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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0137900 |
| Transcript ID | LotjaGi6g1v0137900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DNAj, putative; TAIR: AT3G13310.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic; TrEMBL-Plants: tr|I1N064|I1N064_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0137900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40218385..40219527) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAACTGGCGTGGACCCTATTATACTCCCATCCAAAACCGAAGCCTTCTAGAAGCGCTCTCAAAACGCACAGTTCCAT TTGTTCCACCCTCTTTTTCTTCAACGGGCCCCACCCGTCATGCATCCATCCCTCGTGGCACGTTAAATGACCCTTATACC CCTCCTTCTCTCCTCACTTTCTCTCTCTACCATTGACCTCTATATAAACCCCTCTCACACCTTTCTCCCCTCACCGTGAA AAACGCACTTCACATTCTCACCGGAAAATCTCATCACCACCCTCCACCACCACTCTCCGATTCAACTTCCCGATGACGAC GGCAACGCTCACTCTCGGCGCCTTCTCCGCCACTCCGTCACACCGCTTATTCAACTCCCGTCGGGCTTCGATCCGTTCCG TCGCAGCGGAGGCTGTCCAGTCGCGGCGGCCGGCGGCGAGCTTCTACGAGGTCCTCCGCGTGGATCAAGGCGCGTCGCCG ACGGAGATCAAGTCGGCTTACCGGAGCCTCGCGAAGGTCTACCACCCCGACGCGGCGGTGCGCCGCTCGCCGGAGGTCGA CGGCGGGGACTTCATTCAGATCCGCAACGCGTATGAGACGCTCTCCGATCCGTCGGCCAGGGCGACGTATGACATGTCGC TGTCGGCGGCGAACGGCGGGAGACGGCGGCGGTTTTCATCTCCGCTGACGATGAACCGACGTGCCGGGTCGTACCCGACC CGAAGATGGGAAACGGATCAATGCTGGTAGAGACTAGAGAAAGCGTTTAAGTTTGCTTCGCCTATTAACAAAGGGAATTG TAGATTGGTTATCAAGAAAGTGAAAGTAAAAAGAGAGTGAAGAGAAGGGTAGGAAATTACTAACATTAGCCCATGTAGAA CAGATGAGTAAAAGATAAGAAAAATATTATGTCTTCTTTTTGTGACAATTTAAATGATTTTCTTTTGTTGGCTAATTTTA CATTTCCTTTATGTTGATATTGGACATAAGCCAACAAAAATGGAATAAAGAAATTTGTAGTTATGGAACATAATTTGGAA TGTCTCATTTGCAAGTAATGCACTTTAAGGTTATAGGTACATGACTTGCTTAATCAGCGTGGTCTATGTTGAAGTCAACG AATCAGCGGATTTTTTAATTCAC
CDS sequence (LotjaGi6g1v0137900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACGGCAACGCTCACTCTCGGCGCCTTCTCCGCCACTCCGTCACACCGCTTATTCAACTCCCGTCGGGCTTCGAT CCGTTCCGTCGCAGCGGAGGCTGTCCAGTCGCGGCGGCCGGCGGCGAGCTTCTACGAGGTCCTCCGCGTGGATCAAGGCG CGTCGCCGACGGAGATCAAGTCGGCTTACCGGAGCCTCGCGAAGGTCTACCACCCCGACGCGGCGGTGCGCCGCTCGCCG GAGGTCGACGGCGGGGACTTCATTCAGATCCGCAACGCGTATGAGACGCTCTCCGATCCGTCGGCCAGGGCGACGTATGA CATGTCGCTGTCGGCGGCGAACGGCGGGAGACGGCGGCGGTTTTCATCTCCGCTGACGATGAACCGACGTGCCGGGTCGT ACCCGACCCGAAGATGGGAAACGGATCAATGCTGGTAG
Protein sequence (LotjaGi6g1v0137900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTATLTLGAFSATPSHRLFNSRRASIRSVAAEAVQSRRPAASFYEVLRVDQGASPTEIKSAYRSLAKVYHPDAAVRRSP EVDGGDFIQIRNAYETLSDPSARATYDMSLSAANGGRRRRFSSPLTMNRRAGSYPTRRWETDQCW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 14 | 145 | 132 | 3.0E-50 | – | |
| Phobius | 15 | 32 | 18 | - | – | |
| Gene3D | 29 | 124 | 96 | 5.2E-21 | ||
| Phobius | 33 | 145 | 113 | - | – | |
| SUPERFAMILY | 41 | 115 | 75 | 2.22E-20 | ||
| SMART | 42 | 102 | 61 | 8.0E-15 | ||
| ProSiteProfiles | 43 | 110 | 68 | 16.432 | ||
| Pfam | 44 | 107 | 64 | 3.2E-19 | ||
| CDD | 44 | 99 | 56 | 7.16794E-17 | ||
| PRINTS | 45 | 63 | 19 | 5.0E-11 | ||
| PRINTS | 63 | 78 | 16 | 5.0E-11 | ||
| PRINTS | 82 | 102 | 21 | 5.0E-11 | ||
| ProSitePatterns | 87 | 106 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0137900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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