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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0139600 |
| Transcript ID | LotjaGi6g1v0139600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT4G26555.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q944B0|FK161_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic; TrEMBL-Plants: tr|A0A0L9TF03|A0A0L9TF03_PHAAN Peptidylprolyl isomerase; Found in the gene: LotjaGi6g1v0139600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40651152..40654436) extracted from Lotus japonicus Gifu genome v1.2.
CTTCGCTGAGGTTAAAGGGAGGAAATTAGGAAAACAAAACAAAAGTGAAAGTTAAAGGGAAAGCTAATATGCGGGTGGGT CCAATCCAACCTCCTCAACGAGAAACACACCTCATTACTTTTGGATAGAGTCTCATACAGATAGATAATTGCATTGCTTT ACTCAATTTTTAGCTTCACTGGCCACAAGGTCTCAATTCTGAAGTTCCAAATTCAGTATGGGAGTTTTACCATTTCTCTT GGTTACACCTCCATGTGCTGCTCCTTTACCTGCATCTCCTGGGTATAGAATTGCTCTCTTTCTCAATTTTTTAATTTCTT TTAAATTGTGTCCATGATCTTGGTTTTGCTATTGAAAGAGCTAGTGTATAGTGTTCTACCATTTGATTTCAGCTATATTC TTCTTAGTATAATGGATAAATTTGTAGAGTTTCTTTCATTGGATTCTATGCTATTTCTGAACAATGAGTTGCTATATATA TCTCAATTCAAATAGATTAACTACCATGTTTCTTGAGAAGCATTTCTCTTGACAATGCGCTTCAAACCTTGCATGAATAT AGGTGTATGGAGGATACAAATCTCAACTATTCTGCATCTAAGAGCTTGCAATTGCATGATAGAGTTTCCACATTAACAGT TAAAGGGTTTTCAAGAAGGTTGATTCTTCAGTTTTTGGGCATTAATCACATAATAAGTTGTGCTTCTCCTGCTTTGGCTG CACCGGTTATGACAGATATGAAGGAACCTGAAGTCATCCGGTTTGTCTGTTCTATTCTTATTTTTGTGAATTGAAAATTT TCAGTGTATTGTGAAATTTGACTTACTATTTTTCATGTGAAGCCTCTAGGACATTGAAGCTAGCCAGTGGAGTGAGAATA CAAGGTCTGTAATTCTGTATATTCCATGCAATAGTTCTTTAGTAAAATGTTTGTGCATTGGATAATTTATGTAAGAATAC TTTGAGATTTCACCTCCATGAGTTTCATACCAATTTGATGCAAAGGCTTAGAGTCTTCTTTTCCCTATCTCTTGTGTGTG TGTGCGTTTCTTCTCTGCTTCTTTAAAGGAAGAGCGCAAATTTTCGGTTCTTTGATTAAAACATTGAACCCTTCGGCATT TTACTATCCCACTTGATTGAAAGGAATCAAGCTGTTAGTAAAAGTGTATGTCCATAAATAGGTAATTATGTGTTTTCGAA TTAGATATTGTTGAAGGGGAAGGACCAGAAGCGCGTGGTGGAGATTTGGTAGAATTCAATTATGTATGCCGGCGTGCAAA TGGATACTTTGTTTTCAGGTAATTGCTTCCTGTGAGGATTTTCTGTTTTCAATTCCTATAGAAAATCTTGATACTATACT GATTCTTATGACTCTAATCACAATGAGATTTTCAGATACTCTCCTTAGTCCTTTCATTTCTTGTTTTAAAATTTCCCCCT TTTTCTTGGTTTCATACTCTTATTCACAATAGTACAGTGGACCAATTCAGAGGAGAAAGCAGTCCTGTTACACTTGCTTT GGATGAGAACCAGGTCAATTTCTTTCTTTCAACTTGTAGGGTCCTGTAAACTCTGAAATGTGTTTATCATTCATTTCAGA TGAGTTCACTTATATATTGTCATATTTTGGACATGGGTATAGTTAAATAGAGTTCCTTTTATTTTTATAACATAGTTAAA TAGAGTTCCTTAATTCAATGAGAAAGTGACAAATGAAAAGAATAGACTCAAGTAAGTGAACAAAAGTTCATGATTTTCTT TGCTTTCTCTCTTTCTTTTTCTCTTTTTTCTTTTGAATTATATTGTTCAACAATTACTGCCATTTCATGACTCATGTGAA TATGCAACATTTAGCAAGTATCTGTCATTCTAGACACTGGCCTTATCATGCTAACTGTAGATATATGTCAGGGTGAGAAG GGGGCTCTTAGTGTGACTTAACATATATAAAGATCCTTCTTTGACCTTGCCATATTCTTCCAGAGTTGCAGTTGCATATC TAGAATACAAAATATGTTCATGCTTGTGAAAGAAAAGAAACAAAGAAATATGTAAAATATGGGCAAGGCAATTTAGTTGA TTGTGGAGTCATTTAATTGCCATCTCACTTGAATCATTGTTGCTTTCTTTCTTATATTCTTCAAAGTTGAGGATTCAGTT AACCACAAAATTTGACTCTATTATTCCTGATATTCTTTAGTTGTCCCCTTTTTGTTCTGCCTCATTATTTTCTGCACTTG TCCTTTTAGAACTTTTCCTATTAATACAAGACACAGAGAATTTCTTGATAATCTGACTTTCAACAGTTTATTTGTCTGTT ATAAATTCTTAATACTGAAAATGTCTTCTCATTATGAAAGTTGCATTTTCAAACAGATGATAATAGGATTAAAGGAGGTC TTGACTGGCATGAGAGTTGGTGGTATGTTCAAAGATATTCTCATTATTTTCTTGACTAACCAGCAGTATTGCCTCAGGAG TTTCTTATATATGTTAATTAGTCCAAGATTTTGGCATAAAATCATCTCTGATTCTAGATATCTGCTCTGCATCTTTTACA ATAAGAAGGGGCTAAGGAAATATTTAACAATACGCTCAATTATTTTTCTCCAAATATGTCAGTTCTGTAGTCATGGCTGT TTCTGTGGACACTGTACCTATTAATGTCATTGTGGTTACTCTTGCTGGTTTCGCTTGTAGGAAAGAGAAGAGCACTGATC CCACCTTCAGCAGGATATGTAAACGAGAACTTGCAACCAATACCTGAAGAGGTTAGATATGTACTGAGAGCCCTTTGGGC TACTTGCATCCAAACGAGTTTTGAATTACTATAGAAAATTTGTCAATAATGTTCTTCAAACATAGTAGATTGACAATGTT ATTATTGTTATCTGCAGTTTGGCCCTCGGCGCAGTCTATTTGCTCATGCACAAGAACCTTTGGTGTTCGAAGTTCAACTT TTGAAAATCTTGAGTCTTCCACAACCACCATCAATATTAAACTAAGTTTTTTATTTCTTGCATCAACCTGCATTTCATTG TTTTATGTTAAGCTGCAGAATCATGATCTCTTAAGACCTTAGTGGGAGAAGAATGAACATAATGTGTTTCACAGGATGGA AAAGTGGTAGGAAAAGGAAGAATTGCATATGTAAAGAATATTTTTTTATTTTTTGTTCCTATTTTGGGCCTTAATGTACT AGACAATGCAATTGCATAATAGGAAGAAATGCTCAGACAGTAATATGAATATATCACTCATGTTAAATATAGAGAGTTCA AATAA
CDS sequence (LotjaGi6g1v0139600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTTTTACCATTTCTCTTGGTTACACCTCCATGTGCTGCTCCTTTACCTGCATCTCCTGGGTGTATGGAGGATAC AAATCTCAACTATTCTGCATCTAAGAGCTTGCAATTGCATGATAGAGTTTCCACATTAACAGTTAAAGGGTTTTCAAGAA GGTTGATTCTTCAGTTTTTGGGCATTAATCACATAATAAGTTGTGCTTCTCCTGCTTTGGCTGCACCGGTTATGACAGAT ATGAAGGAACCTGAAGTCATCCGGACATTGAAGCTAGCCAGTGGAGTGAGAATACAAGATATTGTTGAAGGGGAAGGACC AGAAGCGCGTGGTGGAGATTTGGTAGAATTCAATTATGTATGCCGGCGTGCAAATGGATACTTTGTTTTCAGTACAGTGG ACCAATTCAGAGGAGAAAGCAGTCCTGTTACACTTGCTTTGGATGAGAACCAGATGATAATAGGATTAAAGGAGGTCTTG ACTGGCATGAGAGTTGGTGGAAAGAGAAGAGCACTGATCCCACCTTCAGCAGGATATGTAAACGAGAACTTGCAACCAAT ACCTGAAGAGTTTGGCCCTCGGCGCAGTCTATTTGCTCATGCACAAGAACCTTTGGTGTTCGAAGTTCAACTTTTGAAAA TCTTGAGTCTTCCACAACCACCATCAATATTAAACTAA
Protein sequence (LotjaGi6g1v0139600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVLPFLLVTPPCAAPLPASPGCMEDTNLNYSASKSLQLHDRVSTLTVKGFSRRLILQFLGINHIISCASPALAAPVMTD MKEPEVIRTLKLASGVRIQDIVEGEGPEARGGDLVEFNYVCRRANGYFVFSTVDQFRGESSPVTLALDENQMIIGLKEVL TGMRVGGKRRALIPPSAGYVNENLQPIPEEFGPRRSLFAHAQEPLVFEVQLLKILSLPQPPSILN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Phobius | 15 | 225 | 211 | - | – | |
| PANTHER | 49 | 214 | 166 | 2.8E-63 | – | |
| PANTHER | 49 | 214 | 166 | 2.8E-63 | – | |
| SUPERFAMILY | 67 | 214 | 148 | 8.25E-26 | – | |
| Gene3D | 77 | 215 | 139 | 2.7E-25 | – | |
| Pfam | 107 | 212 | 106 | 6.1E-18 | ||
| ProSiteProfiles | 112 | 215 | 104 | 13.614 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi6g1v0139600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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