
| Phobius | 180 | 203 | 24 | - | – | |
| TMHMM | 185 | 207 | 23 | - | – | |
| Phobius | 204 | 269 | 66 | - | – | |
| Phobius | 270 | 289 | 20 | - | – | |
| TMHMM | 272 | 294 | 23 | - | – | |
| Phobius | 290 | 308 | 19 | - | – | |
| Phobius | 309 | 330 | 22 | - | – | |
| TMHMM | 309 | 331 | 23 | - | – | |
| Phobius | 331 | 372 | 42 | - | – | |
| Phobius | 373 | 393 | 21 | - | – | |
| TMHMM | 388 | 410 | 23 | - | – | |
| Phobius | 394 | 398 | 5 | - | – | |
| Phobius | 399 | 419 | 21 | - | – | |
| Phobius | 420 | 430 | 11 | - | – | |
| TMHMM | 430 | 452 | 23 | - | – | |
| Phobius | 431 | 452 | 22 | - | – | |
| Phobius | 453 | 461 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0137500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…