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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0139100 |
| Transcript ID | LotjaGi6g1v0139100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G18990.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q3E9D3|PME55_ARATH Probable pectinesterase 55; TrEMBL-Plants: tr|A0A072TNS0|A0A072TNS0_MEDTR Pectinesterase; Found in the gene: LotjaGi6g1v0139100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40434837..40436613) extracted from Lotus japonicus Gifu genome v1.2.
GTGTTACCTTACTAAAAAATATGCAGTCTCGCCAAATATTATCTATTATTTTTACATTGCAATTCCTTGCATTTGATGCT TATGAATCAATGATCTGTGGCAATCCACCCAAGGCCATTACCGTGAACCAATCAGGCAAAGGAGATTTCAGAACAATTCA AAATGCCATTGATTTTGTTCCTGCAGGAAATTCTCAATGGATTCACATCAAAATTTCTTCTGGTGTTTACAGGTAATATA TTTGCTTTCAGTATATCAGAAATAATCACAATAACAAAATTTACTATTAAACTTTGATATATTTTTCTAGAAAATTAATC TCTTTGCAAAATAATTTATATAGGTGAGCTAAATTGAATTTATAAATAAAAAATGTTAATACTTATATTGAAAAAAAAAA TGTGACTAACATTTCCAGTTTTTGTCAACACAGACTAATGTGAAGTGTTTTCTATCTAGCATATATTTTTCGCGTATTAT TTTTCTTAGAGTTAAGAGTCTAATAAAATAAGCATGATGTGCACTTGGTGTAATCCAGAGAGCAAATTGAAATTCCCATG AACAAATCATGTATTTATCTTGAAGGAGGTGGTAGCGGCTCGACAAGTATCGAATGGAGTACACATGAAGGTGCTACTTT CTATTCAAATGCAAATAATACAGTAGCAAAGGGCATTACTTTCAAGGTAATTGAACTAGTCATCTAGATCTATGTTAGAA AGATATTTGTTTCATTTGTTTTATAATTATAAAATTAAATAATAACTTTTTATTATATAATTAGAATATATTAAACCGCC CTGTAATATTAGAGGAGGAGAAAAACAAGATTACACAAGCTGTGGCAGCTCGGGTCCATGCAGACAAATGTGCTTTCTTT AATTGTGCTTTTCTAGGGGTGCAAGATACCTTATATGATGAATATGGTCGCCATTACTACCATAATTGCTACATTCAAGG TGGAGTTGATTTCATATTCGGGAATGGTCAATCAATTTTTGAGGTAATTAAAATAAATAAAAACTCATTCATATTCCTCT ATTGATATTCTTTAGTCCTACAAGTAATTCACTAGTAGCATTTCACAATTGGTCATGATCATATATTATAGGCAAGTACA ATATTTTTTTCAATGGGGAAGTTTGGTCCCAAAATGGATGGAGTTATCACAGCACATGAAAGGGATTCACCAAATGATCC AAGTGGGTTTGTGTTTAAAAATTGTATCATAAACGGGACAGGAGGAAAAGCTGAACTTGGAAGAGCTATGGCTGCTTATT CTAGGGTCATCATAGCCAATTCATTCTTAACAAATGTGGTTCGACCTGGGGGTTGGAGTTCTCGGAAATATGCAGGGCAC GAGTAAGATATTTAATTATATATGTATTTCAGATTATTCTTTATATATATATATATATATGTATATAATTTTTCAAAAAT ATATATTTATATATAAACTTCAATAATACAGAGAAACCATCACATTTGTGGAGAATAGAAACAGAGGACCAGGAGTGAAA GTTCCGCGCGTGAAATGGATGAAGCACTTGAGTAAGTCTGCGGTCAATAAATTCTTGAGTATCTCTTATATTGATGAAGA AGGGTGGGTTAACAAATTGCCAACAAAAATCTTCACCTGAAGTTGAATCAATGTGACTCATGTATTATTTTGTATTTGTT CAATATACATGGAAAAGCGACAAAAATAAATATTTCTTCGTTAATTATTGTTTATTACAACTTTAATTCAGACAATATGA GAAATATTATACTCGCT
CDS sequence (LotjaGi6g1v0139100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTCTCGCCAAATATTATCTATTATTTTTACATTGCAATTCCTTGCATTTGATGCTTATGAATCAATGATCTGTGG CAATCCACCCAAGGCCATTACCGTGAACCAATCAGGCAAAGGAGATTTCAGAACAATTCAAAATGCCATTGATTTTGTTC CTGCAGGAAATTCTCAATGGATTCACATCAAAATTTCTTCTGGTGTTTACAGAGAGCAAATTGAAATTCCCATGAACAAA TCATGTATTTATCTTGAAGGAGGTGGTAGCGGCTCGACAAGTATCGAATGGAGTACACATGAAGGTGCTACTTTCTATTC AAATGCAAATAATACAGTAGCAAAGGGCATTACTTTCAAGAATATATTAAACCGCCCTGTAATATTAGAGGAGGAGAAAA ACAAGATTACACAAGCTGTGGCAGCTCGGGTCCATGCAGACAAATGTGCTTTCTTTAATTGTGCTTTTCTAGGGGTGCAA GATACCTTATATGATGAATATGGTCGCCATTACTACCATAATTGCTACATTCAAGGTGGAGTTGATTTCATATTCGGGAA TGGTCAATCAATTTTTGAGGCAAGTACAATATTTTTTTCAATGGGGAAGTTTGGTCCCAAAATGGATGGAGTTATCACAG CACATGAAAGGGATTCACCAAATGATCCAAGTGGGTTTGTGTTTAAAAATTGTATCATAAACGGGACAGGAGGAAAAGCT GAACTTGGAAGAGCTATGGCTGCTTATTCTAGGGTCATCATAGCCAATTCATTCTTAACAAATGTGGTTCGACCTGGGGG TTGGAGTTCTCGGAAATATGCAGGGCACGAAGAAACCATCACATTTGTGGAGAATAGAAACAGAGGACCAGGAGTGAAAG TTCCGCGCGTGAAATGGATGAAGCACTTGAGTAAGTCTGCGGTCAATAAATTCTTGAGTATCTCTTATATTGATGAAGAA GGGTGGGTTAACAAATTGCCAACAAAAATCTTCACCTGA
Protein sequence (LotjaGi6g1v0139100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSRQILSIIFTLQFLAFDAYESMICGNPPKAITVNQSGKGDFRTIQNAIDFVPAGNSQWIHIKISSGVYREQIEIPMNK SCIYLEGGGSGSTSIEWSTHEGATFYSNANNTVAKGITFKNILNRPVILEEEKNKITQAVAARVHADKCAFFNCAFLGVQ DTLYDEYGRHYYHNCYIQGGVDFIFGNGQSIFEASTIFFSMGKFGPKMDGVITAHERDSPNDPSGFVFKNCIINGTGGKA ELGRAMAAYSRVIIANSFLTNVVRPGGWSSRKYAGHEETITFVENRNRGPGVKVPRVKWMKHLSKSAVNKFLSISYIDEE GWVNKLPTKIFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 20 | 4 | - | – | |
| Phobius | 21 | 332 | 312 | - | – | |
| Gene3D | 28 | 330 | 303 | 5.8E-89 | ||
| PANTHER | 29 | 330 | 302 | 1.3E-128 | – | |
| SUPERFAMILY | 29 | 328 | 300 | 1.33E-78 | ||
| PANTHER | 29 | 330 | 302 | 1.3E-128 | – | |
| Pfam | 33 | 318 | 286 | 5.9E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi6g1v0139100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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