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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0141400 |
| Transcript ID | LotjaGi6g1v0141400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase; TAIR: AT1G60620.1 RNA polymerase I subunit 43; Swiss-Prot: sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1; TrEMBL-Plants: tr|I1N089|I1N089_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0141400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40892128..40897249) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGGTTTAGGGTTTTAAATCCCCTCTACTCTACTCTACTACGCACTCGCCTCTCACAGTTCACAGTTGTCTTCAACCT CTCTCTCTCTCTCTCTCTCTCTCTCTCAGTAAGTCTCTCTTCGATTGTTGATCTTGATATTGATGTTTCCACTCACTTAT GTTGTACCCTAATTTTCAATCCATTCTTCTTCTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATTTCTTCCT TCCCTCCTCTTCTTCTCTATGGAGTTGGACACCAAAACGCCGCGTTCTGAAGAACCCTCGCCGACGACGTCGAAGAACTG ATGATTTATTGCTAAATCCCGCTTCTGACTACCTTGATTGATTGATGTTTTTATACAAGTAGTAACTGCAATTGAATCAT TATTCATCAAGTCATTGTTGAAGCTTTTGTTACTTTTTTCAATCTCTTGTAGAGTGAAAGGATAAGGCCATGAATTCGTA TAGTGTATCATTTTGGAGGAATGGATAAGTGACTAGTGTTTTTCACTTAATATTATTCATTTCATTTCATGGTCTCTTCT GACGCTAAATTACTAAAATACTACTGTTATATTATATAATTCTAGTAATTATTCTTTATATTTTAACTAGTTTATATTCA AGCTGTTGCACCATTTTTAGCTTTTGTCATGAATCATTTTCTTAAACCCTGAAACTTCACACTCTTTGAAACTTGTTTCG TCATTTTTCAGCAGCCAATCGCCGACTCGAAGCACAATAGCAACTATGAAAGAGGAGTTAATGTCAGAGGGTGAAGAACA AGAACAGAGCAATGGAGGAATACTTGACTACATAATGAACTTGGAGAGCGTTCCACAGAAGCTACCTCCACACCTCGAGC TTCTCAGGACTCGCGTCCTTTGCAACGTCGATGCTCCTCAGCATGTATCTATCTTTCGACTTTCCCTTACTATTATTGTT TTCTTTGCTTTTAGTCTTTTGATTCATTAATTTCCTTCTTTTTTTGTGCATTAAGTATGCCTTTTCATTTGATTTTCGTT CTTTTGAGTACCCACTTGTTGAGGTTTCTAACTTCAGGATTGGGGATGTGGAAACATAGAAGCTAGGATTTGAACTTTTA CTCTCTTTTTCTGTAAAATCTTAAGAATTTTTTGTTTTTGTTTTTGTTTTATTTTAAGAATTTTGTAATATTTACTGATT CTATAGTTTGATGGGTTCTGTTTCTGATTTGTTTTTGGCATGTTTTTTAATTAACATTTTCCTGTGTTGATGTTTTGTAG ACAGATACCATCCAGTATTCTGGTGCTTATGCAGCGCTAGGTGTTGACAATAGTTTGCGGTTTGATGATTTCTGTAAGAA CTTCAAGGTTGAGGTGAAACGGTTGACGGATGATGAAATGGAGTTTGATATGATTGGTATTGATCCAGCAATTGCCAATG CATTTCGACGTATCCTTATATCAGAGGTAAAATATTTATGCTTATCTCATTATTTGCAGTCATGATGTCAAACTCTTTGG TTTTGAATATTGTGTTTGCACTTTGCATTGATTAGTGCAACCATAATCTTTCATTTTTGTACTGAAAATGCTCTTCAGAG TAGACGGATTCCTTCAACTGATTTTTGTTTTGTTTGTTATTATAGGTCCCAACAATGGCTCTTGAAAGAGTTTATATTGC AAACAATACATCACTTGTACAAGATGAAGTTCTTGCTCATAGATTGGGCCTCGTTCCAATCAATGCTGATCCAAGGTTAT TTGAATATCCAGGTCTCATACGTTACACTAAAGCATACATAATTGCATTTCTCATGGCTTGTATCACTCTCTTGTGTAAT AAGTGGAAAATTGGAATTACTATACATGTTGTTTGGTTGACCCCATACAGGGCTGGGCTGAATGTTTTTTAATTGTTTCT TTCTTCCTCATGAATAGATAATGCGGGAGAGAATAATGAAAAGAATAGCATTGTCTTCAAACTACATGTTCATTGTAAAA AGGGTCAGCCTCGTATTACTGGTAAATGACTTGAAAGTCCTGCTCGATATTATTTAAGTTACTTTTAATTTCTGATTTTG TTATTTAACTTCACCCTCTATGCTGTCAGTAATCTTTCTTGTCTAATGTTATTACAATATAAATGCAGTGTTATCGGATC AGCTGAAGTGGTTACCTAATGGGAGTGAGCTTATCGCTGAAGATACCAAACCAAATACAGATTCAAAACCAAAAACATTT ACTTCTTTTACCTGCAGCCAAGACTCCCTTCCTGAATTTTCCAGCAATCCACCTGGTCCTAGATATTTGGATATTATAAT AGATAAACTTGGACCTGGTCAGGTAACCCTTGATTTCTACATTCATTCATTCTTTCTTTTTGATGTGATGCACTTACTCA TTCTTCAAAGTGAAGCGAGTAAACAAATCATAATACTGATGTGCATCATTCAAAATATATTTTAAGGGAGTGTGATTATA TAGAGAAATCAATAACTTTCTTCTTCTACTGATAGTAGGTAGTAAGCTTTTGCAGTCCATCTTCTGTGGGTGGGATTTGG AAAAGTGATGCACTTATTCTTTCTTCAAAGTAAAGGGAAAGGCTAAACATATCATAATGTCAATGTGCATTGTTCAAAAA ATCTCTGAATGGAGTTGACCACTTTTCCTTTGGGGTTATGGTTTATAGGGAGGGATCAATTACTTTCAGAGATCGTTTAC TTTTTTCTTGAGTGCTTTTCCCTCCAAGCCAACATGTTTCGTGCTAGATGGGTTATTTACCTTTAAAAAGGGAAATTGGA GCACTTATTAAAAGTTACCATTTTTTAGGTGTCGTTATGTTTTATTTCCACCCTTATTATAATTCCAGAAAACCTCTTTT GTTTCTCTGATGGGGGTCATAGGCCAGGTCAGAGAATCATAATAATGTTAGTCATGAATGGCTCTTTTGTTACTCTATAA GATTCATGTACCTCGGTTTACATTCTGCCCTTTATATTATCATCGCATACTCTGATAGGGAACTGCATGAACAGTACTCG TGAACAGTAACAGCAGTTAGGAAGTTATTATTTTATTATTATAAGTTGGGTAGTTTTATTATTATAGAAGTTAGTAACTG TTATAGTTTGAATTTAAATTAGACAGCAGCAGTTATTAGATAGCAGTAGTTATATATTAGGGGTTGGGTCTGAACTGAAG GATATTCAGAATTTGGATGGTTGTCTTAGGGAGGGACTGGACTCTCAAAATTCCAGAATCTGTAGGAGAGAACTGGCTCT CGAACACCAGTACTTCCATAATTATTCTGTAATAAATTCTGTTCTTATCATACTCTATGACCTGAGTTATTGATTTTGCA TACTTATTACTTGTCATCATAAAGAATAGTGGTAGCCCTACTTATTACTGAATACCATACTTACTAAGTACATGCTTTTG TAGGAAATCGAACTTGAAGCTCATGCAGTTAAAGGCATCGGTAAGACACACGCAAAATGGTCACCGGTTTCCACTGCTTG GTATAGGATGCTTCCAGAGGTTAGGGAATATCTTATATCTTGCCTGCTGATCACTTTCCCACTGCCACAAATTTGAAAAA ACCTGGCATCTGTTTGATTGGCTTTTCTTCTCTAGGTTGTACTCTTGGAAGATGTTCAGGATGAGTTGGCTGAAGAACTA AAAAATAAATGTCCACTTAAAGTATTTGATATTGAAGATATCGGAAAAGGTACTTCATTTTATGTTTCTATGATCCTCCT AGCATCAGATTTTTGTATCCTCTTGTGAACTACAACAGTGTGGGATTTTATGTTCAAATTGGCTTTGCATCAATGTTTGC TTTGTTTTGGACACAACATTTGTTATTGCTAAATATCAATATCATCTGTACTCTCAAGCTCCTATTTCTTTGGCGCGTTC TTAATTTGCTGCTTTGGTTGTTGAGCAAGCAGGTAAAAGAAGGGCAAAAGTAGCCAGACCACGGGACTGCACTTTGTGTA GGGAATGCATCAGAGGTGGTAAAGAATGGGAAGATCGTGTATCATTACGTCGTGTCAAAGATCATTTCATTTGTAAGTAT TATCTGAAATATAGAAATAACGAGTTCGAACTGCAAAGTTGTTTGACATACAAAAACTACAGCGTCTTTAGTATTGCATT TTCAAGGATACTCAACTTCTCTTTGTAGTTTGTAGATCAGTTGAAAAATATTAAACTTTAAGGCTGTACTGTGATCAGTT GTTTTGACAGATACATCTTAAGTGTGGCTTGTTAGTTTGACACCAAATATATTTTCGGCAGATATTAGTTTAATAGTGTG TTTCTTTATCTATTAGATTGGATGTGTATGTGCTTTTTCTCAATCCAACAATTTGAGTAATTGGAAAAATTGTCTCGGAA AGCCAAATATGTCAGTTGAATGTGCTTTCAACTGGAAACCGAACACACTCTAAGTCTTTAAGAGACGCATATGAGTATGC CACCTAGTTTAAGATTTCTATCTGGAGTTATCTGAATCTCTTTCAACTAAAACTTGTGCAAAATTGGGTTTGAATAGAGA TTTGATACTGATTGTTGTTTTATAATTCCAGGAAAATCTTAACATCTATTTCTTTTTACTTGTTTGTCTAGTCACTGTTG AATCAACTGGAGCTTTACCACCGGAGCTGCTATTTACTGAAGCTGTGAAGATTCTGGAAGATAAGTGTGAACGCGTGATT ACTGAGCTGTCTTGAGTCTTCTTGTTGCCATGTCTTAAAATGATGGAAAGAAAAAGTACAAGGACTGAAATTTATGTTAT GATATGAAAGCTCTTTTCTTACTCAGCTAAGCTGTGCATGTCTGCATGGACATGATCTGTGTTTTGCTTGTACTGTTCCA AATCTAGTTGCTTAATATAATTGATTTTATTTAAGAGGATGCTTTGAACCTTTTGCTGATCCCAGTGAGATCGGATTTTG TTGAGGAAAACCATTTGTTTTTGCTCCTAAAAGCACTTGGCAACACAACCTGTTTTCGACATAAGTTGTCCCACTTACCA AATATGCATTTGCTTCAAAGCAAGGATACACTTAAAATTAAAAAGAGAAAAAAGGTAGTGTTATAACTGTTCAGGAAAAA AT
CDS sequence (LotjaGi6g1v0141400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAGGAGTTAATGTCAGAGGGTGAAGAACAAGAACAGAGCAATGGAGGAATACTTGACTACATAATGAACTTGGA GAGCGTTCCACAGAAGCTACCTCCACACCTCGAGCTTCTCAGGACTCGCGTCCTTTGCAACGTCGATGCTCCTCAGCATA CAGATACCATCCAGTATTCTGGTGCTTATGCAGCGCTAGGTGTTGACAATAGTTTGCGGTTTGATGATTTCTGTAAGAAC TTCAAGGTTGAGGTGAAACGGTTGACGGATGATGAAATGGAGTTTGATATGATTGGTATTGATCCAGCAATTGCCAATGC ATTTCGACGTATCCTTATATCAGAGGTCCCAACAATGGCTCTTGAAAGAGTTTATATTGCAAACAATACATCACTTGTAC AAGATGAAGTTCTTGCTCATAGATTGGGCCTCGTTCCAATCAATGCTGATCCAAGGTTATTTGAATATCCAGATAATGCG GGAGAGAATAATGAAAAGAATAGCATTGTCTTCAAACTACATGTTCATTGTAAAAAGGGTCAGCCTCGTATTACTGTGTT ATCGGATCAGCTGAAGTGGTTACCTAATGGGAGTGAGCTTATCGCTGAAGATACCAAACCAAATACAGATTCAAAACCAA AAACATTTACTTCTTTTACCTGCAGCCAAGACTCCCTTCCTGAATTTTCCAGCAATCCACCTGGTCCTAGATATTTGGAT ATTATAATAGATAAACTTGGACCTGGTCAGGAAATCGAACTTGAAGCTCATGCAGTTAAAGGCATCGGTAAGACACACGC AAAATGGTCACCGGTTTCCACTGCTTGGTATAGGATGCTTCCAGAGGTTGTACTCTTGGAAGATGTTCAGGATGAGTTGG CTGAAGAACTAAAAAATAAATGTCCACTTAAAGTATTTGATATTGAAGATATCGGAAAAGGTAAAAGAAGGGCAAAAGTA GCCAGACCACGGGACTGCACTTTGTGTAGGGAATGCATCAGAGGTGGTAAAGAATGGGAAGATCGTGTATCATTACGTCG TGTCAAAGATCATTTCATTTTCACTGTTGAATCAACTGGAGCTTTACCACCGGAGCTGCTATTTACTGAAGCTGTGAAGA TTCTGGAAGATAAGTGTGAACGCGTGATTACTGAGCTGTCTTGA
Protein sequence (LotjaGi6g1v0141400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEELMSEGEEQEQSNGGILDYIMNLESVPQKLPPHLELLRTRVLCNVDAPQHTDTIQYSGAYAALGVDNSLRFDDFCKN FKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDEVLAHRLGLVPINADPRLFEYPDNA GENNEKNSIVFKLHVHCKKGQPRITVLSDQLKWLPNGSELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLD IIIDKLGPGQEIELEAHAVKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELKNKCPLKVFDIEDIGKGKRRAKV ARPRDCTLCRECIRGGKEWEDRVSLRRVKDHFIFTVESTGALPPELLFTEAVKILEDKCERVITELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 386 | 358 | 3.4E-138 | – | |
| PANTHER | 29 | 386 | 358 | 3.4E-138 | ||
| SUPERFAMILY | 79 | 386 | 308 | 1.22E-35 | ||
| Gene3D | 81 | 378 | 298 | 1.2E-105 | – | |
| CDD | 81 | 385 | 305 | 6.67863E-155 | ||
| SMART | 92 | 385 | 294 | 1.8E-110 | ||
| Pfam | 94 | 379 | 286 | 1.9E-23 | ||
| ProSitePatterns | 106 | 146 | 41 | - | ||
| SUPERFAMILY | 117 | 271 | 155 | 8.37E-32 | ||
| Gene3D | 118 | 267 | 150 | 1.2E-105 | ||
| Pfam | 124 | 270 | 147 | 4.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0141400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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