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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0139500 |
| Transcript ID | LotjaGi6g1v0139500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle transport protein; TAIR: AT4G26550.1 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|P38166|SFT2_YEAST Protein transport protein SFT2; TrEMBL-Plants: tr|G7IXT8|G7IXT8_MEDTR Vesicle transport protein; Found in the gene: LotjaGi6g1v0139500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40642182..40648151) extracted from Lotus japonicus Gifu genome v1.2.
AACAAATCACCTTTTTTTTTCGGTTTCAAATCGGGCCGAGCCTTCTTGGACAACACTAGATGAAATATTAGAAAATTACA CCAGTTTTCATTCATAGGCGCCCACCAGCACCTAACTACTGCTAACTCACTCACCGACTCTCTTTCTCTCTCACACACTC CGATCCCATTTCCCTAGTCACTCTCCAAAGAAAGAAATCAGGGTCGTTTGACAGCGGAGAAGATGCAGAATTGGTTCTCC GGCGGCACCACCGACGACGATCAGAAGGCGTCGTCGTCTTTGCTGGCCGATTGGAACTCCTACGCATCCTCCCAGGAGCC CGCCGATTCGGCCCTTTCCTTCGATCTCGAATCCGCAGTTCGGTCTGCAAACGACACCGTTTCCGGCACTTTCAGCGTGT AAGCCCACTCCACACTCCTTACCACCTTCACTTCAATCTCTACATTGCTTTTGTTTCAAGTATAGATGAATTGCTGTTGT TTCGTTTTCACAATTTGATGATCAACCCAATGGGTCAAAAGTGTTGTTTTTGAATTAAAAATGGTTATTTTCCCCTTCAA ATGGGTGAACATGCGTATAGAGACTAATGGGTATGTGCTGGTTGTTTCAAGTTTTTGTCTTTTTCCATTTGGATCATGCT TTGCTGATTGGTGAGATTGAGTGAGTGAATTGAAAATGAGGAGACACTGATAGATAGCATTTGGAATTTACTTGTCTTTT GGATAAGTAAGAGAGATTGACAAGATGGTGTCTAAAATTTGTTGTGCTAGGAGATGAAATAAGTCTGGTAACTTGGAGGT GATGCATTGGGAAATCACAAAGTTTTCTGAGAGAGACATTCATGATGCTGAAATGTTGAATTTACTCATATTAGCATGCA AAAGTTACACTAACATCCCTTTGTCCCGCCTTTTCTAAATATTTGCCGTGATGATATAAAATGATATAAACTTTAACATG TTAACTTCTGAGAACTGTAAGGTTAAAAGGTGAAAGGCGCTAGTTGTGCTTTCATCAAAATAAAAAAGAAAAGATGATTT TCATTAAAAAGCTATGGAGTTTAGAATAGAATCAGGATTAAAACGTTAAGAAGTCCAATTTGCATTGTTTTTTATGAGAA AAAAAAAATTACATGGTCCTAGCTTTCTAGTTTCATTCCCCCCTCCCCATGTATTCATTAGTTTGATCTGAAAAGTGCTA GTTATGGTGTGAGTGCATGTGTGTGTATCAAATGGATAGATGGGATAGACTTTGGATTGTATTAAATGATGGGTAAAAAT TTAACATTAATCCATTTAAGACCCTTTAAAACAATCCGATCTATCTATGAGCTTAATGGATACATATCCAAACCAGCCGG TAACATTTTTATGGACTGATATCCAACCCATCCATTCAAAATAATAGCAGTAGTTTGTTGGGATGAAGTTAATAAATTCA GTTAGGCAGTGCTTGTTAGAGAATCTGAGTCTTTCAGTAGTAAAGGAGTCACCCTCGTGAGGGAATTCTCTCCCTTGCAT CTCAACTCTCAGCATGATGAAAATAACAGATTCTTTTCTTCTTCACTCTCATTCTTTCTCCACATCAGTAATTGTCCACA CAGCTAGCACAAGTCCCTATAAGCTTCATCAACAGCAAAGAGAGAAAAGTGTTCAGAGCTGGACAGTAGTGGCTATATTT AGGCTTTGACAATAGTTTGTGAATGGGTGTTTATTGGATCGTAATTGACATGTTATTGGGCGGTCCATTAACTATATCTA ATAAGTGAATTGAATTTAGTAAACCCATCCAATATAATTAATACCATTTGAATTGAATTTGATTTATTTATTGCTTGTCT GAATTTCTAATGGATTCATGGATCATTTTGCCACTCATATGACTGTATCTTGCAAATGTTCATTCCGCAGCTTTTCTCTT ATATAATACCTTAATTTCTTATATATTTATAATGCATTATAATGTATCTATTTATAATGCATATGCTGGATTTGATTTGA TAAAGAGGAAGAGGGATTATGTGAATGAGTTAGGAAAAGATGAAGGTGACTATGGGAGCTTGGATGGTGCTGATTTAAAA GATTAGCACTTGCTAGGAATCCGTATGGATTACAGGATAGGACCTTAAAGTATGACAAGCAGTAAGTTCAGTCGGTGGTA TCTTGGATGATATTACTCTAACTTCAATGTTTTCTTCTTGGCGAGAACAATATGTTTCCTAATATCAAAGAAATTGGGAC ATATACATGTGCATTAACTTTTTCACCTCTGTCTTGTGTCAAATACTTCACTCTGAGATCATATATTGAAACTGTCACAA CAGTTAGAATCAGTTACATACAACTCTATCCGACTAACAGCTGACAGGCACAAACAGAAGCTAATAAAACAATTTCTGTA ACTGGACTAGTGACTAGCCTATAAATCTATCACCTGGACAGACCGGTCACTAGTTTCTGATGCAATTGTATGTGGGAAAA GTTGTCTATTCTGTCTGCCTTATCTTAATGTGACAGAGGGACATTGTTATTGTTCTTCAGTGTCTCTTCTTAATGGTATA AAGTTGCAGCAAAAACAACAGTAAATGGGTATTGCAATTTCCTCCAAAATTTTTCAAATGCATTTCCTGAAATTGCAAAA GAACATGCTGACAGGAAAGCATTTTATACTGAATAGTTTTGTCTTAACTTTCCTCTACTTAAGAAATCTATCTCTTATTG TTCAGGGTTTCTAAAGGTGTGAGAGATCTACCAGGCAACTTCCAGTCTGCCACTAGTAGTGTTCCTTCTGGCAAGGCACT CGCGTATTTTGGTTTGCTTTTAGGAAGTGGGGTCTTCTTTGTTTTCATAGCGTTTACATTGTTCCTGCCTGTCATGGTGG TTATGCCCCAAAAATTTGCTATATGCTTCACTCTTGGATGTGGATTTATTATTGGATCGTTCTTTGCTCTCAAGGGTCCA AAATATCAGCTTGCTCACATGTTGTCAAAGGAGGTAACTTGCTAGATTTTCATTCCTGTTTCTTGCATGGTGACAAAAAA TTTCACTGGTCACTATATATTGCTTCCGTGAGTTTCTTTGGGCTTTTGAAAAATATAGTTCCTTTGATTTGATTGCACGT GTTTGCTACTCTTTTCTAATTGTCTCTCTTTGTGATTATATTTCAGAGGCTTCCTTTCACATTGGTTTTTCTAGGCAGTA TGATTGGTACAATATATGTATCCATGGTGGTTCACAGCTATATTCTCTCTGTGGTATTCTCTGTGGTACAGGTATCCATC TCATGTATCCTATAATGCTTCTTTGTAGCTTCACCGTTCCCCATATGTTTGCATTTGCTGTTGATTTAATGTATGCTCAA CGTTTTTGTCTTTCAAATATGTTATAAGACTTTCAGCTGGTTGGAAGAGAAATGAAGTGATTTGATGTACAACAGAAAGA AAAGAATGATCTTATTTAATGCTTACAATATCTAGTGGACAGGATTAGGAAAGAAAACAATGGTTCACAGTGTGTTTAAG ACCCTGATTTCATCTCTCCTCACTACCCTGACAAGACTCCAAAAGACTCCTCTCCCCCTCAGCCAATGACTCCCCATATG GTTGCTGCCAATTTTCCATCAGCTTCTCTTTGATAGGCGCCACCCCAATATCTCCTCTTATGCGATTATTGTGTATCCTA TCCTTTCTAGAGTGGCCAAACATCCATCATAACATTCTCATTTAGACTTCTCCAACTCTTATAGCTGTTTGGTAGGTACT TTGCGGTACCGGTCACATATAACTCATGATGCTTTTCTCCACTTTAATCATCCAACTTGAGTTCTGCATGTAATCTTTGT CAATTTCCCCATTATTTTGTATAATAGATCCCATGTACTTAAACTGTCAAACCTGTGGTATGATGTCGTTTGCATTTTTA CCTTCAGATTACTTTCAACACTGACCTTACTAAAAATTATTTTTTTAATGGGACACCTGATGGGATGAGAAGTGTCTGTT TCATAGATTAAGGTAGAGGCTTGGAAGGTTAATAGGAAGCTAAGTTAGTCAGTTATATAGGGGAATCAGCTGTTTAATCG GATTCCTTCAGAGTTTTAAAAATAATTGTTTGTAAGGGGAAATCTTATAGGAGACTCCCTTTCATGCTAATCTCTTTCTC TTTATCAGTCTTATTCTCTTTTTCTGCAAGTTTTCATATTTGGGATCCTAACAGATGGGTGTATCGTGCACGTTTAACAT AGTTGCTGCAATTATGATTTAGGGATATGAAAATATGTATTCCTTACAAAAAAATTTCGATAAGTTATTAGTCTTGTTTC CTTCTAAAACTATCCATCTGGCACTACAATTGAAATTATGTCTGTACTTGCAGGTTCTCTCACTTGGGTACTATGCTATA TCATACTTTCCTGGTGGATCTGCTGGGATGAAATTTCTGACTTCTGCTCTTACCTCCTCAATAATGAGATGTTTTGGGAG GTGACCTGTTGAGGTCAGATCTTTGTCCATATTGTAGTTGACTTGTAAATTTTGTCTCCTGAGATCTATCAGCTGAAGCG TTAACCTGACCTACGAATTTTTCCGAGTTGGAGCATCATGTAGCACTTTGTTACAGTTCAATGCTTCGTTGCCAAATGCC ACATCTGAATGAAAAAATTGAATTGCCTCTTATAGTTAAGTTTCTAAATGCACATTAACGTGGTCTGTTTGATGTAGTTA GTGTTTATTATTTATTATTGAACAATTATTTTACTTTAGTTTTTAGGTGTTAGTATTTTTAGATTTACAAAACAACCCCT CCCTTGTTTTGGTTCAGAGCAATAAACACTGATGAAAGAGTGGGAGGATGAGGGTGGAGATTTTGCGGCAGCCCCGCCAT CCCTCTCCCTCCCTGGATCATGCCTGCAGTGGTGGTTTCCCACACCATTTTCCCTGTGACCACTTTCTTCAGCTTCCATT GGAGAACCAAAACCTTCTGCAATCTGCTTCCACCATAATCCCCTACACATTAATGGCAGCATATGGCATAGAAGACAACT ATGTCGCACCAATCACACAAGTTCAACAGCAAAACCTTCAGGCAGTGGTGTTTGGAAACAACACTAATGAACACTGTTTT GGATACAACACTAATGAACATGCCGTTGATCAACACTAGTCAAATACATTGTTTCACAATTTAGTCAATCAGATGTAACC TAAGACGCTGTGAATGACATTTCTATGTCATTATCGTTTTCTGTTTCAGTGTTCATCTTCAGTATAATAACTTCATAGAA CCACCATGAACGCATTGATTCTTCGAAAGAAAACCCAGATGTCATATGAGATCTATTCAAATGCAAATCTGTAACAAAAT AATCAAAATGGAGTTTGTACTGTGGTTTACTATTTGTAGTTTTGGTCTTGAAATAAGCTTGCCATTTTTGCATGTCTGTC GATTCCTTTACTTGGACTCTCGCTACAACTTCCTCGGCGTTGTCAAAGCTGTTCCTTCCTCGACTTCAACTCTTACAACT TCCGTGGGCAAAAAATCTGACCCCTACCTCTTCTATGAGCTTGTCAATGCTCTCATTCAAACCCTCGAAACCCTAACCCT GATTCACATGCATTGGAATTTTCCTCATTGGACTCACTTTGAAGTCCATTCACGGTTGTACCTCTTATGTTGTCCGCTCC CTTCTCTTCCTTCCCTTACCAAACTTTCCATAGCAAAACATGCGGCCATCAACCCTTCTCCCTACCAACAGCTTCTTCCT CCTCCTATAAGCCAAAGCATAGTTTCATGCCGCTGCTTCTTCGAGTTCCTTTAAAGCCCCTTTTGCTTTCTCAAAAACTT CTCACACCTACTTCAAAATTTCCTTTCAGGTGAGGAGGAGCACATGCACTGATTTTTCTCTCTTTTCACTCTCAATTTCG CTGGCTCACTCTCTCTTCCACTCGACATTGACAGAGCCACACCACACCAC
CDS sequence (LotjaGi6g1v0139500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAATTGGTTCTCCGGCGGCACCACCGACGACGATCAGAAGGCGTCGTCGTCTTTGCTGGCCGATTGGAACTCCTA CGCATCCTCCCAGGAGCCCGCCGATTCGGCCCTTTCCTTCGATCTCGAATCCGCAGTTCGGTCTGCAAACGACACCGTTT CCGGCACTTTCAGCGTGGTTTCTAAAGGTGTGAGAGATCTACCAGGCAACTTCCAGTCTGCCACTAGTAGTGTTCCTTCT GGCAAGGCACTCGCGTATTTTGGTTTGCTTTTAGGAAGTGGGGTCTTCTTTGTTTTCATAGCGTTTACATTGTTCCTGCC TGTCATGGTGGTTATGCCCCAAAAATTTGCTATATGCTTCACTCTTGGATGTGGATTTATTATTGGATCGTTCTTTGCTC TCAAGGGTCCAAAATATCAGCTTGCTCACATGTTGTCAAAGGAGAGGCTTCCTTTCACATTGGTTTTTCTAGGCAGTATG ATTGGTACAATATATGTATCCATGGTGGTTCACAGCTATATTCTCTCTGTGGTATTCTCTGTGGTACAGGTTCTCTCACT TGGGTACTATGCTATATCATACTTTCCTGGTGGATCTGCTGGGATGAAATTTCTGACTTCTGCTCTTACCTCCTCAATAA TGAGATGTTTTGGGAGGTGA
Protein sequence (LotjaGi6g1v0139500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNWFSGGTTDDDQKASSSLLADWNSYASSQEPADSALSFDLESAVRSANDTVSGTFSVVSKGVRDLPGNFQSATSSVPS GKALAYFGLLLGSGVFFVFIAFTLFLPVMVVMPQKFAICFTLGCGFIIGSFFALKGPKYQLAHMLSKERLPFTLVFLGSM IGTIYVSMVVHSYILSVVFSVVQVLSLGYYAISYFPGGSAGMKFLTSALTSSIMRCFGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 82 | 82 | - | – | |
| PANTHER | 3 | 219 | 217 | 1.6E-115 | ||
| PANTHER | 3 | 219 | 217 | 1.6E-115 | – | |
| Phobius | 83 | 109 | 27 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Pfam | 94 | 206 | 113 | 2.4E-28 | ||
| Phobius | 110 | 114 | 5 | - | – | |
| Phobius | 115 | 134 | 20 | - | – | |
| TMHMM | 116 | 134 | 19 | - | – | |
| Phobius | 135 | 149 | 15 | - | – | |
| Phobius | 150 | 167 | 18 | - | – | |
| TMHMM | 155 | 177 | 23 | - | – | |
| Phobius | 168 | 172 | 5 | - | – | |
| Phobius | 173 | 192 | 20 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 193 | 219 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0139500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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