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LotjaGi6g1v0138200.1

Overview

Field Value
Gene ID LotjaGi6g1v0138200
Transcript ID LotjaGi6g1v0138200.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein pno1; TAIR: AT3G13230.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9VR89|PNO1_DROME RNA-binding protein pno1; TrEMBL-Plants: tr|I3SQ56|I3SQ56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0138200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:40254325..40256055) extracted from Lotus japonicus Gifu genome v1.2.

CAAAATTTCAGAAGACAAGTGATGTCCTTATAACATAAACCCTAGACAACTCAACCCTCCCTCTTGCGCTTCTTTCTTCC TGATAGAACCGCCATTGCTGCTGCGCCTCCATCTTCTCCTCGCCACCCCAGGTACGTTCTCCCTCTTCTTCTCGCTTTCT CAGTGTTAAAGTTTACAACTTTGCTCTTTCTCACTCTCCCTCTCTTCACTACACTGCAATTAAGCTTTGAACTGCAATTA GGGTTTTAGAACTAGATTAGAATGATTATCGGATTGATTAGAATGATTTTGATGCTGTTTAATAGAATTTTTGTTTCTTT ACACTTTGAAAATTGTAATGATTAATTAACTGTTCTGCCCTTGTTGTGTTTGAAGCTGAAAAGTGAAAAATTACTCAATC TGATTGTGTTAAACAAATGGGGTTTTTTTTGTTTGTAGTTTAAGATTGGGTTAAGGCTGAATACTATAGAAAATTTAATT TTTTTAATAATTATAAATGAGGGGATGTGTGTTGTTTGATGTATTAGCTTATGGTTTAAATTGTTGAACTTTGCAATATC TTAAACTTTCAGAGTTAGTACTGTTATTGACTGTATTCTGTGATAGTAATCGCCAACATGCCGAATAGAAATTTGTTAAA TTTGCCCTTAAATTTTGTCACTGAACTGGTCTGCTGATGTCTAGAACTGCTGGAGAAGATTTTGTTTATTAGCATTTTAA TTTTATGCTTGCTTTTGTATAACTATAATTAACTTTTATTTTGGGTGGTCTTGGAACAGTTGCGCAATGCAGTCGAACGA GGCACCTTCTACCATGGAAGTTGAAGCTTCCCCATCTGAACCCAAAGTTCTGCCACCGAAGCCGTTGTTTGAGCCTTTGA AGCCTCATGAGATGTCGGATGGGCAGGTTCAGTTCCGCAAGGTGTCTGTTCCGCCTCATCGTTATACGCCTCTCAAGAAA GCCTGGATGGATCTCTACACTCCGATATATGAACAGATGAAGATCGATGTCCGTATGAATCTGAAGGCTAGAAAAGTTGA GTTGAAAACAAGGCGTGATACACCTGATATTAGTAACCTGCAAAAATGTGCTGATTTCGTCCATGCTTTCATGTTGGGAT TTGATGTCATCGATGCCATTGCACTTTTGCGTTTGGATGAGCTCTATATTGAGTCTTTTGAGATCAAGGATGTTAAAACA CTTCGTGGTGATCACTTGTCCCGTGCTATTGGAAGACTATCCGGCAAAGGTGGTAAAACAAAGTTTGCAATTGAGAATGC ATCCAAGACAAGAATCGTGATTGCTGACTCCAAAATTCATATACTGGGATCTTTTGCCAACATCAAGATTGCCAGGGATT CTCTTTGTAGCCTAATTATGGGATCACCTGCAGGAAAGGTATACTCCAAGCTAAGAGCAGTTACTTCTAGACTGGCAGAA AGGTTTTGATCTTCTATTAATCATGGCATTTTAGGAACTTTCTTTCTGGTTCCATAGAAATTTCTATAATCTCTCTGTTA TCAAGTGTGATGATGAGTTATTGTGGGGAAGTTGTTTCATTTGATTTAATTAAGCTATTTGTTGTACTCAAATCAAAAGT TATGGATGTAACAGCGTTGCTGTGAAGTTTTGCCTGTGACATTGATAATTATTATAGAGAGTTTATATACATGTTTAGTG TCTGATTGATACAGATAATGGTTAGTTTCTTTCTCGCAACGTACCCAGCAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0138200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGTCGAACGAGGCACCTTCTACCATGGAAGTTGAAGCTTCCCCATCTGAACCCAAAGTTCTGCCACCGAAGCCGTT GTTTGAGCCTTTGAAGCCTCATGAGATGTCGGATGGGCAGGTTCAGTTCCGCAAGGTGTCTGTTCCGCCTCATCGTTATA CGCCTCTCAAGAAAGCCTGGATGGATCTCTACACTCCGATATATGAACAGATGAAGATCGATGTCCGTATGAATCTGAAG GCTAGAAAAGTTGAGTTGAAAACAAGGCGTGATACACCTGATATTAGTAACCTGCAAAAATGTGCTGATTTCGTCCATGC TTTCATGTTGGGATTTGATGTCATCGATGCCATTGCACTTTTGCGTTTGGATGAGCTCTATATTGAGTCTTTTGAGATCA AGGATGTTAAAACACTTCGTGGTGATCACTTGTCCCGTGCTATTGGAAGACTATCCGGCAAAGGTGGTAAAACAAAGTTT GCAATTGAGAATGCATCCAAGACAAGAATCGTGATTGCTGACTCCAAAATTCATATACTGGGATCTTTTGCCAACATCAA GATTGCCAGGGATTCTCTTTGTAGCCTAATTATGGGATCACCTGCAGGAAAGGTATACTCCAAGCTAAGAGCAGTTACTT CTAGACTGGCAGAAAGGTTTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0138200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQSNEAPSTMEVEASPSEPKVLPPKPLFEPLKPHEMSDGQVQFRKVSVPPHRYTPLKKAWMDLYTPIYEQMKIDVRMNLK ARKVELKTRRDTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKF AIENASKTRIVIADSKIHILGSFANIKIARDSLCSLIMGSPAGKVYSKLRAVTSRLAERF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 29 29 - –
PANTHER
PTHR12826
18 220 203 1.6E-118 –
PANTHER
PTHR12826:SF13
18 220 203 1.6E-118
IPR039912
CDD
cd17308
70 155 86 4.97524E-4 –
Gene3D
G3DSA:3.30.1370.10
124 220 97 1.0E-24
IPR036612
SMART
SM00322
125 198 74 4.0E-5
IPR004087
SUPERFAMILY
SSF54791
125 219 95 7.75E-20
IPR036612
CDD
cd00105
145 191 47 4.3499E-4 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0138200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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