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LotjaGi6g1v0141400.2

Overview

Field Value
Gene ID LotjaGi6g1v0141400
Transcript ID LotjaGi6g1v0141400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase; TAIR: AT1G60620.1 RNA polymerase I subunit 43; Swiss-Prot: sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1; TrEMBL-Plants: tr|G7IXS2|G7IXS2_MEDTR DNA-directed RNA polymerase; Found in the gene: LotjaGi6g1v0141400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:40892857..40894156) extracted from Lotus japonicus Gifu genome v1.2.

AGCAGCCAATCGCCGACTCGAAGCACAATAGCAACTATGAAAGAGGAGTTAATGTCAGAGGGTGAAGAACAAGAACAGAG CAATGGAGGAATACTTGACTACATAATGAACTTGGAGAGCGTTCCACAGAAGCTACCTCCACACCTCGAGCTTCTCAGGA CTCGCGTCCTTTGCAACGTCGATGCTCCTCAGCATGTATCTATCTTTCGACTTTCCCTTACTATTATTGTTTTCTTTGCT TTTAGTCTTTTGATTCATTAATTTCCTTCTTTTTTTGTGCATTAAGTATGCCTTTTCATTTGATTTTCGTTCTTTTGAGT ACCCACTTGTTGAGGTTTCTAACTTCAGGATTGGGGATGTGGAAACATAGAAGCTAGGATTTGAACTTTTACTCTCTTTT TCTGTAAAATCTTAAGAATTTTTTGTTTTTGTTTTTGTTTTATTTTAAGAATTTTGTAATATTTACTGATTCTATAGTTT GATGGGTTCTGTTTCTGATTTGTTTTTGGCATGTTTTTTAATTAACATTTTCCTGTGTTGATGTTTTGTAGACAGATACC ATCCAGTATTCTGGTGCTTATGCAGCGCTAGGTGTTGACAATAGTTTGCGGTTTGATGATTTCTGTAAGAACTTCAAGGT TGAGGTGAAACGGTTGACGGATGATGAAATGGAGTTTGATATGATTGGTATTGATCCAGCAATTGCCAATGCATTTCGAC GTATCCTTATATCAGAGGTAAAATATTTATGCTTATCTCATTATTTGCAGTCATGATGTCAAACTCTTTGGTTTTGAATA TTGTGTTTGCACTTTGCATTGATTAGTGCAACCATAATCTTTCATTTTTGTACTGAAAATGCTCTTCAGAGTAGACGGAT TCCTTCAACTGATTTTTGTTTTGTTTGTTATTATAGGTCCCAACAATGGCTCTTGAAAGAGTTTATATTGCAAACAATAC ATCACTTGTACAAGATGAAGTTCTTGCTCATAGATTGGGCCTCGTTCCAATCAATGCTGATCCAAGGTTATTTGAATATC CAGGTCTCATACGTTACACTAAAGCATACATAATTGCATTTCTCATGGCTTGTATCACTCTCTTGTGTAATAAGTGGAAA ATTGGAATTACTATACATGTTGTTTGGTTGACCCCATACAGGGCTGGGCTGAATGTTTTTTAATTGTTTCTTTCTTCCTC ATGAATAGATAATGCGGGAGAGAATAATGAAAAGAATAGCATTGTCTTCAAACTACATGTTCATTGTAAAAAGGGTCAGC CTCGTATTACTGGTAAATGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0141400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGAGGAGTTAATGTCAGAGGGTGAAGAACAAGAACAGAGCAATGGAGGAATACTTGACTACATAATGAACTTGGA GAGCGTTCCACAGAAGCTACCTCCACACCTCGAGCTTCTCAGGACTCGCGTCCTTTGCAACGTCGATGCTCCTCAGCATA CAGATACCATCCAGTATTCTGGTGCTTATGCAGCGCTAGGTGTTGACAATAGTTTGCGGTTTGATGATTTCTGTAAGAAC TTCAAGGTTGAGGTGAAACGGTTGACGGATGATGAAATGGAGTTTGATATGATTGGTATTGATCCAGCAATTGCCAATGC ATTTCGACGTATCCTTATATCAGAGGTCCCAACAATGGCTCTTGAAAGAGTTTATATTGCAAACAATACATCACTTGTAC AAGATGAAGTTCTTGCTCATAGATTGGGCCTCGTTCCAATCAATGCTGATCCAAGGTTATTTGAATATCCAGATAATGCG GGAGAGAATAATGAAAAGAATAGCATTGTCTTCAAACTACATGTTCATTGTAAAAAGGGTCAGCCTCGTATTACTGGTAA ATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0141400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKEELMSEGEEQEQSNGGILDYIMNLESVPQKLPPHLELLRTRVLCNVDAPQHTDTIQYSGAYAALGVDNSLRFDDFCKN FKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDEVLAHRLGLVPINADPRLFEYPDNA GENNEKNSIVFKLHVHCKKGQPRITGK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11800
29 181 153 2.1E-62 –
PANTHER
PTHR11800:SF13
29 181 153 2.1E-62
IPR033901
SUPERFAMILY
SSF55257
79 122 44 8.63E-16
IPR036603
Gene3D
G3DSA:3.30.1360.270
81 117 37 2.2E-44 –
SMART
SM00662
92 187 96 5.6E-4
IPR011263
Pfam
PF01193
94 123 30 6.1E-10
IPR011263
ProSitePatterns
PS00446
106 146 41 -
IPR001514
SUPERFAMILY
SSF56553
117 183 67 8.63E-18
IPR036643
Gene3D
G3DSA:2.170.120.12
118 181 64 2.2E-44
IPR036643
Pfam
PF01000
124 179 56 3.5E-11
IPR011262

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0141400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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